# The bedr package is copyright (c) 2014 Ontario Institute for Cancer Research (OICR)
# This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL
# (either version 1, or at your option, any later version) or the Artistic License 2.0.  Refer to LICENSE for the full license text.
# OICR makes no representations whatsoever as to the SOFTWARE contained herein.  It is experimental in nature and is provided WITHOUT
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context("index2bed")

test_that("check that index to bed conversion is working", {

	regions <- get.example.regions()
	chr.dat <- c("chr1",  "chr1",  "chr1",  "chr1",  "chr2",  "chr10", "chr2",  "chr20")
	start.dat <- c(10, 101, 200, 211,  10,  50,  40,   1)
	end.dat <- c(100, 200, 210, 212,  50, 100,  60,   5)
	region.a.bed <- data.frame(chr=chr.dat,start=start.dat,end=end.dat, stringsAsFactors=F)

	expect_equal(index2bed(regions$a), region.a.bed)

	})

