# Biodb, a library for connecting to chemical and biological databases

## Documentation for package ‘biodb’ version 1.1.2

- DESCRIPTION file.

## Help Pages

Biodb | The central class of the biodb package.
Biodb-class | The central class of the biodb package.
BiodbCache | A class for handling file caching.
BiodbCache-class | A class for handling file caching.
BiodbConfig | A class for storing configuration values.
BiodbConfig-class | A class for storing configuration values.
BiodbConn | The mother abstract class of all database connectors.
BiodbConn-class | The mother abstract class of all database connectors.
BiodbDbInfo | A class for describing the characteristics of a database.
BiodbDbInfo-class | A class for describing the characteristics of a database.
BiodbDbsInfo | A class for describing the available databases.
BiodbDbsInfo-class | A class for describing the available databases.
BiodbDownloadable | An abstract class (more like an interface) to modelise a remote database that can be downloaded locally.
BiodbDownloadable-class | An abstract class (more like an interface) to modelise a remote database that can be downloaded locally.
BiodbEntry | The mother abstract class of all database entry classes.
BiodbEntry-class | The mother abstract class of all database entry classes.
BiodbEntryField | A class for describing an entry field.
BiodbEntryField-class | A class for describing an entry field.
BiodbEntryFields | A class for handling description of all entry fields.
BiodbEntryFields-class | A class for handling description of all entry fields.
BiodbFactory | A class for constructing biodb objects.
BiodbFactory-class | A class for constructing biodb objects.
BiodbLogger | A class for logging biodb messages either to standard stream or into a file.
BiodbLogger-class | A class for logging biodb messages either to standard stream or into a file.
BiodbObserver | The mother abstract class of all observer classes.
BiodbObserver-class | The mother abstract class of all observer classes.
ChemspiderConn | The connector class to ChemSpider database.
ChemspiderConn-class | The connector class to ChemSpider database.
CompounddbConn | An interface for all compound databases.
CompounddbConn-class | An interface for all compound databases.
ErrorReporter | A class for logging error messages.
ErrorReporter-class | A class for logging error messages.
ExpasyEnzymeConn | The connector class to Expasy Enzyme database.
ExpasyEnzymeConn-class | The connector class to Expasy Enzyme database.
KeggCompoundConn | The connector class to KEGG Compound database.
KeggCompoundConn-class | The connector class to KEGG Compound database.
KeggConn | The connector abstract class to KEGG databases.
KeggConn-class | The connector abstract class to KEGG databases.
MassdbConn | The mother class of all Mass spectra databases.
MassdbConn-class | The mother class of all Mass spectra databases.
RemotedbConn | The mother class of all remote database connectors.
RemotedbConn-class | The mother class of all remote database connectors.
UniprotConn | The connector class to Uniprot database.
UniprotConn-class | The connector class to Uniprot database.
UrlRequestScheduler | Class for handling URL requests.
UrlRequestScheduler-class | Class for handling URL requests.
WarningReporter | A class for logging warning messages.
WarningReporter-class | A class for logging warning messages.