# Conditional reciprocal best hits (CRBHits) in R

## Documentation for package ‘CRBHits’ version 0.0.7

- DESCRIPTION file.

## Help Pages

aa2rbh | aa2rbh
aadir2orthofinder | aadir2orthofinder
aafile2rbh | aafile2rbh
aafile2rbhplus | aafile2rbhplus
aly | aly-data
aly-data | aly-data
ath | ath-data
ath-data | ath-data
ath_aly_crbh | ath_aly_crbh-data
ath_aly_crbh-data | ath_aly_crbh-data
ath_aly_ncbi_dagchainer | ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_dagchainer-data | ath_aly_ncbi_dagchainer-data
ath_aly_ncbi_kaks | ath_aly_ncbi_kaks-data
ath_aly_ncbi_kaks-data | ath_aly_ncbi_kaks-data
cds2genepos | cds2genepos
cds2rbh | cds2rbh
cdsdir2orthofinder | cdsdir2orthofinder
cdsfile2aafile | cdsfile2aafile
cdsfile2rbh | cdsfile2rbh
col2transparent | col2transparent
CRBHitsColors | CRBHitsColors
filter_alnlen | filter_alnlen
filter_eval | filter_eval
filter_pident | filter_pident
filter_qcov | filter_qcov
filter_rost1999 | filter_rost1999
filter_tcov | filter_tcov
gff2longest | gff2longest
gtf2longest | gtf2longest
hom_pan_ensembl_kaks | hom_pan_ensembl_kaks-data
hom_pan_ensembl_kaks-data | hom_pan_ensembl_kaks-data
isoform2longest | isoform2longest
make_dagchainer | make_dagchainer
make_last | make_last
make_vignette | make_vignette
plot_dagchainer | plot_dagchainer
plot_kaks | plot_kaks
rbh2dagchainer | rbh2dagchainer
rbh2kaks | rbh2kaks
seqid | seqid
tandemdups | tandemdups