CHANGES.txt
Dockerfile
LICENSE.txt
MANIFEST.in
README.md
VERSION.txt
icarus.py
install.sh
install_full.sh
manual.html
metaquast.py
quast.py
setup.py
quast.egg-info/PKG-INFO
quast.egg-info/SOURCES.txt
quast.egg-info/dependency_links.txt
quast.egg-info/not-zip-safe
quast.egg-info/requires.txt
quast.egg-info/top_level.txt
quast_libs/N50.py
quast_libs/__init__.py
quast_libs/aligned_stats.py
quast_libs/basic_stats.py
quast_libs/contigs_analyzer.py
quast_libs/create_meta_summary.py
quast_libs/fastaparser.py
quast_libs/gage.py
quast_libs/genemark.py
quast_libs/genes_parser.py
quast_libs/genome_analyzer.py
quast_libs/glimmer.py
quast_libs/icarus.py
quast_libs/icarus_builder.py
quast_libs/icarus_parser.py
quast_libs/icarus_utils.py
quast_libs/log.py
quast_libs/metautils.py
quast_libs/options_parser.py
quast_libs/plotter.py
quast_libs/qconfig.py
quast_libs/qutils.py
quast_libs/ra_utils.py
quast_libs/reads_analyzer.py
quast_libs/reporting.py
quast_libs/search_references_meta.py
quast_libs/svg_alignment_plotter.py
quast_libs/version.py
quast_libs/E-MEM-linux/ACKNOWLEDGEMENTS
quast_libs/E-MEM-linux/COPYRIGHT
quast_libs/E-MEM-linux/ChangeLog
quast_libs/E-MEM-linux/INSTALL
quast_libs/E-MEM-linux/LICENSE
quast_libs/E-MEM-linux/Makefile
quast_libs/E-MEM-linux/README
quast_libs/E-MEM-linux/e-mem-linux/LICENSE
quast_libs/E-MEM-linux/e-mem-linux/Makefile
quast_libs/E-MEM-linux/e-mem-linux/README
quast_libs/E-MEM-linux/e-mem-linux/e-mem.cpp
quast_libs/E-MEM-linux/e-mem-linux/e-mem.h
quast_libs/E-MEM-linux/e-mem-linux/file.h
quast_libs/E-MEM-linux/e-mem-linux/qlist.h
quast_libs/E-MEM-linux/scripts/Foundation.pm
quast_libs/E-MEM-linux/scripts/Makefile
quast_libs/E-MEM-linux/scripts/dnadiff.pl
quast_libs/E-MEM-linux/scripts/exact-tandems.csh
quast_libs/E-MEM-linux/scripts/mapview.pl
quast_libs/E-MEM-linux/scripts/mummerplot.pl
quast_libs/E-MEM-linux/scripts/nucmer.pl
quast_libs/E-MEM-linux/scripts/nucmer2xfig.pl
quast_libs/E-MEM-linux/scripts/promer.pl
quast_libs/E-MEM-linux/scripts/run-mummer1.csh
quast_libs/E-MEM-linux/scripts/run-mummer3.csh
quast_libs/E-MEM-linux/scripts/tandem-repeat.awk
quast_libs/E-MEM-linux/src/kurtz/Makedef
quast_libs/E-MEM-linux/src/kurtz/Makefile
quast_libs/E-MEM-linux/src/kurtz/README
quast_libs/E-MEM-linux/src/kurtz/Splintoptions
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Cuthere.awk
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Dependencies.mf
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Excludemulti
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Filegoals.mf
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Filelists.mf
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Importfiles
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Makefile
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Mkprotodef.sh
quast_libs/E-MEM-linux/src/kurtz/libbasedir/Mksrc.sh
quast_libs/E-MEM-linux/src/kurtz/libbasedir/README
quast_libs/E-MEM-linux/src/kurtz/libbasedir/args.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/arraydef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/chardef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/cleanMUMcand.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/clock.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/debug.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/debugdef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/errordef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/fopen.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/intbits.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/mapfile.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/megabytes.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/minmax.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/multidef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/multiseq.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/mumcand.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/optdesc.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/procopt.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/protodef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/safescpy.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/seterror.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/space.c
quast_libs/E-MEM-linux/src/kurtz/libbasedir/spacedef.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/types.h
quast_libs/E-MEM-linux/src/kurtz/libbasedir/visible.h
quast_libs/E-MEM-linux/src/kurtz/mm3src/Dependencies.mf
quast_libs/E-MEM-linux/src/kurtz/mm3src/Filegoals.mf
quast_libs/E-MEM-linux/src/kurtz/mm3src/Makefile
quast_libs/E-MEM-linux/src/kurtz/mm3src/README
quast_libs/E-MEM-linux/src/kurtz/mm3src/findmaxmat.c
quast_libs/E-MEM-linux/src/kurtz/mm3src/findmumcand.c
quast_libs/E-MEM-linux/src/kurtz/mm3src/maxmat3.c
quast_libs/E-MEM-linux/src/kurtz/mm3src/maxmatdef.h
quast_libs/E-MEM-linux/src/kurtz/mm3src/maxmatinp.c
quast_libs/E-MEM-linux/src/kurtz/mm3src/maxmatopt.c
quast_libs/E-MEM-linux/src/kurtz/mm3src/procmaxmat.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/Dependencies.mf
quast_libs/E-MEM-linux/src/kurtz/streesrc/Filegoals.mf
quast_libs/E-MEM-linux/src/kurtz/streesrc/Macronames
quast_libs/E-MEM-linux/src/kurtz/streesrc/Makefile
quast_libs/E-MEM-linux/src/kurtz/streesrc/Mkstreeproto.sh
quast_libs/E-MEM-linux/src/kurtz/streesrc/access.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/addleafcount.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/construct.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/construct.gen
quast_libs/E-MEM-linux/src/kurtz/streesrc/depthtab.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/dfs.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/dfs.gen
quast_libs/E-MEM-linux/src/kurtz/streesrc/ex2leav.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/iterator.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/linkloc.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/loc.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/overmax.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/oversucc.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/scanpref.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/stree.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/streeacc.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streedbg.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/streedef.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streefiledoc.c
quast_libs/E-MEM-linux/src/kurtz/streesrc/streehuge.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streelarge.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streemac.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streeproto.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streesmall.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/streetyp.h
quast_libs/E-MEM-linux/src/kurtz/streesrc/symboldef.h
quast_libs/E-MEM-linux/src/tigr/Makefile
quast_libs/E-MEM-linux/src/tigr/annotate.cc
quast_libs/E-MEM-linux/src/tigr/combineMUMs.cc
quast_libs/E-MEM-linux/src/tigr/delta-filter.cc
quast_libs/E-MEM-linux/src/tigr/delta.cc
quast_libs/E-MEM-linux/src/tigr/delta.hh
quast_libs/E-MEM-linux/src/tigr/gaps.cc
quast_libs/E-MEM-linux/src/tigr/mgaps.cc
quast_libs/E-MEM-linux/src/tigr/postnuc.cc
quast_libs/E-MEM-linux/src/tigr/postpro.cc
quast_libs/E-MEM-linux/src/tigr/prenuc.cc
quast_libs/E-MEM-linux/src/tigr/prepro.cc
quast_libs/E-MEM-linux/src/tigr/repeat-match.cc
quast_libs/E-MEM-linux/src/tigr/show-aligns.cc
quast_libs/E-MEM-linux/src/tigr/show-coords.cc
quast_libs/E-MEM-linux/src/tigr/show-diff.cc
quast_libs/E-MEM-linux/src/tigr/show-snps.cc
quast_libs/E-MEM-linux/src/tigr/show-tiling.cc
quast_libs/E-MEM-linux/src/tigr/sw_align.cc
quast_libs/E-MEM-linux/src/tigr/sw_align.hh
quast_libs/E-MEM-linux/src/tigr/sw_alignscore.hh
quast_libs/E-MEM-linux/src/tigr/tigrinc.cc
quast_libs/E-MEM-linux/src/tigr/tigrinc.hh
quast_libs/E-MEM-linux/src/tigr/translate.cc
quast_libs/E-MEM-linux/src/tigr/translate.hh
quast_libs/E-MEM-osx/ACKNOWLEDGEMENTS
quast_libs/E-MEM-osx/COPYRIGHT
quast_libs/E-MEM-osx/ChangeLog
quast_libs/E-MEM-osx/INSTALL
quast_libs/E-MEM-osx/LICENSE
quast_libs/E-MEM-osx/Makefile
quast_libs/E-MEM-osx/README
quast_libs/E-MEM-osx/annotate
quast_libs/E-MEM-osx/combineMUMs
quast_libs/E-MEM-osx/delta-filter
quast_libs/E-MEM-osx/dnadiff
quast_libs/E-MEM-osx/e-mem
quast_libs/E-MEM-osx/gaps
quast_libs/E-MEM-osx/mapview
quast_libs/E-MEM-osx/mgaps
quast_libs/E-MEM-osx/mummer
quast_libs/E-MEM-osx/mummerplot
quast_libs/E-MEM-osx/nucmer
quast_libs/E-MEM-osx/nucmer2xfig
quast_libs/E-MEM-osx/promer
quast_libs/E-MEM-osx/repeat-match
quast_libs/E-MEM-osx/show-aligns
quast_libs/E-MEM-osx/show-coords
quast_libs/E-MEM-osx/show-diff
quast_libs/E-MEM-osx/show-snps
quast_libs/E-MEM-osx/show-tiling
quast_libs/E-MEM-osx/aux_bin/postnuc
quast_libs/E-MEM-osx/aux_bin/postpro
quast_libs/E-MEM-osx/aux_bin/prenuc
quast_libs/E-MEM-osx/aux_bin/prepro
quast_libs/E-MEM-osx/e-mem-linux/LICENSE
quast_libs/E-MEM-osx/e-mem-linux/Makefile
quast_libs/E-MEM-osx/e-mem-linux/README
quast_libs/E-MEM-osx/e-mem-linux/e-mem.cpp
quast_libs/E-MEM-osx/e-mem-linux/e-mem.h
quast_libs/E-MEM-osx/e-mem-linux/file.h
quast_libs/E-MEM-osx/e-mem-linux/qlist.h
quast_libs/E-MEM-osx/scripts/Foundation.pm
quast_libs/E-MEM-osx/scripts/Makefile
quast_libs/E-MEM-osx/scripts/dnadiff.pl
quast_libs/E-MEM-osx/scripts/exact-tandems.csh
quast_libs/E-MEM-osx/scripts/mapview.pl
quast_libs/E-MEM-osx/scripts/mummerplot.pl
quast_libs/E-MEM-osx/scripts/nucmer.pl
quast_libs/E-MEM-osx/scripts/nucmer2xfig.pl
quast_libs/E-MEM-osx/scripts/promer.pl
quast_libs/E-MEM-osx/scripts/run-mummer1.csh
quast_libs/E-MEM-osx/scripts/run-mummer3.csh
quast_libs/E-MEM-osx/scripts/tandem-repeat.awk
quast_libs/MUMmer3.23-docs/README
quast_libs/MUMmer3.23-docs/differences.README
quast_libs/MUMmer3.23-docs/dnadiff.README
quast_libs/MUMmer3.23-docs/mapview.README
quast_libs/MUMmer3.23-docs/nucmer.README
quast_libs/MUMmer3.23-docs/run-mummer1.README
quast_libs/MUMmer3.23-docs/run-mummer3.README
quast_libs/MUMmer3.23-linux/ACKNOWLEDGEMENTS
quast_libs/MUMmer3.23-linux/COPYRIGHT
quast_libs/MUMmer3.23-linux/ChangeLog
quast_libs/MUMmer3.23-linux/INSTALL
quast_libs/MUMmer3.23-linux/LICENSE
quast_libs/MUMmer3.23-linux/Makefile
quast_libs/MUMmer3.23-linux/README
quast_libs/MUMmer3.23-linux/scripts/Foundation.pm
quast_libs/MUMmer3.23-linux/scripts/Makefile
quast_libs/MUMmer3.23-linux/scripts/dnadiff.pl
quast_libs/MUMmer3.23-linux/scripts/exact-tandems.csh
quast_libs/MUMmer3.23-linux/scripts/mapview.pl
quast_libs/MUMmer3.23-linux/scripts/mummerplot.pl
quast_libs/MUMmer3.23-linux/scripts/nucmer.pl
quast_libs/MUMmer3.23-linux/scripts/nucmer2xfig.pl
quast_libs/MUMmer3.23-linux/scripts/promer.pl
quast_libs/MUMmer3.23-linux/scripts/run-mummer1.csh
quast_libs/MUMmer3.23-linux/scripts/run-mummer3.csh
quast_libs/MUMmer3.23-linux/scripts/tandem-repeat.awk
quast_libs/MUMmer3.23-linux/src/kurtz/Makedef
quast_libs/MUMmer3.23-linux/src/kurtz/Makefile
quast_libs/MUMmer3.23-linux/src/kurtz/README
quast_libs/MUMmer3.23-linux/src/kurtz/Splintoptions
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Cuthere.awk
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Dependencies.mf
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Excludemulti
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Filegoals.mf
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Filelists.mf
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Importfiles
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Makefile
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Mkprotodef.sh
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/Mksrc.sh
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/README
