
#default values for user options
version = '0.6.4'
input_table = ''
output_folder = ''
gene_catalog = '' 
uclust_file = ''
usearch = 'usearch'
vsearch = 'vsearch'
basename = ''
log_level = 'DEBUG'
verbose = 'DEBUG'
nprocesses = 1 
tshld_abund = 75
tshld_prev = 75
beta  = 0.75
bypass_prev_abund = False
tshld = None
centroid_prev_abund = None
#all_prevalence = None
#all_mean_abund = None
niche_flag = None
temp_folder = ''
centroids_list = ''
essantial_genes_uniref90_id = None
bypass_clustering = False

if __name__=='__main__':
	pass
