/* Generated by Cython 0.29.4 */

#define PY_SSIZE_T_CLEAN
#include "Python.h"
#ifndef Py_PYTHON_H
    #error Python headers needed to compile C extensions, please install development version of Python.
#elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03030000)
    #error Cython requires Python 2.6+ or Python 3.3+.
#else
#define CYTHON_ABI "0_29_4"
#define CYTHON_HEX_VERSION 0x001D04F0
#define CYTHON_FUTURE_DIVISION 0
#include <stddef.h>
#ifndef offsetof
  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
#endif
#if !defined(WIN32) && !defined(MS_WINDOWS)
  #ifndef __stdcall
    #define __stdcall
  #endif
  #ifndef __cdecl
    #define __cdecl
  #endif
  #ifndef __fastcall
    #define __fastcall
  #endif
#endif
#ifndef DL_IMPORT
  #define DL_IMPORT(t) t
#endif
#ifndef DL_EXPORT
  #define DL_EXPORT(t) t
#endif
#define __PYX_COMMA ,
#ifndef HAVE_LONG_LONG
  #if PY_VERSION_HEX >= 0x02070000
    #define HAVE_LONG_LONG
  #endif
#endif
#ifndef PY_LONG_LONG
  #define PY_LONG_LONG LONG_LONG
#endif
#ifndef Py_HUGE_VAL
  #define Py_HUGE_VAL HUGE_VAL
#endif
#ifdef PYPY_VERSION
  #define CYTHON_COMPILING_IN_PYPY 1
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #undef CYTHON_USE_TYPE_SLOTS
  #define CYTHON_USE_TYPE_SLOTS 0
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #if PY_VERSION_HEX < 0x03050000
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #undef CYTHON_USE_UNICODE_INTERNALS
  #define CYTHON_USE_UNICODE_INTERNALS 0
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #undef CYTHON_AVOID_BORROWED_REFS
  #define CYTHON_AVOID_BORROWED_REFS 1
  #undef CYTHON_ASSUME_SAFE_MACROS
  #define CYTHON_ASSUME_SAFE_MACROS 0
  #undef CYTHON_UNPACK_METHODS
  #define CYTHON_UNPACK_METHODS 0
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
#elif defined(PYSTON_VERSION)
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 1
  #define CYTHON_COMPILING_IN_CPYTHON 0
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #undef CYTHON_USE_PYTYPE_LOOKUP
  #define CYTHON_USE_PYTYPE_LOOKUP 0
  #undef CYTHON_USE_ASYNC_SLOTS
  #define CYTHON_USE_ASYNC_SLOTS 0
  #undef CYTHON_USE_PYLIST_INTERNALS
  #define CYTHON_USE_PYLIST_INTERNALS 0
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #undef CYTHON_USE_UNICODE_WRITER
  #define CYTHON_USE_UNICODE_WRITER 0
  #undef CYTHON_USE_PYLONG_INTERNALS
  #define CYTHON_USE_PYLONG_INTERNALS 0
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #undef CYTHON_FAST_THREAD_STATE
  #define CYTHON_FAST_THREAD_STATE 0
  #undef CYTHON_FAST_PYCALL
  #define CYTHON_FAST_PYCALL 0
  #undef CYTHON_PEP489_MULTI_PHASE_INIT
  #define CYTHON_PEP489_MULTI_PHASE_INIT 0
  #undef CYTHON_USE_TP_FINALIZE
  #define CYTHON_USE_TP_FINALIZE 0
  #undef CYTHON_USE_DICT_VERSIONS
  #define CYTHON_USE_DICT_VERSIONS 0
  #undef CYTHON_USE_EXC_INFO_STACK
  #define CYTHON_USE_EXC_INFO_STACK 0
#else
  #define CYTHON_COMPILING_IN_PYPY 0
  #define CYTHON_COMPILING_IN_PYSTON 0
  #define CYTHON_COMPILING_IN_CPYTHON 1
  #ifndef CYTHON_USE_TYPE_SLOTS
    #define CYTHON_USE_TYPE_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYTYPE_LOOKUP
    #define CYTHON_USE_PYTYPE_LOOKUP 0
  #elif !defined(CYTHON_USE_PYTYPE_LOOKUP)
    #define CYTHON_USE_PYTYPE_LOOKUP 1
  #endif
  #if PY_MAJOR_VERSION < 3
    #undef CYTHON_USE_ASYNC_SLOTS
    #define CYTHON_USE_ASYNC_SLOTS 0
  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
