#!/usr/bin/env python3

import numpy as np
import tarfile
import re
import os
import pysam
import sys
from pysam import VariantFile
from scipy.spatial.distance import pdist
from scipy.cluster.hierarchy import average, fcluster
from pulp import LpProblem,LpMinimize,LpVariable
from iteration import Workflow
from reads_info import Reads
from argparse import ArgumentParser
import pickle
import gzip


__all__=['np','pysam','VariantFile','ArgumentParser'\
    ,'LpProblem','LpMinimize','LpVariable','tarfile','re','os','sys','pdist','average','fcluster','Workflow','pickle','gzip']