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/args.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/arraydef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/chardef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/cleanMUMcand.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/clock.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/debug.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/debugdef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/errordef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/fopen.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/intbits.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/mapfile.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/megabytes.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/minmax.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/multidef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/multiseq.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/mumcand.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/optdesc.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/procopt.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/protodef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/safescpy.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/seterror.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/space.c
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/spacedef.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/types.h
quast_libs/MUMmer3.23-linux/src/kurtz/libbasedir/visible.h
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/Dependencies.mf
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/Filegoals.mf
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/Makefile
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/README
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/findmaxmat.c
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/findmumcand.c
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/maxmat3.c
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/maxmatdef.h
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/maxmatinp.c
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/maxmatopt.c
quast_libs/MUMmer3.23-linux/src/kurtz/mm3src/procmaxmat.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/Dependencies.mf
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/Filegoals.mf
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/Macronames
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/Makefile
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/Mkstreeproto.sh
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/access.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/addleafcount.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/construct.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/construct.gen
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/depthtab.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/dfs.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/dfs.gen
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/ex2leav.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/iterator.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/linkloc.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/loc.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/overmax.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/oversucc.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/scanpref.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/stree.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streeacc.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streedbg.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streedef.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streefiledoc.c
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streehuge.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streelarge.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streemac.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streeproto.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streesmall.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/streetyp.h
quast_libs/MUMmer3.23-linux/src/kurtz/streesrc/symboldef.h
quast_libs/MUMmer3.23-linux/src/tigr/Makefile
quast_libs/MUMmer3.23-linux/src/tigr/annotate.cc
quast_libs/MUMmer3.23-linux/src/tigr/combineMUMs.cc
quast_libs/MUMmer3.23-linux/src/tigr/delta-filter.cc
quast_libs/MUMmer3.23-linux/src/tigr/delta.cc
quast_libs/MUMmer3.23-linux/src/tigr/delta.hh
quast_libs/MUMmer3.23-linux/src/tigr/gaps.cc
quast_libs/MUMmer3.23-linux/src/tigr/mgaps.cc
quast_libs/MUMmer3.23-linux/src/tigr/postnuc.cc
quast_libs/MUMmer3.23-linux/src/tigr/postpro.cc
quast_libs/MUMmer3.23-linux/src/tigr/prenuc.cc
quast_libs/MUMmer3.23-linux/src/tigr/prepro.cc
quast_libs/MUMmer3.23-linux/src/tigr/repeat-match.cc
quast_libs/MUMmer3.23-linux/src/tigr/show-aligns.cc
quast_libs/MUMmer3.23-linux/src/tigr/show-coords.cc
quast_libs/MUMmer3.23-linux/src/tigr/show-diff.cc
quast_libs/MUMmer3.23-linux/src/tigr/show-snps.cc
quast_libs/MUMmer3.23-linux/src/tigr/show-tiling.cc
quast_libs/MUMmer3.23-linux/src/tigr/sw_align.cc
quast_libs/MUMmer3.23-linux/src/tigr/sw_align.hh
quast_libs/MUMmer3.23-linux/src/tigr/sw_alignscore.hh
quast_libs/MUMmer3.23-linux/src/tigr/tigrinc.cc
quast_libs/MUMmer3.23-linux/src/tigr/tigrinc.hh
quast_libs/MUMmer3.23-linux/src/tigr/translate.cc
quast_libs/MUMmer3.23-linux/src/tigr/translate.hh
quast_libs/MUMmer3.23-osx/ACKNOWLEDGEMENTS
quast_libs/MUMmer3.23-osx/COPYRIGHT
quast_libs/MUMmer3.23-osx/ChangeLog
quast_libs/MUMmer3.23-osx/INSTALL
quast_libs/MUMmer3.23-osx/LICENSE
quast_libs/MUMmer3.23-osx/Makefile
quast_libs/MUMmer3.23-osx/README
quast_libs/MUMmer3.23-osx/scripts/Foundation.pm
quast_libs/MUMmer3.23-osx/scripts/Makefile
quast_libs/MUMmer3.23-osx/scripts/dnadiff.pl
quast_libs/MUMmer3.23-osx/scripts/exact-tandems.csh
quast_libs/MUMmer3.23-osx/scripts/mapview.pl
quast_libs/MUMmer3.23-osx/scripts/mummerplot.pl
quast_libs/MUMmer3.23-osx/scripts/nucmer.pl
quast_libs/MUMmer3.23-osx/scripts/nucmer2xfig.pl
quast_libs/MUMmer3.23-osx/scripts/promer.pl
quast_libs/MUMmer3.23-osx/scripts/run-mummer1.csh
quast_libs/MUMmer3.23-osx/scripts/run-mummer3.csh
quast_libs/MUMmer3.23-osx/scripts/tandem-repeat.awk
quast_libs/MUMmer3.23-osx/src/kurtz/Makedef
quast_libs/MUMmer3.23-osx/src/kurtz/Makefile
quast_libs/MUMmer3.23-osx/src/kurtz/README
quast_libs/MUMmer3.23-osx/src/kurtz/Splintoptions
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Cuthere.awk
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Dependencies.mf
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Excludemulti
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Filegoals.mf
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Filelists.mf
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Importfiles
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Makefile
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Mkprotodef.sh
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/Mksrc.sh
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/README
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/args.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/arraydef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/chardef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/cleanMUMcand.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/clock.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/debug.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/debugdef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/errordef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/fopen.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/intbits.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/mapfile.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/megabytes.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/minmax.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/multidef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/multiseq.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/mumcand.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/optdesc.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/procopt.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/protodef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/safescpy.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/seterror.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/space.c
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/spacedef.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/types.h
quast_libs/MUMmer3.23-osx/src/kurtz/libbasedir/visible.h
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/Dependencies.mf
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/Filegoals.mf
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/Makefile
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/README
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/findmaxmat.c
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/findmumcand.c
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/maxmat3.c
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/maxmatdef.h
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/maxmatinp.c
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/maxmatopt.c
quast_libs/MUMmer3.23-osx/src/kurtz/mm3src/procmaxmat.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/Dependencies.mf
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/Filegoals.mf
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/Macronames
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/Makefile
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/Mkstreeproto.sh
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/access.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/addleafcount.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/construct.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/construct.gen
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/depthtab.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/dfs.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/dfs.gen
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/ex2leav.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/iterator.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/linkloc.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/loc.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/overmax.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/oversucc.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/scanpref.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/stree.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streeacc.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streedbg.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streedef.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streefiledoc.c
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streehuge.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streelarge.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streemac.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streeproto.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streesmall.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/streetyp.h
quast_libs/MUMmer3.23-osx/src/kurtz/streesrc/symboldef.h
quast_libs/MUMmer3.23-osx/src/tigr/Makefile
quast_libs/MUMmer3.23-osx/src/tigr/annotate.cc
quast_libs/MUMmer3.23-osx/src/tigr/combineMUMs.cc
quast_libs/MUMmer3.23-osx/src/tigr/delta-filter.cc
quast_libs/MUMmer3.23-osx/src/tigr/delta.cc
quast_libs/MUMmer3.23-osx/src/tigr/delta.hh
quast_libs/MUMmer3.23-osx/src/tigr/gaps.cc
quast_libs/MUMmer3.23-osx/src/tigr/mgaps.cc
quast_libs/MUMmer3.23-osx/src/tigr/postnuc.cc
quast_libs/MUMmer3.23-osx/src/tigr/postpro.cc
quast_libs/MUMmer3.23-osx/src/tigr/prenuc.cc
quast_libs/MUMmer3.23-osx/src/tigr/prepro.cc
quast_libs/MUMmer3.23-osx/src/tigr/repeat-match.cc
quast_libs/MUMmer3.23-osx/src/tigr/show-aligns.cc
quast_libs/MUMmer3.23-osx/src/tigr/show-coords.cc
quast_libs/MUMmer3.23-osx/src/tigr/show-diff.cc
quast_libs/MUMmer3.23-osx/src/tigr/show-snps.cc
quast_libs/MUMmer3.23-osx/src/tigr/show-tiling.cc
quast_libs/MUMmer3.23-osx/src/tigr/sw_align.cc
quast_libs/MUMmer3.23-osx/src/tigr/sw_align.hh
quast_libs/MUMmer3.23-osx/src/tigr/sw_alignscore.hh
quast_libs/MUMmer3.23-osx/src/tigr/tigrinc.cc
quast_libs/MUMmer3.23-osx/src/tigr/tigrinc.hh
quast_libs/MUMmer3.23-osx/src/tigr/translate.cc
quast_libs/MUMmer3.23-osx/src/tigr/translate.hh
quast_libs/bedtools/.gitignore
quast_libs/bedtools/.travis.yml
quast_libs/bedtools/LICENSE
quast_libs/bedtools/Makefile
quast_libs/bedtools/README.md
quast_libs/bedtools/RELEASE_HISTORY
quast_libs/bedtools/scripts/makeBashScripts.py
quast_libs/bedtools/scripts/vcfsort.sh
quast_libs/bedtools/src/bedtools.cpp
quast_libs/bedtools/src/annotateBed/Makefile
quast_libs/bedtools/src/annotateBed/annotateBed.cpp
quast_libs/bedtools/src/annotateBed/annotateBed.h
quast_libs/bedtools/src/annotateBed/annotateMain.cpp
