# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/pysam, last modified Fri Jul 10 20:32:53 2020
# ------------------------------------------------

package:
    name: pysam
    version: 0.16.0.1
source:
    sha256: a61e98e299fa93ba121aab521081282b61bc978bb9052d33b26b38f8fe15573e
    url: https://github.com/pysam-developers/pysam/archive/v0.16.0.1.tar.gz
build:
    number: '1'
    string: py37h3ee3bc3_1
requirements:
    build:
        - cctools 927.0.2 h5ba7a2e_4
        - clang 9.0.1 default_hf57f61e_0
        - clang-tools 9.0.1 default_hf57f61e_0
        - clang_osx-64 9.0.1 h05bbb7f_2
        - clangxx 9.0.1 default_hf57f61e_0
        - compiler-rt 9.0.1 h6a512c6_3
        - compiler-rt_osx-64 9.0.1 h99342c6_3
        - ld64 450.3 h3c32e8a_4
        - libcxx 10.0.0 h1af66ff_2
        - libllvm9 9.0.1 h7475705_1
        - llvm-tools 9.0.1 h1341992_1
        - llvmdev 9.0.1 h7475705_1
        - tapi 1000.10.8 ha1b3eb9_4
        - zlib 1.2.11 h0b31af3_1006
    host:
        - bzip2 1.0.8 h0b31af3_2
        - ca-certificates 2020.6.20 hecda079_0
        - certifi 2020.6.20 py37hc8dfbb8_0
        - cython 0.29.21 py37h570ac47_0
        - krb5 1.17.1 h14dd6a4_1
        - libcurl 7.71.1 he6690cf_1
        - libcxx 10.0.0 h1af66ff_2
        - libdeflate 1.6 h0b31af3_0
        - libedit 3.1.20191231 hed1e85f_1
        - libffi 3.2.1 h4a8c4bd_1007
        - libssh2 1.9.0 h39bdce6_3
        - ncurses 6.1 h0a44026_1002
        - openssl 1.1.1g h0b31af3_0
        - python 3.7.6 h90870a6_5_cpython
        - python_abi 3.7 1_cp37m
        - readline 8.0 hed1e85f_1
        - setuptools 49.1.1 py37hc8dfbb8_0
        - sqlite 3.32.3 h93121df_1
        - tk 8.6.10 hbbe82c9_0
        - xz 5.2.5 h0b31af3_1
        - zlib 1.2.11 h0b31af3_1006
    run:
        - bzip2 >=1.0.8,<2.0a0
        - bzip2 >=1.0.8,<2.0a0
        - libcurl >=7.71.1,<8.0a0
        - libcurl >=7.71.1,<8.0a0
        - libdeflate >=1.6,<1.7.0a0
        - python >=3.7,<3.8.0a0
        - python_abi 3.7.* *_cp37m
        - xz >=5.2.5,<5.3.0a0
        - xz >=5.2.5,<5.3.0a0
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - python -c "import pysam; import errno; exec(\"try:\n    pysam.AlignmentFile('s3:expect_invalid_argument')\nexcept
            EnvironmentError as e:\n    assert e.errno == errno.EINVAL\")"
    imports:
        - pysam
about:
    home: https://github.com/pysam-developers/pysam
    license: MIT
    summary: Pysam is a python module for reading and manipulating Samfiles. It is
        a lightweight wrapper of the samtools C-API. Pysam also includes an interface
        for tabix.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:pysam
        - doi:10.1093/bioinformatics/btp352