    #define CYTHON_USE_ASYNC_SLOTS 1
  #endif
  #if PY_VERSION_HEX < 0x02070000
    #undef CYTHON_USE_PYLONG_INTERNALS
    #define CYTHON_USE_PYLONG_INTERNALS 0
  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
    #define CYTHON_USE_PYLONG_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_PYLIST_INTERNALS
    #define CYTHON_USE_PYLIST_INTERNALS 1
  #endif
  #ifndef CYTHON_USE_UNICODE_INTERNALS
    #define CYTHON_USE_UNICODE_INTERNALS 1
  #endif
  #if PY_VERSION_HEX < 0x030300F0
    #undef CYTHON_USE_UNICODE_WRITER
    #define CYTHON_USE_UNICODE_WRITER 0
  #elif !defined(CYTHON_USE_UNICODE_WRITER)
    #define CYTHON_USE_UNICODE_WRITER 1
  #endif
  #ifndef CYTHON_AVOID_BORROWED_REFS
    #define CYTHON_AVOID_BORROWED_REFS 0
  #endif
  #ifndef CYTHON_ASSUME_SAFE_MACROS
    #define CYTHON_ASSUME_SAFE_MACROS 1
  #endif
  #ifndef CYTHON_UNPACK_METHODS
    #define CYTHON_UNPACK_METHODS 1
  #endif
  #ifndef CYTHON_FAST_THREAD_STATE
    #define CYTHON_FAST_THREAD_STATE 1
  #endif
  #ifndef CYTHON_FAST_PYCALL
    #define CYTHON_FAST_PYCALL 1
  #endif
  #ifndef CYTHON_PEP489_MULTI_PHASE_INIT
    #define CYTHON_PEP489_MULTI_PHASE_INIT (PY_VERSION_HEX >= 0x03050000)
  #endif
  #ifndef CYTHON_USE_TP_FINALIZE
    #define CYTHON_USE_TP_FINALIZE (PY_VERSION_HEX >= 0x030400a1)
  #endif
  #ifndef CYTHON_USE_DICT_VERSIONS
    #define CYTHON_USE_DICT_VERSIONS (PY_VERSION_HEX >= 0x030600B1)
  #endif
  #ifndef CYTHON_USE_EXC_INFO_STACK
    #define CYTHON_USE_EXC_INFO_STACK (PY_VERSION_HEX >= 0x030700A3)
  #endif
#endif
#if !defined(CYTHON_FAST_PYCCALL)
#define CYTHON_FAST_PYCCALL  (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
#endif
#if CYTHON_USE_PYLONG_INTERNALS
  #include "longintrepr.h"
  #undef SHIFT
  #undef BASE
  #undef MASK
  #ifdef SIZEOF_VOID_P
    enum { __pyx_check_sizeof_voidp = 1 / (int)(SIZEOF_VOID_P == sizeof(void*)) };
  #endif
#endif
#ifndef __has_attribute
  #define __has_attribute(x) 0
#endif
#ifndef __has_cpp_attribute
  #define __has_cpp_attribute(x) 0
#endif
#ifndef CYTHON_RESTRICT
  #if defined(__GNUC__)
    #define CYTHON_RESTRICT __restrict__
  #elif defined(_MSC_VER) && _MSC_VER >= 1400
    #define CYTHON_RESTRICT __restrict
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_RESTRICT restrict
  #else
    #define CYTHON_RESTRICT
  #endif
#endif
#ifndef CYTHON_UNUSED
# if defined(__GNUC__)
#   if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
#     define CYTHON_UNUSED __attribute__ ((__unused__))
#   else
#     define CYTHON_UNUSED
#   endif
# elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
#   define CYTHON_UNUSED __attribute__ ((__unused__))
# else
#   define CYTHON_UNUSED
# endif
#endif
#ifndef CYTHON_MAYBE_UNUSED_VAR
#  if defined(__cplusplus)
     template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
#  else
#    define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
#  endif
#endif
#ifndef CYTHON_NCP_UNUSED
# if CYTHON_COMPILING_IN_CPYTHON
#  define CYTHON_NCP_UNUSED
# else
#  define CYTHON_NCP_UNUSED CYTHON_UNUSED
# endif
#endif
#define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
#ifdef _MSC_VER
    #ifndef _MSC_STDINT_H_
        #if _MSC_VER < 1300
           typedef unsigned char     uint8_t;
           typedef unsigned int      uint32_t;
        #else
           typedef unsigned __int8   uint8_t;
           typedef unsigned __int32  uint32_t;
        #endif
    #endif
