from .bisections import bisect, percent_split, optimize_split_by_rclust
from .essentials import suggest_essential_reactions
from .limit_reactions import limit_reactions_by_compound
from .maps_to_proteins import suggest_reactions_without_proteins, suggest_reactions_with_proteins
from .media import suggest_from_media
from .orphan_compound import suggest_by_compound
from .probability import compound_probability
from .reaction_minimization import calculate_precision_recall
from .reaction_minimization import minimize_additional_reactions
from .reaction_minimization import minimize_by_accuracy, minimize_reactions
from .roles import suggest_from_roles
from .subsystem import suggest_reactions_from_subsystems
from .ecnumbers import suggest_reactions_using_ec
from .linked_reactions import suggest_linked_reactions
from .gapfill import gapfill
from .gapfill_two_media import gapfill_two_media

__all__ = ['suggest_reactions_using_ec',
           'suggest_from_media',
           'limit_reactions_by_compound',
           'suggest_by_compound',
           'suggest_essential_reactions', 'suggest_reactions_from_subsystems',
           'suggest_reactions_without_proteins', 'suggest_reactions_with_proteins',
           'suggest_from_roles', 'compound_probability', 'minimize_additional_reactions', 'minimize_reactions',
           'bisect', 'percent_split', 'optimize_split_by_rclust', 'minimize_by_accuracy',
           'calculate_precision_recall',
            'suggest_linked_reactions', 'gapfill',
           'gapfill_two_media'
           ]