quast_libs/bedtools/src/bamToBed/Makefile
quast_libs/bedtools/src/bamToBed/bamToBed.cpp
quast_libs/bedtools/src/bamToFastq/Makefile
quast_libs/bedtools/src/bamToFastq/bamToFastq.cpp
quast_libs/bedtools/src/bamToFastq/bamToFastq.h
quast_libs/bedtools/src/bamToFastq/bamToFastqMain.cpp
quast_libs/bedtools/src/bed12ToBed6/Makefile
quast_libs/bedtools/src/bed12ToBed6/bed12ToBed6.cpp
quast_libs/bedtools/src/bedToBam/Makefile
quast_libs/bedtools/src/bedToBam/bedToBam.cpp
quast_libs/bedtools/src/bedToIgv/Makefile
quast_libs/bedtools/src/bedToIgv/bedToIgv.cpp
quast_libs/bedtools/src/bedpeToBam/Makefile
quast_libs/bedtools/src/bedpeToBam/bedpeToBam.cpp
quast_libs/bedtools/src/bedpeToBam/notes.txt
quast_libs/bedtools/src/closestFile/Makefile
quast_libs/bedtools/src/closestFile/closestFile.cpp
quast_libs/bedtools/src/closestFile/closestFile.h
quast_libs/bedtools/src/closestFile/closestHelp.cpp
quast_libs/bedtools/src/clusterBed/Makefile
quast_libs/bedtools/src/clusterBed/clusterBed.cpp
quast_libs/bedtools/src/clusterBed/clusterBed.h
quast_libs/bedtools/src/clusterBed/clusterMain.cpp
quast_libs/bedtools/src/complementFile/Makefile
quast_libs/bedtools/src/complementFile/complementFile.cpp
quast_libs/bedtools/src/complementFile/complementFile.h
quast_libs/bedtools/src/complementFile/complementHelp.cpp
quast_libs/bedtools/src/coverageFile/Makefile
quast_libs/bedtools/src/coverageFile/coverageFile.cpp
quast_libs/bedtools/src/coverageFile/coverageFile.h
quast_libs/bedtools/src/coverageFile/coverageHelp.cpp
quast_libs/bedtools/src/expand/Makefile
quast_libs/bedtools/src/expand/expand.cpp
quast_libs/bedtools/src/fastaFromBed/Makefile
quast_libs/bedtools/src/fastaFromBed/fastaFromBed.cpp
quast_libs/bedtools/src/fastaFromBed/fastaFromBed.h
quast_libs/bedtools/src/fastaFromBed/fastaFromBedMain.cpp
quast_libs/bedtools/src/fisher/Makefile
quast_libs/bedtools/src/fisher/fisher.cpp
quast_libs/bedtools/src/fisher/fisher.h
quast_libs/bedtools/src/fisher/fisherHelp.cpp
quast_libs/bedtools/src/fisher/kfunc.cpp
quast_libs/bedtools/src/fisher/kfunc.h
quast_libs/bedtools/src/flankBed/Makefile
quast_libs/bedtools/src/flankBed/flankBed.cpp
quast_libs/bedtools/src/flankBed/flankBed.h
quast_libs/bedtools/src/flankBed/flankBedMain.cpp
quast_libs/bedtools/src/genomeCoverageBed/Makefile
quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageBed.cpp
quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageBed.h
quast_libs/bedtools/src/genomeCoverageBed/genomeCoverageMain.cpp
quast_libs/bedtools/src/getOverlap/Makefile
quast_libs/bedtools/src/getOverlap/getOverlap.cpp
quast_libs/bedtools/src/groupBy/Makefile
quast_libs/bedtools/src/groupBy/groupBy.cpp
quast_libs/bedtools/src/groupBy/groupBy.h
quast_libs/bedtools/src/groupBy/groupByHelp.cpp
quast_libs/bedtools/src/intersectFile/Makefile
quast_libs/bedtools/src/intersectFile/intersectFile.cpp
quast_libs/bedtools/src/intersectFile/intersectFile.h
quast_libs/bedtools/src/intersectFile/intersectHelp.cpp
quast_libs/bedtools/src/jaccard/Makefile
quast_libs/bedtools/src/jaccard/jaccard.cpp
quast_libs/bedtools/src/jaccard/jaccard.h
quast_libs/bedtools/src/jaccard/jaccardHelp.cpp
quast_libs/bedtools/src/linksBed/Makefile
quast_libs/bedtools/src/linksBed/linksBed.cpp
quast_libs/bedtools/src/linksBed/linksBed.h
quast_libs/bedtools/src/linksBed/linksMain.cpp
quast_libs/bedtools/src/mapFile/Makefile
quast_libs/bedtools/src/mapFile/mapFile.cpp
quast_libs/bedtools/src/mapFile/mapFile.h
quast_libs/bedtools/src/mapFile/mapHelp.cpp
quast_libs/bedtools/src/maskFastaFromBed/Makefile
quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBed.cpp
quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBed.h
quast_libs/bedtools/src/maskFastaFromBed/maskFastaFromBedMain.cpp
quast_libs/bedtools/src/mergeFile/Makefile
quast_libs/bedtools/src/mergeFile/mergeFile.cpp
quast_libs/bedtools/src/mergeFile/mergeFile.h
quast_libs/bedtools/src/mergeFile/mergeHelp.cpp
quast_libs/bedtools/src/multiBamCov/Makefile
quast_libs/bedtools/src/multiBamCov/multiBamCov.cpp
quast_libs/bedtools/src/multiBamCov/multiBamCov.h
quast_libs/bedtools/src/multiBamCov/multiBamCovMain.cpp
quast_libs/bedtools/src/multiIntersectBed/Makefile
quast_libs/bedtools/src/multiIntersectBed/multiIntersectBed.cpp
quast_libs/bedtools/src/multiIntersectBed/multiIntersectBed.h
quast_libs/bedtools/src/multiIntersectBed/multiIntersectBedMain.cpp
quast_libs/bedtools/src/nekSandbox1/FormatGuess.h
quast_libs/bedtools/src/nekSandbox1/Makefile
quast_libs/bedtools/src/nekSandbox1/nekSandboxMain.cpp
quast_libs/bedtools/src/nucBed/LargeFileSupport.h
quast_libs/bedtools/src/nucBed/Makefile
quast_libs/bedtools/src/nucBed/nucBed.cpp
quast_libs/bedtools/src/nucBed/nucBed.h
quast_libs/bedtools/src/nucBed/nucBedMain.cpp
quast_libs/bedtools/src/pairToBed/Makefile
quast_libs/bedtools/src/pairToBed/pairToBed.cpp
quast_libs/bedtools/src/pairToBed/pairToBed.h
quast_libs/bedtools/src/pairToBed/pairToBedMain.cpp
quast_libs/bedtools/src/pairToPair/Makefile
quast_libs/bedtools/src/pairToPair/pairToPair.cpp
quast_libs/bedtools/src/pairToPair/pairToPair.h
quast_libs/bedtools/src/pairToPair/pairToPairMain.cpp
quast_libs/bedtools/src/randomBed/Makefile
quast_libs/bedtools/src/randomBed/randomBed.cpp
quast_libs/bedtools/src/randomBed/randomBed.h
quast_libs/bedtools/src/randomBed/randomBedMain.cpp
quast_libs/bedtools/src/regressTest/Makefile
quast_libs/bedtools/src/regressTest/RegressTest.cpp
quast_libs/bedtools/src/regressTest/RegressTest.h
quast_libs/bedtools/src/regressTest/regressTestMain.cpp
quast_libs/bedtools/src/reldist/Makefile
quast_libs/bedtools/src/reldist/reldist.cpp
quast_libs/bedtools/src/reldist/reldist.h
quast_libs/bedtools/src/reldist/reldistMain.cpp
quast_libs/bedtools/src/sampleFile/Makefile
quast_libs/bedtools/src/sampleFile/sampleFile.cpp
quast_libs/bedtools/src/sampleFile/sampleFile.h
quast_libs/bedtools/src/sampleFile/sampleHelp.cpp
quast_libs/bedtools/src/shuffleBed/Makefile
quast_libs/bedtools/src/shuffleBed/shuffleBed.cpp
quast_libs/bedtools/src/shuffleBed/shuffleBed.h
quast_libs/bedtools/src/shuffleBed/shuffleBedMain.cpp
quast_libs/bedtools/src/slopBed/Makefile
quast_libs/bedtools/src/slopBed/slopBed.cpp
quast_libs/bedtools/src/slopBed/slopBed.h
quast_libs/bedtools/src/slopBed/slopBedMain.cpp
quast_libs/bedtools/src/sortBed/Makefile
quast_libs/bedtools/src/sortBed/sortBed.cpp
quast_libs/bedtools/src/sortBed/sortBed.h
quast_libs/bedtools/src/sortBed/sortMain.cpp
quast_libs/bedtools/src/spacingFile/Makefile
quast_libs/bedtools/src/spacingFile/spacingFile.cpp
quast_libs/bedtools/src/spacingFile/spacingFile.h
quast_libs/bedtools/src/spacingFile/spacingHelp.cpp
quast_libs/bedtools/src/split/Makefile
quast_libs/bedtools/src/split/splitBed.cpp
quast_libs/bedtools/src/split/splitBed.h
quast_libs/bedtools/src/split/splitBedMain.cpp
quast_libs/bedtools/src/subtractFile/Makefile
quast_libs/bedtools/src/subtractFile/subtractFile.cpp
quast_libs/bedtools/src/subtractFile/subtractFile.h
quast_libs/bedtools/src/subtractFile/subtractHelp.cpp
quast_libs/bedtools/src/tagBam/Makefile
quast_libs/bedtools/src/tagBam/tagBam.cpp
quast_libs/bedtools/src/tagBam/tagBam.h
quast_libs/bedtools/src/tagBam/tagBamMain.cpp
quast_libs/bedtools/src/unionBedGraphs/Makefile
quast_libs/bedtools/src/unionBedGraphs/unionBedGraphs.cpp
quast_libs/bedtools/src/unionBedGraphs/unionBedGraphs.h
quast_libs/bedtools/src/unionBedGraphs/unionBedGraphsMain.cpp
quast_libs/bedtools/src/utils/BamTools/.gitignore
quast_libs/bedtools/src/utils/BamTools/LICENSE
quast_libs/bedtools/src/utils/BamTools/Makefile
quast_libs/bedtools/src/utils/BamTools-Ancillary/BamAncillary.cpp
quast_libs/bedtools/src/utils/BamTools-Ancillary/BamAncillary.h
quast_libs/bedtools/src/utils/BamTools-Ancillary/Makefile
quast_libs/bedtools/src/utils/BamTools/src/api/BamAlgorithms.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamAlignment.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/BamAlignment.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamAux.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamConstants.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamIndex.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamMultiReader.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/BamMultiReader.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamReader.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/BamReader.h
quast_libs/bedtools/src/utils/BamTools/src/api/BamWriter.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/BamWriter.h
quast_libs/bedtools/src/utils/BamTools/src/api/IBamIODevice.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamConstants.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamHeader.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamHeader.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamProgram.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamProgram.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamProgramChain.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamProgramChain.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroup.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroup.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroupDictionary.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamReadGroupDictionary.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamSequence.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamSequence.h
quast_libs/bedtools/src/utils/BamTools/src/api/SamSequenceDictionary.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/SamSequenceDictionary.h
quast_libs/bedtools/src/utils/BamTools/src/api/api_global.h
quast_libs/bedtools/src/utils/BamTools/src/api/algorithms/Sort.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamHeader_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamHeader_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiMerger_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiReader_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamMultiReader_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamRandomAccessController_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamRandomAccessController_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamReader_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamReader_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamWriter_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/bam/BamWriter_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamIndexFactory_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamIndexFactory_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamStandardIndex_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamStandardIndex_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamToolsIndex_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/index/BamToolsIndex_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamDeviceFactory_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamDeviceFactory_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFile_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFile_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFtp_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamFtp_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamHttp_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamHttp_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamPipe_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BamPipe_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BgzfStream_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/BgzfStream_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ByteArray_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ByteArray_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostAddress_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostAddress_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostInfo_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HostInfo_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HttpHeader_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/HttpHeader_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ILocalIODevice_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/ILocalIODevice_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/NetUnix_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/NetWin_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/RollingBuffer_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/RollingBuffer_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/StdStreamDevice_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_unix_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocketEngine_win_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocket_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/io/TcpSocket_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatParser_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatParser_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatPrinter_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamFormatPrinter_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderValidator_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderValidator_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/sam/SamHeaderVersion_p.h
