aa2rbh	aa2rbh
aadir2orthofinder	aadir2orthofinder
aafile2rbh	aafile2rbh
aafile2rbhplus	aafile2rbhplus
aly	aly-data
aly-data	aly-data
ath	ath-data
ath-data	ath-data
ath_aly_crbh	ath_aly_crbh-data
ath_aly_crbh-data	ath_aly_crbh-data
ath_aly_ncbi_dagchainer	ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_dagchainer-data	ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_kaks	ath_aly_ncbi_kaks-data
ath_aly_ncbi_kaks-data	ath_aly_ncbi_kaks-data
cds2genepos	cds2genepos
cds2rbh	cds2rbh
cdsdir2orthofinder	cdsdir2orthofinder
cdsfile2aafile	cdsfile2aafile
cdsfile2rbh	cdsfile2rbh
col2transparent	col2transparent
CRBHitsColors	CRBHitsColors
filter_alnlen	filter_alnlen
filter_eval	filter_eval
filter_pident	filter_pident
filter_qcov	filter_qcov
filter_rost1999	filter_rost1999
filter_tcov	filter_tcov
gff2longest	gff2longest
gtf2longest	gtf2longest
hom_pan_ensembl_kaks	hom_pan_ensembl_kaks-data
hom_pan_ensembl_kaks-data	hom_pan_ensembl_kaks-data
isoform2longest	isoform2longest
make_dagchainer	make_dagchainer
make_last	make_last
make_vignette	make_vignette
plot_dagchainer	plot_dagchainer
plot_kaks	plot_kaks
rbh2dagchainer	rbh2dagchainer
rbh2kaks	rbh2kaks
seqid	seqid
tandemdups	tandemdups
