# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/distiller/project/recipes/quast, last modified Fri Oct 15 13:28:02 2021
# ------------------------------------------------

package:
  name: quast
  version: 5.0.2
source:
  md5: 2b31aac010f5c04d5367f1bf718516ae
  patches:
    - genemark-issue_disable-and-exclude-from-package.patch
    - remove-explicit-dependencies-from-setup-py.patch
    - skip-glimmer-in-test.patch
  url:
    - http://downloads.sourceforge.net/project/quast/quast-5.0.2.tar.gz
    - https://github.com/ablab/quast/releases/download/quast_5.0.2/quast-5.0.2.tar.gz
build:
  number: '5'
  string: py36pl5262ha733cc0_5
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_23
    - clang 11.1.0 h694c41f_1
    - clang-11 11.1.0 default_he082bbe_1
    - clang_osx-64 11.1.0 hb91bd55_3
    - clangxx 11.1.0 default_he082bbe_1
    - clangxx_osx-64 11.1.0 h7e1b574_3
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_21
    - ldid 2.1.2 h6a69015_3
    - libclang-cpp11.1 11.1.0 default_he082bbe_1
    - libcxx 12.0.1 habf9029_0
    - libllvm11 11.1.0 hd011deb_2
    - libllvm12 12.0.1 hd011deb_2
    - libzlib 1.2.11 h9173be1_1013
    - llvm-tools 11.1.0 hd011deb_2
    - make 4.3 h22f3db7_1
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h9173be1_1013
  host:
    - blast 2.12.0 pl5262h78c34c6_0
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.17.2 h0d85af4_0
    - ca-certificates 2021.10.8 h033912b_0
    - certifi 2021.5.30 py36h79c6626_0
    - circos 0.69.8 hdfd78af_1
    - curl 7.79.1 hf45b732_1
    - cycler 0.10.0 py_2
    - entrez-direct 15.6 h193322a_1
    - expat 2.4.1 he49afe7_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 h10f422b_1005
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h4cff582_1
    - giflib 5.2.1 hbcb3906_2
    - glimmerhmm 3.0.4 pl526h0a44026_3
    - icu 68.1 h74dc148_0
    - jbig 2.1 h0d85af4_2003
    - joblib 1.1.0 pyhd8ed1ab_0
    - jpeg 9d hbcb3906_0
    - k8 0.2.5 h87af4ef_1
    - kiwisolver 1.3.1 py36hc61eee1_1
    - krb5 1.19.2 hcfbf3a7_2
    - lcms2 2.12 h577c468_0
    - lerc 3.0 he49afe7_0
    - libblas 3.9.0 12_osx64_openblas
    - libcblas 3.9.0 12_osx64_openblas
    - libcurl 7.79.1 hf45b732_1
    - libcxx 12.0.1 habf9029_0
    - libdeflate 1.8 h0d85af4_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libffi 3.4.2 he49afe7_4
    - libgd 2.3.3 h311d3fc_0
    - libgfortran 5.0.0 9_3_0_h6c81a4c_23
    - libgfortran5 9.3.0 h6c81a4c_23
    - libiconv 1.16 haf1e3a3_0
    - liblapack 3.9.0 12_osx64_openblas
    - libnghttp2 1.43.0 h6f36284_1
    - libopenblas 0.3.18 openmp_h3351f45_0
    - libpng 1.6.37 h7cec526_2
    - libssh2 1.10.0 h52ee1ee_2
    - libtiff 4.3.0 hd146c10_2
    - libwebp 1.2.1 h28dabe5_0
    - libwebp-base 1.2.1 h0d85af4_0
    - libxml2 2.9.12 h93ec3fd_0
    - libzlib 1.2.11 h9173be1_1013
    - llvm-openmp 12.0.1 hda6cdc1_1
    - lz4-c 1.9.3 he49afe7_1
    - matplotlib-base 3.3.4 py36h4ea959b_0
    - minimap2 2.22 h188c3c3_0
    - ncurses 6.2 h2e338ed_4
    - numpy 1.19.5 py36h08b5fde_2
    - olefile 0.46 pyh9f0ad1d_1
    - openjpeg 2.4.0 h6e7aa92_1