quast_libs/bedtools/src/utils/BamTools/src/api/internal/utils/BamException_p.cpp
quast_libs/bedtools/src/utils/BamTools/src/api/internal/utils/BamException_p.h
quast_libs/bedtools/src/utils/BamTools/src/shared/bamtools_global.h
quast_libs/bedtools/src/utils/BinTree/BinTree.cpp
quast_libs/bedtools/src/utils/BinTree/BinTree.h
quast_libs/bedtools/src/utils/BinTree/Makefile
quast_libs/bedtools/src/utils/BlockedIntervals/BlockedIntervals.cpp
quast_libs/bedtools/src/utils/BlockedIntervals/BlockedIntervals.h
quast_libs/bedtools/src/utils/BlockedIntervals/Makefile
quast_libs/bedtools/src/utils/Contexts/ContextBase.cpp
quast_libs/bedtools/src/utils/Contexts/ContextBase.h
quast_libs/bedtools/src/utils/Contexts/ContextClosest.cpp
quast_libs/bedtools/src/utils/Contexts/ContextClosest.h
quast_libs/bedtools/src/utils/Contexts/ContextComplement.cpp
quast_libs/bedtools/src/utils/Contexts/ContextComplement.h
quast_libs/bedtools/src/utils/Contexts/ContextCoverage.cpp
quast_libs/bedtools/src/utils/Contexts/ContextCoverage.h
quast_libs/bedtools/src/utils/Contexts/ContextFisher.cpp
quast_libs/bedtools/src/utils/Contexts/ContextFisher.h
quast_libs/bedtools/src/utils/Contexts/ContextGroupBy.cpp
quast_libs/bedtools/src/utils/Contexts/ContextGroupBy.h
quast_libs/bedtools/src/utils/Contexts/ContextIntersect.cpp
quast_libs/bedtools/src/utils/Contexts/ContextIntersect.h
quast_libs/bedtools/src/utils/Contexts/ContextJaccard.cpp
quast_libs/bedtools/src/utils/Contexts/ContextJaccard.h
quast_libs/bedtools/src/utils/Contexts/ContextMap.cpp
quast_libs/bedtools/src/utils/Contexts/ContextMap.h
quast_libs/bedtools/src/utils/Contexts/ContextMerge.cpp
quast_libs/bedtools/src/utils/Contexts/ContextMerge.h
quast_libs/bedtools/src/utils/Contexts/ContextSample.cpp
quast_libs/bedtools/src/utils/Contexts/ContextSample.h
quast_libs/bedtools/src/utils/Contexts/ContextSpacing.cpp
quast_libs/bedtools/src/utils/Contexts/ContextSpacing.h
quast_libs/bedtools/src/utils/Contexts/ContextSubtract.cpp
quast_libs/bedtools/src/utils/Contexts/ContextSubtract.h
quast_libs/bedtools/src/utils/Contexts/Makefile
quast_libs/bedtools/src/utils/Fasta/Fasta.cpp
quast_libs/bedtools/src/utils/Fasta/Fasta.h
quast_libs/bedtools/src/utils/Fasta/LargeFileSupport.h
quast_libs/bedtools/src/utils/Fasta/Makefile
quast_libs/bedtools/src/utils/Fasta/split.cpp
quast_libs/bedtools/src/utils/Fasta/split.h
quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMergeMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMergeMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileRecordMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/Makefile
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BamFileReader.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BamFileReader.h
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/FileReader.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/FileReader.h
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/InputStreamMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/InputStreamMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/Makefile
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTransferBuffer.cpp
quast_libs/bedtools/src/utils/FileRecordTools/FileReaders/SingleLineDelimTransferBuffer.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/BamRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/BamRecord.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed12Interval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed12Interval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed3Interval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed3Interval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed4Interval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed4Interval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed5Interval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed5Interval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed6Interval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Bed6Interval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/BedGraphInterval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/BedGraphInterval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/BedPlusInterval.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/BedPlusInterval.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/BlockMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/BlockMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/EmptyRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/EmptyRecord.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/GffPlusRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/GffPlusRecord.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/GffRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/GffRecord.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Makefile
quast_libs/bedtools/src/utils/FileRecordTools/Records/NoPosPlusRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/NoPosPlusRecord.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/PlusFields.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/PlusFields.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/Record.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/Record.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyList.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyList.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyVector.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordKeyVector.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordList.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordList.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordMgr.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/RecordMgr.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/StrandQueue.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/StrandQueue.h
quast_libs/bedtools/src/utils/FileRecordTools/Records/VcfRecord.cpp
quast_libs/bedtools/src/utils/FileRecordTools/Records/VcfRecord.h
quast_libs/bedtools/src/utils/GenomeFile/GenomeFile.cpp
quast_libs/bedtools/src/utils/GenomeFile/GenomeFile.h
quast_libs/bedtools/src/utils/GenomeFile/Makefile
quast_libs/bedtools/src/utils/GenomeFile/NewGenomeFile.cpp
quast_libs/bedtools/src/utils/GenomeFile/NewGenomeFile.h
quast_libs/bedtools/src/utils/KeyListOps/KeyListOps.cpp
quast_libs/bedtools/src/utils/KeyListOps/KeyListOps.h
quast_libs/bedtools/src/utils/KeyListOps/KeyListOpsMethods.cpp
quast_libs/bedtools/src/utils/KeyListOps/KeyListOpsMethods.h
quast_libs/bedtools/src/utils/KeyListOps/Makefile
quast_libs/bedtools/src/utils/NewChromsweep/CloseSweep.cpp
quast_libs/bedtools/src/utils/NewChromsweep/CloseSweep.h
quast_libs/bedtools/src/utils/NewChromsweep/Makefile
quast_libs/bedtools/src/utils/NewChromsweep/NewChromsweep.cpp
quast_libs/bedtools/src/utils/NewChromsweep/NewChromsweep.h
quast_libs/bedtools/src/utils/Point/Point.h
quast_libs/bedtools/src/utils/RecordOutputMgr/Makefile
quast_libs/bedtools/src/utils/RecordOutputMgr/RecordOutputMgr.cpp
quast_libs/bedtools/src/utils/RecordOutputMgr/RecordOutputMgr.h
quast_libs/bedtools/src/utils/ToolBase/Makefile
quast_libs/bedtools/src/utils/ToolBase/ToolBase.cpp
quast_libs/bedtools/src/utils/ToolBase/ToolBase.h
quast_libs/bedtools/src/utils/VectorOps/Makefile
quast_libs/bedtools/src/utils/VectorOps/VectorOps.cpp
quast_libs/bedtools/src/utils/VectorOps/VectorOps.h
quast_libs/bedtools/src/utils/bedFile/Makefile
quast_libs/bedtools/src/utils/bedFile/bedFile.cpp
quast_libs/bedtools/src/utils/bedFile/bedFile.h
quast_libs/bedtools/src/utils/bedFilePE/Makefile
quast_libs/bedtools/src/utils/bedFilePE/bedFilePE.cpp
quast_libs/bedtools/src/utils/bedFilePE/bedFilePE.h
quast_libs/bedtools/src/utils/bedGraphFile/Makefile
quast_libs/bedtools/src/utils/bedGraphFile/bedGraphFile.cpp
quast_libs/bedtools/src/utils/bedGraphFile/bedGraphFile.h
quast_libs/bedtools/src/utils/chromsweep/Makefile
quast_libs/bedtools/src/utils/chromsweep/chromsweep.cpp
quast_libs/bedtools/src/utils/chromsweep/chromsweep.h
quast_libs/bedtools/src/utils/driver/BedtoolsDriver.cpp
quast_libs/bedtools/src/utils/driver/BedtoolsDriver.h
quast_libs/bedtools/src/utils/driver/Makefile
quast_libs/bedtools/src/utils/fileType/FileRecordTypeChecker.cpp
quast_libs/bedtools/src/utils/fileType/FileRecordTypeChecker.h
quast_libs/bedtools/src/utils/fileType/Makefile
quast_libs/bedtools/src/utils/fileType/fileType.cpp
quast_libs/bedtools/src/utils/fileType/fileType.h
quast_libs/bedtools/src/utils/general/BTlist.h
quast_libs/bedtools/src/utils/general/BedtoolsTypes.h
quast_libs/bedtools/src/utils/general/CommonHelp.cpp
quast_libs/bedtools/src/utils/general/CommonHelp.h
quast_libs/bedtools/src/utils/general/CompressionTools.cpp
quast_libs/bedtools/src/utils/general/CompressionTools.h
quast_libs/bedtools/src/utils/general/ErrorMsg.cpp
quast_libs/bedtools/src/utils/general/ErrorMsg.h
quast_libs/bedtools/src/utils/general/FreeList.h
quast_libs/bedtools/src/utils/general/InflateStreamBuf.h
quast_libs/bedtools/src/utils/general/Makefile
quast_libs/bedtools/src/utils/general/ParseTools.cpp
quast_libs/bedtools/src/utils/general/ParseTools.h
quast_libs/bedtools/src/utils/general/PushBackStreamBuf.cpp
quast_libs/bedtools/src/utils/general/PushBackStreamBuf.h
quast_libs/bedtools/src/utils/general/QuickString.cpp
quast_libs/bedtools/src/utils/general/QuickString.h
quast_libs/bedtools/src/utils/general/Tokenizer.cpp
quast_libs/bedtools/src/utils/general/Tokenizer.h
quast_libs/bedtools/src/utils/gzstream/COPYING.LIB
quast_libs/bedtools/src/utils/gzstream/Makefile
quast_libs/bedtools/src/utils/gzstream/README
quast_libs/bedtools/src/utils/gzstream/gzstream.C
quast_libs/bedtools/src/utils/gzstream/gzstream.h
quast_libs/bedtools/src/utils/gzstream/version
quast_libs/bedtools/src/utils/lineFileUtilities/lineFileUtilities.h
quast_libs/bedtools/src/utils/sequenceUtilities/Makefile
quast_libs/bedtools/src/utils/sequenceUtilities/sequenceUtils.cpp
quast_libs/bedtools/src/utils/sequenceUtilities/sequenceUtils.h
quast_libs/bedtools/src/utils/stringUtilities/stringUtilities.h
quast_libs/bedtools/src/utils/tabFile/Makefile
quast_libs/bedtools/src/utils/tabFile/tabFile.cpp
quast_libs/bedtools/src/utils/tabFile/tabFile.h
quast_libs/bedtools/src/utils/version/Makefile
quast_libs/bedtools/src/utils/version/version.cpp
quast_libs/bedtools/src/utils/version/version.h
quast_libs/bedtools/src/utils/version/version_release.txt
quast_libs/bedtools/src/windowBed/Makefile
quast_libs/bedtools/src/windowBed/windowBed.cpp
quast_libs/bedtools/src/windowBed/windowBed.h
quast_libs/bedtools/src/windowBed/windowMain.cpp
quast_libs/bedtools/src/windowMaker/Makefile
quast_libs/bedtools/src/windowMaker/windowMaker.cpp
quast_libs/bedtools/src/windowMaker/windowMaker.h
quast_libs/bedtools/src/windowMaker/windowMakerMain.cpp
quast_libs/bwa/.gitignore
quast_libs/bwa/.travis.yml
quast_libs/bwa/COPYING
quast_libs/bwa/ChangeLog
quast_libs/bwa/Makefile
quast_libs/bwa/NEWS.md
quast_libs/bwa/QSufSort.c
quast_libs/bwa/QSufSort.h
quast_libs/bwa/README-alt.md
quast_libs/bwa/README.md
quast_libs/bwa/bamlite.c
quast_libs/bwa/bamlite.h
quast_libs/bwa/bntseq.c
quast_libs/bwa/bntseq.h
quast_libs/bwa/bwa.1
quast_libs/bwa/bwa.c
quast_libs/bwa/bwa.h
quast_libs/bwa/bwamem.c
quast_libs/bwa/bwamem.h
quast_libs/bwa/bwamem_extra.c
quast_libs/bwa/bwamem_pair.c
quast_libs/bwa/bwape.c
quast_libs/bwa/bwase.c
quast_libs/bwa/bwase.h
quast_libs/bwa/bwaseqio.c
quast_libs/bwa/bwashm.c
quast_libs/bwa/bwt.c
quast_libs/bwa/bwt.h
quast_libs/bwa/bwt_gen.c
