# Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics

## Documentation for package ‘erah’ version 2.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

alignComp | Alignment of compounds
alignComp-method | Alignment of compounds
alignList | Alignment list
alignList-method | Alignment list
compInfo | Information of a Compound
computeRIerror | computeRIerror
createdt | Creating Experiment Tables
createInstrumentalTable | Create Instrumental Table
createPhenoTable | Create Phenotype Table
dataList | Data list
dataList-method | Data list
deconvolveComp | Deconvolution of compounds in samples
deconvolveComp-method | Deconvolution of compounds in samples
eRah_DB-class | Class '"eRah_DB"'
expClasses | expClasses-method
expClasses-method | expClasses-method
export2CEF | Export spectra to CEF
export2MSP | Export spectra to MSP
findComp | Find a compound
identifyComp | Identification of compounds
identifyComp-method | Identification of compounds
idList | Identification list
idList-method | Identification list
importGMD | Import MSP files from GMD to R
importMSP | Import MSP files to R
MetaboSet-class | Class '"MetaboSet"'
metaData | metaData-method
metaData-method | metaData-method
mslib | MassBank Spectral Library
newExp | New Experiment
phenoData | phenoData-method
phenoData-method | phenoData-method
plotAlign | Plotting chromatographic profile with and without alignment
plotAlign-method | Plotting chromatographic profile with and without alignment
plotChr | Plotting sample chromatogram
plotChr-method | Plotting sample chromatogram
plotProfile | Plotting chromatographic profile
plotProfile-method | Plotting chromatographic profile
plotSpectra | Plotting Spectra
plotSpectra-method | Plotting Spectra
RawDataParameters-class | Class '"RawDataParameters"'
recMissComp | Missing compound recovery
recMissComp-method | Missing compound recovery
sampleInfo | Information of the samples
sampleInfo-method | Information of the samples
setAlPar | Set Alignment Parameters
setDecPar | Set Software Parameters
show-method | Show MetaboSet object
showRTRICurve | Show RT-RI curve