#!/Users/runner/bioconda/conda-bld/pybedtools_1595591469880/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_/bin/python
"""
Given 3 files, creates a 3-way Venn diagram of intersections using the Google \
Chart API; see :mod:`pybedtools.contrib.venn_maker` for more flexibility.

The values in the diagram assume:

    * unstranded intersections
    * no features that are nested inside larger features
"""

import argparse
import sys
import pybedtools
from six.moves import urllib


def venn_gchart(a, b, c=None, colors=None, labels=None, size="300x300"):
    """
    a, b, and c are filenames to BED-like files.

    *colors* is a list of 3 hex colors

    *labels* is a list of 3 labels

    *outfn* is the output PNG you want to create.

    *size* is the size in pixels for the PNG
    """
    a = pybedtools.BedTool(a)
    b = pybedtools.BedTool(b)
    if c:
        c = pybedtools.BedTool(c)

    # The order of values is meaningful to the API, see
    # http://code.google.com/apis/chart/docs/gallery/venn_charts.html
    if c:
        vals = [
            len(a),
            len(b),
            len(c),
            len(a + b),
            len(a + c),
            len(b + c),
            len(a + b + c),
        ]
    else:
        # insert 0 for size of 3rd circle.
        vals = [len(a), len(b), 0, len(a + b)]
        labels = labels[:2]
    # API doesn't seem to like large numbers, so get fractions instead, then
    # join make a comma-separated list of values.
    mx = float(max(vals))
    vals = [round(i / mx, 4) for i in vals]
    valstr = ",".join(map(str, vals))

    data = {"cht": "v", "chs": size, "chd": "t:" + valstr}

    # Add the optional data, if specified
    if labels:
        data["chdl"] = "|".join(labels)
    if colors:
        data["chco"] = ",".join(colors)
    return data


def gchart(data, outfn="out.png"):
    """
    Sends data to Google Chart API
    """
    data = urllib.parse.urlencode(data)
    binary_data = data.encode("UTF-8")

    url = "https://chart.googleapis.com/chart?"

    # Request and get the PNG
    req = urllib.request.Request(url, binary_data)
    print(url + data)
    response = urllib.request.urlopen(req)
    f = open(outfn, "w")
    f.write(response.read())
    f.close()


def main():
    """Create a 3-way Venn diagram using Google Charts API
    """

    op = argparse.ArgumentParser(description=__doc__, prog=sys.argv[0])
    op.add_argument("-a", help="File to use for the left-most circle")
    op.add_argument("-b", help="File to use for the right-most circle")
    op.add_argument("-c", help="File to use for the bottom circle")
    op.add_argument(
        "--colors",
        help="Optional comma-separated list of hex "
        "colors for circles a, b, and c.  E.g. %(default)s",
        default="00FF00,FF0000,0000FF",
    )
    op.add_argument(
        "--labels",
        help="Optional comma-separated list of labels for a, b, and c",
        default="a,b,c",
    )
    op.add_argument(
        "--size",
        default="300x300",
        help="Optional size of PNG, in pixels.  Default is " '"%(default)s"',
    )
    op.add_argument(
        "-o", default="out.png", help="Output file to save as, in PNG format"
    )
    op.add_argument(
        "--test", action="store_true", help="run test, overriding all other options."
    )
    options = op.parse_args()

    reqd_args = ["a", "b"]
    if not options.test:
        for ra in reqd_args:
            if not getattr(options, ra):
                op.print_help()
                sys.stderr.write('Missing required arg "%s"\n' % ra)
                sys.exit(1)

    if options.test:
        # Example data
        pybedtools.bedtool.random.seed(1)
        a = pybedtools.example_bedtool("rmsk.hg18.chr21.small.bed")
        b = pybedtools.example_bedtool("venn.b.bed")
        c = pybedtools.example_bedtool("venn.c.bed")
        options.a = a.fn
        options.b = b.fn
        options.c = c.fn
        options.colors = "00FF00,FF0000,0000FF"
        options.o = "out.png"
        options.labels = "a,b,c"

    data = venn_gchart(
        a=options.a,
        b=options.b,
        c=options.c,
        colors=options.colors.split(","),
        labels=options.labels.split(","),
        size=options.size,
    )
    gchart(data, outfn=options.o)


if __name__ == "__main__":
    import doctest

    if doctest.testmod(optionflags=doctest.ELLIPSIS).failed == 0:
        main()