quast_libs/bwa/bwt_lite.c
quast_libs/bwa/bwt_lite.h
quast_libs/bwa/bwtaln.c
quast_libs/bwa/bwtaln.h
quast_libs/bwa/bwtgap.c
quast_libs/bwa/bwtgap.h
quast_libs/bwa/bwtindex.c
quast_libs/bwa/bwtsw2.h
quast_libs/bwa/bwtsw2_aux.c
quast_libs/bwa/bwtsw2_chain.c
quast_libs/bwa/bwtsw2_core.c
quast_libs/bwa/bwtsw2_main.c
quast_libs/bwa/bwtsw2_pair.c
quast_libs/bwa/example.c
quast_libs/bwa/fastmap.c
quast_libs/bwa/is.c
quast_libs/bwa/kbtree.h
quast_libs/bwa/khash.h
quast_libs/bwa/kopen.c
quast_libs/bwa/kseq.h
quast_libs/bwa/ksort.h
quast_libs/bwa/kstring.c
quast_libs/bwa/kstring.h
quast_libs/bwa/ksw.c
quast_libs/bwa/ksw.h
quast_libs/bwa/kthread.c
quast_libs/bwa/kvec.h
quast_libs/bwa/main.c
quast_libs/bwa/malloc_wrap.c
quast_libs/bwa/malloc_wrap.h
quast_libs/bwa/maxk.c
quast_libs/bwa/pemerge.c
quast_libs/bwa/qualfa2fq.pl
quast_libs/bwa/rle.c
quast_libs/bwa/rle.h
quast_libs/bwa/rope.c
quast_libs/bwa/rope.h
quast_libs/bwa/utils.c
quast_libs/bwa/utils.h
quast_libs/bwa/xa2multi.pl
quast_libs/bwa/bwakit/README.md
quast_libs/bwa/bwakit/bwa-postalt.js
quast_libs/bwa/bwakit/run-HLA
quast_libs/bwa/bwakit/run-bwamem
quast_libs/bwa/bwakit/run-gen-ref
quast_libs/bwa/bwakit/typeHLA-selctg.js
quast_libs/bwa/bwakit/typeHLA.js
quast_libs/bwa/bwakit/typeHLA.sh
quast_libs/ca_utils/__init__.py
quast_libs/ca_utils/align_contigs.py
quast_libs/ca_utils/analyze_contigs.py
quast_libs/ca_utils/analyze_coverage.py
quast_libs/ca_utils/analyze_misassemblies.py
quast_libs/ca_utils/best_set_selection.py
quast_libs/ca_utils/misc.py
quast_libs/ca_utils/save_results.py
quast_libs/gage/GetFastaStats.java
quast_libs/gage/SizeFasta.java
quast_libs/gage/Utils.java
quast_libs/gage/colsum.pl
quast_libs/gage/getCorrectnessStats.sh
quast_libs/gage/getMummerStats.sh
quast_libs/genemark/MetaGeneMark_v1.mod
quast_libs/genemark-es/lib/LineFit.pm
quast_libs/genemark-es/lib/ReadBackwards.pm
quast_libs/genemark-es/lib/YAML.pm
quast_libs/genemark-es/lib/Class/Data/Inheritable.pm
quast_libs/genemark-es/lib/Devel/StackTrace.pm
quast_libs/genemark-es/lib/Devel/StackTrace/Frame.pm
quast_libs/genemark-es/lib/Exception/Class.pm
quast_libs/genemark-es/lib/Exception/Class/Base.pm
quast_libs/genemark-es/lib/Hash/Merge.pm
quast_libs/genemark-es/lib/Logger/Simple.pm
quast_libs/genemark-es/lib/Object/InsideOut.pm
quast_libs/genemark-es/lib/Object/InsideOut.pod
quast_libs/genemark-es/lib/Object/InsideOut/Autoload.pm
quast_libs/genemark-es/lib/Object/InsideOut/Chained.pm
quast_libs/genemark-es/lib/Object/InsideOut/Cumulative.pm
quast_libs/genemark-es/lib/Object/InsideOut/Dump.pm
quast_libs/genemark-es/lib/Object/InsideOut/Dynamic.pm
quast_libs/genemark-es/lib/Object/InsideOut/Exception.pm
quast_libs/genemark-es/lib/Object/InsideOut/Foreign.pm
quast_libs/genemark-es/lib/Object/InsideOut/Metadata.pm
quast_libs/genemark-es/lib/Object/InsideOut/Overload.pm
quast_libs/genemark-es/lib/Object/InsideOut/Secure.pm
quast_libs/genemark-es/lib/Object/InsideOut/Universal.pm
quast_libs/genemark-es/lib/Object/InsideOut/Util.pm
quast_libs/genemark-es/lib/Object/InsideOut/attributes.pm
quast_libs/genemark-es/lib/Object/InsideOut/lvalue.pm
quast_libs/genemark-es/lib/Parallel/ForkManager.pm
quast_libs/genemark-es/lib/YAML/Any.pm
quast_libs/genemark-es/lib/YAML/Dumper.pm
quast_libs/genemark-es/lib/YAML/Error.pm
quast_libs/genemark-es/lib/YAML/Loader.pm
quast_libs/genemark-es/lib/YAML/Marshall.pm
quast_libs/genemark-es/lib/YAML/Mo.pm
quast_libs/genemark-es/lib/YAML/Node.pm
quast_libs/genemark-es/lib/YAML/Tag.pm
quast_libs/genemark-es/lib/YAML/Types.pm
quast_libs/genemark-es/lib/YAML/Dumper/Base.pm
quast_libs/genemark-es/lib/YAML/Loader/Base.pm
quast_libs/genemark-es/linux_32/Gibbs3
quast_libs/genemark-es/linux_32/LICENSE
quast_libs/genemark-es/linux_32/README.GeneMark-ET
quast_libs/genemark-es/linux_32/bet_to_gff.pl
quast_libs/genemark-es/linux_32/bp_seq_select.pl
quast_libs/genemark-es/linux_32/build_mod.pl
quast_libs/genemark-es/linux_32/gc_distr.pl
quast_libs/genemark-es/linux_32/get_sequence_from_GTF.pl
quast_libs/genemark-es/linux_32/gibbs-3.1.tar.gz
quast_libs/genemark-es/linux_32/gm_key
quast_libs/genemark-es/linux_32/gmes.cfg
quast_libs/genemark-es/linux_32/gmes_petap.pl
quast_libs/genemark-es/linux_32/gmhmme3
quast_libs/genemark-es/linux_32/histogram.pl
quast_libs/genemark-es/linux_32/hmm_to_gtf.pl
quast_libs/genemark-es/linux_32/make_nt_freq_mat.pl
quast_libs/genemark-es/linux_32/parse_ET.pl
quast_libs/genemark-es/linux_32/parse_by_introns.pl
quast_libs/genemark-es/linux_32/parse_gibbs.pl
quast_libs/genemark-es/linux_32/parse_set.pl
quast_libs/genemark-es/linux_32/predict_genes.pl
quast_libs/genemark-es/linux_32/prior.bp
quast_libs/genemark-es/linux_32/probuild
quast_libs/genemark-es/linux_32/reformat_fasta.pl
quast_libs/genemark-es/linux_32/reformat_gff.pl
quast_libs/genemark-es/linux_32/rescale_gff.pl
quast_libs/genemark-es/linux_32/rnaseq_introns_to_gff.pl
quast_libs/genemark-es/linux_32/run_hmm_pbs.pl
quast_libs/genemark-es/linux_32/scan_for_bp.pl
quast_libs/genemark-es/linux_32/verify_evidence_gmhmm.pl
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_32.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_33.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_34.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_35.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_36.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_37.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_38.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_39.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_40.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_41.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_42.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_43.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_44.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_45.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_46.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_47.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_48.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_49.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_50.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_51.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_52.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_53.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_54.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_55.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_56.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_57.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_58.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_59.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_60.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_61.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_62.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_63.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_64.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_65.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_66.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_67.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_68.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_69.mod
quast_libs/genemark-es/linux_32/heu_dir/heu_05_gcode_1_gc_70.mod
quast_libs/genemark-es/linux_32/lib/LineFit.pm
quast_libs/genemark-es/linux_32/lib/ReadBackwards.pm
quast_libs/genemark-es/linux_64/Gibbs3
quast_libs/genemark-es/linux_64/INSTALL
quast_libs/genemark-es/linux_64/LICENSE
quast_libs/genemark-es/linux_64/README.GeneMark-ES-suite
quast_libs/genemark-es/linux_64/bet_to_gff.pl
quast_libs/genemark-es/linux_64/bp_seq_select.pl
quast_libs/genemark-es/linux_64/build_mod.pl
quast_libs/genemark-es/linux_64/gc_distr.pl
quast_libs/genemark-es/linux_64/get_sequence_from_GTF.pl
quast_libs/genemark-es/linux_64/gibbs-3.1.tar.gz
quast_libs/genemark-es/linux_64/gm_key
quast_libs/genemark-es/linux_64/gmes.cfg
quast_libs/genemark-es/linux_64/gmes_petap.pl
quast_libs/genemark-es/linux_64/gmhmme3
quast_libs/genemark-es/linux_64/histogram.pl
quast_libs/genemark-es/linux_64/hmm_to_gtf.pl
quast_libs/genemark-es/linux_64/make_nt_freq_mat.pl
quast_libs/genemark-es/linux_64/parse_ET.pl
quast_libs/genemark-es/linux_64/parse_by_introns.pl
quast_libs/genemark-es/linux_64/parse_gibbs.pl
quast_libs/genemark-es/linux_64/parse_set.pl
quast_libs/genemark-es/linux_64/predict_genes.pl
quast_libs/genemark-es/linux_64/prior.bp
quast_libs/genemark-es/linux_64/probuild
quast_libs/genemark-es/linux_64/reformat_fasta.pl
quast_libs/genemark-es/linux_64/reformat_gff.pl
quast_libs/genemark-es/linux_64/rescale_gff.pl
quast_libs/genemark-es/linux_64/rnaseq_introns_to_gff.pl
quast_libs/genemark-es/linux_64/run_hmm_pbs.pl
quast_libs/genemark-es/linux_64/scan_for_bp.pl
quast_libs/genemark-es/linux_64/star_to_gff.pl
quast_libs/genemark-es/linux_64/verify_evidence_gmhmm.pl
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_32.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_33.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_34.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_35.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_36.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_37.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_38.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_39.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_40.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_41.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_42.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_43.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_44.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_45.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_46.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_47.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_48.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_49.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_50.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_51.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_52.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_53.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_54.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_55.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_56.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_57.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_58.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_59.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_60.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_61.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_62.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_63.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_64.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_65.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_66.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_67.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_68.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_69.mod
quast_libs/genemark-es/linux_64/heu_dir/heu_05_gcode_1_gc_70.mod
quast_libs/genemark-es/linux_64/lib/LineFit.pm
quast_libs/genemark-es/linux_64/lib/ReadBackwards.pm
quast_libs/genemark-es/macosx/Gibbs3
quast_libs/genemark-es/macosx/LICENSE
quast_libs/genemark-es/macosx/README.GeneMark-ET
quast_libs/genemark-es/macosx/bet_to_gff.pl
quast_libs/genemark-es/macosx/bp_seq_select.pl
quast_libs/genemark-es/macosx/build_mod.pl
quast_libs/genemark-es/macosx/gc_distr.pl
quast_libs/genemark-es/macosx/get_sequence_from_GTF.pl
quast_libs/genemark-es/macosx/gibbs-3.1.tar.gz
quast_libs/genemark-es/macosx/gm_key
quast_libs/genemark-es/macosx/gmes.cfg
quast_libs/genemark-es/macosx/gmes_petap.pl
quast_libs/genemark-es/macosx/gmhmme3
quast_libs/genemark-es/macosx/histogram.pl
quast_libs/genemark-es/macosx/hmm_to_gtf.pl
quast_libs/genemark-es/macosx/make_nt_freq_mat.pl
quast_libs/genemark-es/macosx/parse_ET.pl
quast_libs/genemark-es/macosx/parse_by_introns.pl
quast_libs/genemark-es/macosx/parse_gibbs.pl
quast_libs/genemark-es/macosx/parse_set.pl
quast_libs/genemark-es/macosx/predict_genes.pl
quast_libs/genemark-es/macosx/prior.bp
quast_libs/genemark-es/macosx/probuild
quast_libs/genemark-es/macosx/reformat_fasta.pl
quast_libs/genemark-es/macosx/reformat_gff.pl
quast_libs/genemark-es/macosx/rescale_gff.pl
quast_libs/genemark-es/macosx/rnaseq_introns_to_gff.pl