    - openssl 1.1.1l h0d85af4_0
    - pcre 8.45 he49afe7_0
    - perl 5.26.2 hbcb3906_1008
    - perl-archive-tar 2.32 pl526_0
    - perl-autoloader 5.74 pl526_2
    - perl-carp 1.38 pl526_3
    - perl-clone 0.42 pl526h01d97ff_0
    - perl-common-sense 3.74 pl526_2
    - perl-compress-raw-bzip2 2.087 pl526h6de7cb9_0
    - perl-compress-raw-zlib 2.087 pl526h770b8ee_0
    - perl-config-general 2.63 pl526_0
    - perl-digest-perl-md5 1.9 pl526_1
    - perl-dynaloader 1.25 pl526_1
    - perl-exporter 5.72 pl526_1
    - perl-exporter-tiny 1.002001 pl526_0
    - perl-extutils-makemaker 7.36 pl526_1
    - perl-font-ttf 1.06 pl526_0
    - perl-gd 2.68 pl526he941832_0
    - perl-io-compress 2.087 pl526h6de7cb9_0
    - perl-io-string 1.08 pl526_3
    - perl-io-zlib 1.10 pl526_2
    - perl-json 4.02 pl526_0
    - perl-json-xs 2.34 pl526h04f5b5a_3
    - perl-list-moreutils 0.428 pl526_1
    - perl-list-moreutils-xs 0.428 pl526_0
    - perl-math-bezier 0.01 pl526_1
    - perl-math-round 0.07 pl526_1
    - perl-math-vecstat 0.08 pl526_1
    - perl-module-implementation 0.09 pl526_2
    - perl-module-runtime 0.016 pl526_1
    - perl-number-format 1.75 pl526_3
    - perl-params-validate 1.29 pl526h1de35cc_1
    - perl-pathtools 3.75 pl526h1de35cc_1
    - perl-readonly 2.05 pl526_0
    - perl-regexp-common 2017060201 pl526_0
    - perl-scalar-list-utils 1.52 pl526h01d97ff_0
    - perl-set-intspan 1.19 pl526_1
    - perl-statistics-basic 1.6611 0
    - perl-svg 2.84 pl526_0
    - perl-text-format 0.59 pl526_2
    - perl-threaded 5.26.0 0
    - perl-time-hires 1.9760 pl526h1de35cc_1
    - perl-try-tiny 0.30 pl526_1
    - perl-types-serialiser 1.0 pl526_2
    - perl-xml-parser 2.44_01 pl5262h06ef574_1002
    - perl-xsloader 0.24 pl526_0
    - pillow 8.3.2 py36h950f3bb_0
    - pip 21.3 pyhd8ed1ab_0
    - pyparsing 2.4.7 pyh9f0ad1d_0
    - python 3.6.13 haf480d7_2_cpython
    - python-dateutil 2.8.2 pyhd8ed1ab_0
    - python_abi 3.6 2_cp36m
    - readline 8.1 h05e3726_0
    - setuptools 58.0.4 py36h79c6626_2
    - simplejson 3.17.5 py36hfa26744_0
    - six 1.16.0 pyh6c4a22f_0
    - sqlite 3.36.0 h23a322b_2
    - tk 8.6.11 h5dbffcc_1
    - tornado 6.1 py36hfa26744_1
    - wheel 0.37.0 pyhd8ed1ab_1
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h9173be1_1013
    - zstd 1.5.0 h582d3a0_0
  run:
    - blast
    - circos
    - glimmerHMM
    - joblib
    - libcxx >=11.1.0
    - libzlib >=1.2.11,<1.3.0a0
    - matplotlib-base
    - minimap2 >=2.10
    - openjdk >=8
    - perl >=5.26.2,<5.26.3.0a0
    - python >=3.6,<3.7.0a0
    - python_abi 3.6.* *_cp36m
    - simplejson
    - zlib >=1.2.11,<1.3.0a0
test:
  commands:
    - quast --version
    - metaquast --version
  source_files:
    - test_data
about:
  home: http://quast.sourceforge.net/
  license: Custom
  license_file: LICENSE.txt
  summary: Quality Assessment Tool for Genome Assemblies
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:quast
    - doi:10.1093/bioinformatics/btt086
  notes: '- GeneMark gene prediction software is disabled due to licensing issues

    '
