# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /Users/runner/work/1/s/recipes/python-bioext, last modified Mon Aug 19 04:46:14 2024
# ------------------------------------------------

package:
  name: python-bioext
  version: 0.21.8
source:
  patches:
    - cythonize.patch
    - osx-freetype.patch
  sha256: e19ccc6ba7dc1d2b4b13e1a0d6fa60fce626298c0b2e97012b5fc1a4535ea618
  url: https://pypi.io/packages/source/B/BioExt/bioext-0.21.8.tar.gz
build:
  number: '0'
  run_exports:
    - python-bioext >=0.21.8,<0.22.0a0
  string: py311hef12302_0
requirements:
  build:
    - ca-certificates 2024.7.4 h8857fd0_0
    - cctools_osx-64 986 h303a5ab_3
    - clang 16.0.6 default_h179603d_11
    - clang-16 16.0.6 default_h0c94c6a_11
    - clang_impl_osx-64 16.0.6 h8787910_19
    - clang_osx-64 16.0.6 hb91bd55_19
    - clangxx 16.0.6 default_h179603d_11
    - clangxx_impl_osx-64 16.0.6 h6d92fbe_19
    - clangxx_osx-64 16.0.6 hb91bd55_19
    - compiler-rt 16.0.6 ha38d28d_2
    - compiler-rt_osx-64 16.0.6 ha38d28d_2
    - icu 75.1 h120a0e1_0
    - ld64_osx-64 711 h04ffbf3_3
    - libclang-cpp16 16.0.6 default_h0c94c6a_11
    - libcxx 18.1.8 heced48a_4
    - libiconv 1.17 hd75f5a5_2
    - libllvm16 16.0.6 hbedff68_3
    - libxml2 2.12.7 heaf3512_4
    - libzlib 1.3.1 h87427d6_1
    - llvm-tools 16.0.6 hbedff68_3
    - openssl 3.3.1 h87427d6_2
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  host:
    - bzip2 1.0.8 hfdf4475_7
    - ca-certificates 2024.7.4 h8857fd0_0
    - cython 3.0.11 py311hbafa61a_0
    - libblas 3.9.0 22_osx64_openblas
    - libcblas 3.9.0 22_osx64_openblas
    - libcxx 18.1.8 heced48a_4
    - libexpat 2.6.2 h73e2aa4_0
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - liblapack 3.9.0 22_osx64_openblas
    - libopenblas 0.3.27 openmp_h8869122_1
    - libsqlite 3.46.0 h1b8f9f3_0
    - libzlib 1.3.1 h87427d6_1
    - llvm-openmp 18.1.8 h15ab845_1
    - ncurses 6.5 h5846eda_0
    - numpy 1.23.5 py311h62c7003_0
    - openssl 3.3.1 h87427d6_2
    - pip 24.2 pyhd8ed1ab_0
    - python 3.11.9 h657bba9_0_cpython
    - python_abi 3.11 5_cp311
    - readline 8.2 h9e318b2_1
    - setuptools 72.1.0 pyhd8ed1ab_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024a h0c530f3_0
    - wheel 0.44.0 pyhd8ed1ab_0
    - xz 5.2.6 h775f41a_0
  run:
    - biopython >=1.78
    - freetype
    - joblib
    - libcxx >=16
    - numpy >=1.23.5,<2.0a0
    - pysam
    - python >=3.11,<3.12.0a0
    - python_abi 3.11.* *_cp311
    - scipy
    - six
test:
  commands:
    - bam2fna 2>&1 | grep 'usage' > /dev/null
    - bam2msa 2>&1 | grep 'usage' > /dev/null
    - bealign 2>&1 | grep 'usage' > /dev/null
    - clipedge 2>&1 | grep 'usage' > /dev/null
    - msa2bam 2>&1 | grep 'usage' > /dev/null
    - seqmerge 2>&1 | grep 'usage' > /dev/null
  imports:
    - BioExt
    - BioExt.align
    - BioExt.args
    - BioExt.collections
    - BioExt.errorize
    - BioExt.freetype
    - BioExt.freetype.ft_enums
    - BioExt.io
    - BioExt.io.BamIO
    - BioExt.io.LazyAlignIO
    - BioExt.io.SamIO
    - BioExt.merge
    - BioExt.misc
    - BioExt.ndarray
    - BioExt.optimize
    - BioExt.orflist
    - BioExt.phylo
    - BioExt.rateclass
    - BioExt.references
    - BioExt.scorematrices
    - BioExt.stats
    - BioExt.tn93
    - BioExt.uds
    - BioExt.untranslate
about:
  home: https://github.com/veg/BioExt.git
  license: GPL-3
  license_family: GPL3
  summary: A few handy bioinformatics tools not already in BioPython
extra:
  copy_test_source_files: true
  final: true