quast_libs/genemark-es/macosx/run_hmm_pbs.pl
quast_libs/genemark-es/macosx/scan_for_bp.pl
quast_libs/genemark-es/macosx/verify_evidence_gmhmm.pl
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_32.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_33.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_34.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_35.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_36.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_37.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_38.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_39.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_40.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_41.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_42.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_43.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_44.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_45.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_46.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_47.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_48.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_49.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_50.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_51.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_52.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_53.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_54.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_55.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_56.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_57.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_58.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_59.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_60.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_61.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_62.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_63.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_64.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_65.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_66.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_67.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_68.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_69.mod
quast_libs/genemark-es/macosx/heu_dir/heu_05_gcode_1_gc_70.mod
quast_libs/genemark-es/macosx/lib/LineFit.pm
quast_libs/genemark-es/macosx/lib/ReadBackwards.pm
quast_libs/genemark/linux_32/Gibbs3
quast_libs/genemark/linux_32/INSTALL
quast_libs/genemark/linux_32/LICENSE
quast_libs/genemark/linux_32/README.GeneMarkSuite
quast_libs/genemark/linux_32/README.MetaGeneMark
quast_libs/genemark/linux_32/README.heuristic
quast_libs/genemark/linux_32/gc
quast_libs/genemark/linux_32/gibbs
quast_libs/genemark/linux_32/gibbs-3.1.tar.gz
quast_libs/genemark/linux_32/gibbs9_95.tar.gz
quast_libs/genemark/linux_32/gm
quast_libs/genemark/linux_32/gm.pl
quast_libs/genemark/linux_32/gm_1.tbl
quast_libs/genemark/linux_32/gm_25.tbl
quast_libs/genemark/linux_32/gm_4.tbl
quast_libs/genemark/linux_32/gm_key
quast_libs/genemark/linux_32/gmhmmp
quast_libs/genemark/linux_32/gmhmmp.pl
quast_libs/genemark/linux_32/gmhmmp_heuristic.pl
quast_libs/genemark/linux_32/gmsn.pl
quast_libs/genemark/linux_32/heu_1.mod
quast_libs/genemark/linux_32/heu_11.mod
quast_libs/genemark/linux_32/heu_4.mod
quast_libs/genemark/linux_32/matinfo
quast_libs/genemark/linux_32/mkmat
quast_libs/genemark/linux_32/par_1.default
quast_libs/genemark/linux_32/par_11.default
quast_libs/genemark/linux_32/par_4.default
quast_libs/genemark/linux_32/par_EST.default
quast_libs/genemark/linux_32/probuild
quast_libs/genemark/linux_32/ps_gm_overlay.pl
quast_libs/genemark/linux_32/viewmat
quast_libs/genemark/linux_32/heuristic_mod/heu_11_30.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_31.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_32.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_33.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_34.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_35.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_36.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_37.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_38.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_39.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_40.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_41.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_42.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_43.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_44.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_45.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_46.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_47.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_48.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_49.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_50.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_51.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_52.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_53.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_54.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_55.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_56.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_57.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_58.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_59.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_60.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_61.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_62.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_63.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_64.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_65.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_66.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_67.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_68.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_69.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_11_70.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_30.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_31.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_32.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_33.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_34.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_35.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_36.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_37.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_38.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_39.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_40.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_41.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_42.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_43.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_44.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_45.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_46.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_47.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_48.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_49.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_50.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_51.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_52.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_53.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_54.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_55.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_56.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_57.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_58.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_59.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_60.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_61.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_62.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_63.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_64.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_65.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_66.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_67.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_68.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_69.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_1_70.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_30.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_31.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_32.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_33.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_34.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_35.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_36.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_37.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_38.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_39.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_40.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_41.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_42.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_43.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_44.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_45.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_46.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_47.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_48.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_49.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_50.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_51.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_52.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_53.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_54.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_55.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_56.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_57.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_58.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_59.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_60.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_61.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_62.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_63.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_64.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_65.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_66.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_67.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_68.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_69.mod
quast_libs/genemark/linux_32/heuristic_mod/heu_4_70.mod
quast_libs/genemark/linux_64/Gibbs3
quast_libs/genemark/linux_64/INSTALL
quast_libs/genemark/linux_64/LICENSE
quast_libs/genemark/linux_64/README.GeneMarkSuite
quast_libs/genemark/linux_64/README.MetaGeneMark
quast_libs/genemark/linux_64/README.heuristic
quast_libs/genemark/linux_64/gc
quast_libs/genemark/linux_64/gibbs
quast_libs/genemark/linux_64/gibbs-3.1.tar.gz
quast_libs/genemark/linux_64/gibbs9_95.tar.gz
quast_libs/genemark/linux_64/gm
quast_libs/genemark/linux_64/gm.pl
quast_libs/genemark/linux_64/gm_1.tbl
quast_libs/genemark/linux_64/gm_25.tbl
quast_libs/genemark/linux_64/gm_4.tbl
quast_libs/genemark/linux_64/gm_key
quast_libs/genemark/linux_64/gmhmmp
quast_libs/genemark/linux_64/gmhmmp.pl
quast_libs/genemark/linux_64/gmhmmp_heuristic.pl
quast_libs/genemark/linux_64/gmsn.pl
quast_libs/genemark/linux_64/heu_1.mod
quast_libs/genemark/linux_64/heu_11.mod
quast_libs/genemark/linux_64/heu_4.mod
quast_libs/genemark/linux_64/matinfo
quast_libs/genemark/linux_64/mkmat
quast_libs/genemark/linux_64/par_1.default
quast_libs/genemark/linux_64/par_11.default
quast_libs/genemark/linux_64/par_4.default
quast_libs/genemark/linux_64/par_EST.default
quast_libs/genemark/linux_64/probuild
quast_libs/genemark/linux_64/ps_gm_overlay.pl
quast_libs/genemark/linux_64/viewmat
quast_libs/genemark/linux_64/heuristic_mod/heu_11_30.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_31.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_32.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_33.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_34.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_35.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_36.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_37.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_38.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_39.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_40.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_41.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_42.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_43.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_44.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_45.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_46.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_47.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_48.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_49.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_50.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_51.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_52.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_53.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_54.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_55.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_56.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_57.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_58.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_59.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_60.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_61.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_62.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_63.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_64.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_65.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_66.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_67.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_68.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_69.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_11_70.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_30.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_31.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_32.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_33.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_34.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_35.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_36.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_37.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_38.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_39.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_40.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_41.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_42.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_43.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_44.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_45.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_46.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_47.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_48.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_49.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_50.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_51.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_52.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_53.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_54.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_55.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_56.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_57.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_58.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_59.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_60.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_61.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_62.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_63.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_64.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_65.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_66.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_67.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_68.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_69.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_1_70.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_30.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_31.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_32.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_33.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_34.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_35.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_36.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_37.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_38.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_39.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_40.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_41.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_42.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_43.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_44.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_45.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_46.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_47.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_48.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_49.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_50.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_51.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_52.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_53.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_54.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_55.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_56.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_57.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_58.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_59.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_60.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_61.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_62.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_63.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_64.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_65.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_66.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_67.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_68.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_69.mod
quast_libs/genemark/linux_64/heuristic_mod/heu_4_70.mod
quast_libs/genemark/macosx/Gibbs3
quast_libs/genemark/macosx/INSTALL
quast_libs/genemark/macosx/LICENSE
quast_libs/genemark/macosx/README.GeneMarkSuite
quast_libs/genemark/macosx/README.MetaGeneMark
quast_libs/genemark/macosx/README.heuristic
quast_libs/genemark/macosx/gc
quast_libs/genemark/macosx/gibbs
quast_libs/genemark/macosx/gibbs-3.1.tar.gz
quast_libs/genemark/macosx/gibbs9_95.tar.gz
quast_libs/genemark/macosx/gm
quast_libs/genemark/macosx/gm.pl
quast_libs/genemark/macosx/gm_1.tbl
quast_libs/genemark/macosx/gm_25.tbl
quast_libs/genemark/macosx/gm_4.tbl
quast_libs/genemark/macosx/gm_key
quast_libs/genemark/macosx/gm_key.tar
quast_libs/genemark/macosx/gmhmmp
quast_libs/genemark/macosx/gmhmmp.pl
quast_libs/genemark/macosx/gmhmmp_heuristic.pl
quast_libs/genemark/macosx/gmsn.pl
quast_libs/genemark/macosx/heu_1.mod
quast_libs/genemark/macosx/heu_11.mod
quast_libs/genemark/macosx/heu_4.mod
quast_libs/genemark/macosx/matinfo
quast_libs/genemark/macosx/mkmat
quast_libs/genemark/macosx/par_1.default
quast_libs/genemark/macosx/par_11.default
quast_libs/genemark/macosx/par_4.default
quast_libs/genemark/macosx/par_EST.default
quast_libs/genemark/macosx/probuild
quast_libs/genemark/macosx/ps_gm_overlay.pl
quast_libs/genemark/macosx/viewmat
quast_libs/genemark/macosx/heuristic_mod/heu_11_30.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_31.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_32.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_33.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_34.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_35.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_36.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_37.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_38.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_39.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_40.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_41.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_42.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_43.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_44.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_45.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_46.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_47.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_48.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_49.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_50.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_51.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_52.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_53.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_54.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_55.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_56.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_57.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_58.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_59.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_60.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_61.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_62.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_63.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_64.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_65.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_66.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_67.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_68.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_69.mod
quast_libs/genemark/macosx/heuristic_mod/heu_11_70.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_30.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_31.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_32.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_33.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_34.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_35.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_36.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_37.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_38.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_39.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_40.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_41.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_42.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_43.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_44.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_45.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_46.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_47.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_48.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_49.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_50.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_51.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_52.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_53.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_54.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_55.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_56.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_57.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_58.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_59.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_60.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_61.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_62.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_63.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_64.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_65.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_66.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_67.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_68.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_69.mod
quast_libs/genemark/macosx/heuristic_mod/heu_1_70.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_30.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_31.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_32.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_33.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_34.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_35.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_36.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_37.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_38.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_39.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_40.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_41.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_42.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_43.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_44.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_45.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_46.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_47.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_48.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_49.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_50.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_51.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_52.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_53.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_54.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_55.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_56.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_57.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_58.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_59.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_60.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_61.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_62.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_63.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_64.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_65.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_66.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_67.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_68.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_69.mod
quast_libs/genemark/macosx/heuristic_mod/heu_4_70.mod
quast_libs/glimmer/COPYRIGHT
quast_libs/glimmer/LICENSE
quast_libs/glimmer/README.first
quast_libs/glimmer/version_update
quast_libs/glimmer/src/context.h
quast_libs/glimmer/src/delcher.h
quast_libs/glimmer/src/gene.h
quast_libs/glimmer/src/glimmerhmm.c
quast_libs/glimmer/src/graph.c
quast_libs/glimmer/src/graph.h
quast_libs/glimmer/src/icm.h
quast_libs/glimmer/src/makefile
quast_libs/glimmer/src/oc1.h
quast_libs/glimmer/src/sites.c
quast_libs/glimmer/src/sites.h
quast_libs/glimmer/src/strarray.h
quast_libs/glimmer/src/tree_util_prob.c
quast_libs/glimmer/src/util.c
quast_libs/glimmer/trained/arabidopsis/acc.dt
quast_libs/glimmer/trained/arabidopsis/acc1.mar
quast_libs/glimmer/trained/arabidopsis/acc2
quast_libs/glimmer/trained/arabidopsis/acc4
quast_libs/glimmer/trained/arabidopsis/acc5
quast_libs/glimmer/trained/arabidopsis/acc6
quast_libs/glimmer/trained/arabidopsis/all.hexfreq
quast_libs/glimmer/trained/arabidopsis/atg.dt
quast_libs/glimmer/trained/arabidopsis/atg.markov
quast_libs/glimmer/trained/arabidopsis/coding_0_100.model
quast_libs/glimmer/trained/arabidopsis/config.file
quast_libs/glimmer/trained/arabidopsis/don.dt
quast_libs/glimmer/trained/arabidopsis/don1.mar
quast_libs/glimmer/trained/arabidopsis/don2
quast_libs/glimmer/trained/arabidopsis/don4
quast_libs/glimmer/trained/arabidopsis/don5
quast_libs/glimmer/trained/arabidopsis/don6
quast_libs/glimmer/trained/arabidopsis/exon.distr
quast_libs/glimmer/trained/arabidopsis/exon.hexfreq
quast_libs/glimmer/trained/arabidopsis/exonno.distr
quast_libs/glimmer/trained/arabidopsis/exons.dat
quast_libs/glimmer/trained/arabidopsis/false.acc
quast_libs/glimmer/trained/arabidopsis/false.atg
quast_libs/glimmer/trained/arabidopsis/false.don
quast_libs/glimmer/trained/arabidopsis/false.stop
quast_libs/glimmer/trained/arabidopsis/genelist
quast_libs/glimmer/trained/arabidopsis/noncoding_0_100.model
quast_libs/glimmer/trained/arabidopsis/outex
quast_libs/glimmer/trained/arabidopsis/outin
quast_libs/glimmer/trained/arabidopsis/score_ex.acc
quast_libs/glimmer/trained/arabidopsis/score_ex.don
quast_libs/glimmer/trained/arabidopsis/score_in.acc
quast_libs/glimmer/trained/arabidopsis/score_in.don
quast_libs/glimmer/trained/arabidopsis/seqs
quast_libs/glimmer/trained/arabidopsis/stop.dt
quast_libs/glimmer/trained/arabidopsis/stop.markov
quast_libs/glimmer/trained/arabidopsis/train_0_100.cfg
quast_libs/html_saver/__init__.py
quast_libs/html_saver/glossary.json
quast_libs/html_saver/html_saver.py
quast_libs/html_saver/icarus_menu_templ.html
quast_libs/html_saver/json_saver.py
quast_libs/html_saver/template.html
quast_libs/html_saver/viewers_template.html
quast_libs/html_saver/static/common.css
quast_libs/html_saver/static/d3.js
quast_libs/html_saver/static/dragtable.js
quast_libs/html_saver/static/icarus.css
quast_libs/html_saver/static/ie_html5.js
quast_libs/html_saver/static/jquery-1.7.2.min.js
quast_libs/html_saver/static/jquery-1.8.2.js
quast_libs/html_saver/static/jquery-1.8.2.min.js
quast_libs/html_saver/static/jquery-ui.js
quast_libs/html_saver/static/jquery.css
quast_libs/html_saver/static/report.css
quast_libs/html_saver/static/bootstrap/bootstrap-tooltip-5px-lower.min.js
quast_libs/html_saver/static/bootstrap/bootstrap-tooltip-vlad.js
quast_libs/html_saver/static/bootstrap/bootstrap.css
quast_libs/html_saver/static/bootstrap/bootstrap.min.css
quast_libs/html_saver/static/bootstrap/bootstrap.min.js
quast_libs/html_saver/static/flot/API.txt
quast_libs/html_saver/static/flot/FAQ.txt
quast_libs/html_saver/static/flot/LICENSE.txt
quast_libs/html_saver/static/flot/Makefile
quast_libs/html_saver/static/flot/NEWS.txt
quast_libs/html_saver/static/flot/PLUGINS.txt
quast_libs/html_saver/static/flot/README.txt
quast_libs/html_saver/static/flot/excanvas.js
quast_libs/html_saver/static/flot/excanvas.min.js
quast_libs/html_saver/static/flot/jquery.colorhelpers.js
quast_libs/html_saver/static/flot/jquery.colorhelpers.min.js
quast_libs/html_saver/static/flot/jquery.flot.crosshair.js
quast_libs/html_saver/static/flot/jquery.flot.crosshair.min.js
quast_libs/html_saver/static/flot/jquery.flot.dashes.js
quast_libs/html_saver/static/flot/jquery.flot.fillbetween.js
quast_libs/html_saver/static/flot/jquery.flot.fillbetween.min.js
quast_libs/html_saver/static/flot/jquery.flot.image.js
quast_libs/html_saver/static/flot/jquery.flot.image.min.js
quast_libs/html_saver/static/flot/jquery.flot.js
quast_libs/html_saver/static/flot/jquery.flot.min.js
quast_libs/html_saver/static/flot/jquery.flot.navigate.js
quast_libs/html_saver/static/flot/jquery.flot.navigate.min.js
quast_libs/html_saver/static/flot/jquery.flot.pie.js
quast_libs/html_saver/static/flot/jquery.flot.pie.min.js
quast_libs/html_saver/static/flot/jquery.flot.resize.js
quast_libs/html_saver/static/flot/jquery.flot.resize.min.js
quast_libs/html_saver/static/flot/jquery.flot.selection.js
quast_libs/html_saver/static/flot/jquery.flot.selection.min.js
quast_libs/html_saver/static/flot/jquery.flot.stack.js
quast_libs/html_saver/static/flot/jquery.flot.stack.min.js
quast_libs/html_saver/static/flot/jquery.flot.symbol.js
quast_libs/html_saver/static/flot/jquery.flot.symbol.min.js
quast_libs/html_saver/static/flot/jquery.flot.threshold.js
quast_libs/html_saver/static/flot/jquery.flot.threshold.min.js
quast_libs/html_saver/static/flot/jquery.flot.tickrotor.js
quast_libs/html_saver/static/flot/jquery.js
quast_libs/html_saver/static/flot/jquery.min.js
quast_libs/html_saver/static/img/draggable.png
quast_libs/html_saver/static/img/draggable_16p.png
quast_libs/html_saver/static/img/favicon.ico
quast_libs/html_saver/static/img/icon_plot.png
quast_libs/html_saver/static/img/quast_logo.png
quast_libs/html_saver/static/img/quast_logo_black.png
quast_libs/html_saver/static/img/semi-transparent-10px.png
quast_libs/html_saver/static/img/semi-transparent-10px.pxm
quast_libs/html_saver/static/scripts/build_icarus.js
quast_libs/html_saver/static/scripts/build_report.js
quast_libs/html_saver/static/scripts/build_report_common.js
quast_libs/html_saver/static/scripts/build_report_meta.js
quast_libs/html_saver/static/scripts/build_total_report.js
quast_libs/html_saver/static/scripts/build_total_report_common.js
quast_libs/html_saver/static/scripts/build_total_report_meta.js
quast_libs/html_saver/static/scripts/display_icarus.js
quast_libs/html_saver/static/scripts/draw_cumulative_plot.js
quast_libs/html_saver/static/scripts/draw_gc_plot.js
quast_libs/html_saver/static/scripts/draw_genes_plot.js
quast_libs/html_saver/static/scripts/draw_meta_misassembl_plot.js
quast_libs/html_saver/static/scripts/draw_metasummary_plot.js
quast_libs/html_saver/static/scripts/draw_nx_plot.js
quast_libs/html_saver/static/scripts/hsvToRgb.js
quast_libs/html_saver/static/scripts/icarus_interface.js
quast_libs/html_saver/static/scripts/icarus_utils.js
quast_libs/html_saver/static/scripts/lighter_darker.js
quast_libs/html_saver/static/scripts/utils.js
quast_libs/kronatools/LICENSE.txt
quast_libs/kronatools/img/favicon.ico
quast_libs/kronatools/img/favicon.uri
quast_libs/kronatools/img/hidden.png
quast_libs/kronatools/img/hidden.uri
quast_libs/kronatools/img/loading.gif
quast_libs/kronatools/img/loading.uri
quast_libs/kronatools/img/logo-small.png
quast_libs/kronatools/img/logo-small.uri
quast_libs/kronatools/lib/KronaTools.pm
quast_libs/kronatools/scripts/ImportText.pl
quast_libs/kronatools/src/krona-2.0.js
quast_libs/manta/__init__.py
quast_libs/manta/vcfToBedpe.py
quast_libs/sambamba/sambamba_linux
quast_libs/sambamba/sambamba_osx
quast_libs/site_packages/__init__.py
quast_libs/site_packages/_bz2.py
quast_libs/site_packages/_compression.py
quast_libs/site_packages/bz2.py
quast_libs/site_packages/ordered_dict.py
quast_libs/site_packages/joblib/__init__.py
quast_libs/site_packages/joblib/disk.py
quast_libs/site_packages/joblib/format_stack.py
quast_libs/site_packages/joblib/func_inspect.py
quast_libs/site_packages/joblib/hashing.py
quast_libs/site_packages/joblib/logger.py
quast_libs/site_packages/joblib/memory.py
quast_libs/site_packages/joblib/my_exceptions.py
quast_libs/site_packages/joblib/numpy_pickle.py
quast_libs/site_packages/joblib/parallel.py
quast_libs/site_packages/joblib/testing.py
quast_libs/site_packages/joblib3/__init__.py
quast_libs/site_packages/joblib3/_compat.py
quast_libs/site_packages/joblib3/_memory_helpers.py
quast_libs/site_packages/joblib3/_multiprocessing_helpers.py
quast_libs/site_packages/joblib3/disk.py
quast_libs/site_packages/joblib3/format_stack.py
quast_libs/site_packages/joblib3/func_inspect.py
quast_libs/site_packages/joblib3/hashing.py
quast_libs/site_packages/joblib3/logger.py
quast_libs/site_packages/joblib3/memory.py
quast_libs/site_packages/joblib3/my_exceptions.py
quast_libs/site_packages/joblib3/numpy_pickle.py
quast_libs/site_packages/joblib3/parallel.py
quast_libs/site_packages/joblib3/pool.py
quast_libs/site_packages/joblib3/testing.py
quast_libs/site_packages/jsontemplate/__init__.py
quast_libs/site_packages/jsontemplate/jsontemplate.py
quast_libs/site_packages/simplejson/__init__.py
quast_libs/site_packages/simplejson/_speedups.so
quast_libs/site_packages/simplejson/decoder.py
quast_libs/site_packages/simplejson/encoder.py
quast_libs/site_packages/simplejson/ordered_dict.py
quast_libs/site_packages/simplejson/scanner.py
quast_libs/site_packages/simplejson/tool.py
test_data/contigs_1.fasta
test_data/contigs_2.fasta
test_data/genes.bed
test_data/genes.gff
test_data/genes.ncbi
test_data/genes.txt
test_data/meta_contigs_1.fasta
test_data/meta_contigs_2.fasta
test_data/meta_ref_1.fasta
test_data/meta_ref_2.fasta
test_data/meta_ref_3.fasta
test_data/operons.bed
test_data/operons.gff
test_data/operons.txt
test_data/reads1.fastq.gz
test_data/reads2.fastq.gz
test_data/reference.fasta.gz