#else
   #include <stdint.h>
#endif
#ifndef CYTHON_FALLTHROUGH
  #if defined(__cplusplus) && __cplusplus >= 201103L
    #if __has_cpp_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH [[fallthrough]]
    #elif __has_cpp_attribute(clang::fallthrough)
      #define CYTHON_FALLTHROUGH [[clang::fallthrough]]
    #elif __has_cpp_attribute(gnu::fallthrough)
      #define CYTHON_FALLTHROUGH [[gnu::fallthrough]]
    #endif
  #endif
  #ifndef CYTHON_FALLTHROUGH
    #if __has_attribute(fallthrough)
      #define CYTHON_FALLTHROUGH __attribute__((fallthrough))
    #else
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
  #if defined(__clang__ ) && defined(__apple_build_version__)
    #if __apple_build_version__ < 7000000
      #undef  CYTHON_FALLTHROUGH
      #define CYTHON_FALLTHROUGH
    #endif
  #endif
#endif

#ifndef CYTHON_INLINE
  #if defined(__clang__)
    #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
  #elif defined(__GNUC__)
    #define CYTHON_INLINE __inline__
  #elif defined(_MSC_VER)
    #define CYTHON_INLINE __inline
  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define CYTHON_INLINE inline
  #else
    #define CYTHON_INLINE
  #endif
#endif

#if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
  #define Py_OptimizeFlag 0
#endif
#define __PYX_BUILD_PY_SSIZE_T "n"
#define CYTHON_FORMAT_SSIZE_T "z"
#if PY_MAJOR_VERSION < 3
  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyClass_Type
#else
  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
          PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
  #define __Pyx_DefaultClassType PyType_Type
#endif
#ifndef Py_TPFLAGS_CHECKTYPES
  #define Py_TPFLAGS_CHECKTYPES 0
#endif
#ifndef Py_TPFLAGS_HAVE_INDEX
  #define Py_TPFLAGS_HAVE_INDEX 0
#endif
#ifndef Py_TPFLAGS_HAVE_NEWBUFFER
  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
#endif
#ifndef Py_TPFLAGS_HAVE_FINALIZE
  #define Py_TPFLAGS_HAVE_FINALIZE 0
#endif
#ifndef METH_STACKLESS
  #define METH_STACKLESS 0
#endif
#if PY_VERSION_HEX <= 0x030700A3 || !defined(METH_FASTCALL)
  #ifndef METH_FASTCALL
     #define METH_FASTCALL 0x80
  #endif
  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject *const *args, Py_ssize_t nargs);
  typedef PyObject *(*__Pyx_PyCFunctionFastWithKeywords) (PyObject *self, PyObject *const *args,
                                                          Py_ssize_t nargs, PyObject *kwnames);
#else
  #define __Pyx_PyCFunctionFast _PyCFunctionFast
  #define __Pyx_PyCFunctionFastWithKeywords _PyCFunctionFastWithKeywords
#endif
#if CYTHON_FAST_PYCCALL
#define __Pyx_PyFastCFunction_Check(func)\
    ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)))))
#else
#define __Pyx_PyFastCFunction_Check(func) 0
#endif
#if CYTHON_USE_DICT_VERSIONS
#define __PYX_GET_DICT_VERSION(dict)  (((PyDictObject*)(dict))->ma_version_tag)
#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)\
    (version_var) = __PYX_GET_DICT_VERSION(dict);\
    (cache_var) = (value);
#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP) {\
        static PY_UINT64_T __pyx_dict_version = 0;\
        static PyObject *__pyx_dict_cached_value = NULL;\
        if (likely(__PYX_GET_DICT_VERSION(DICT) == __pyx_dict_version)) {\
            (VAR) = __pyx_dict_cached_value;\
        } else {\
            (VAR) = __pyx_dict_cached_value = (LOOKUP);\
            __pyx_dict_version = __PYX_GET_DICT_VERSION(DICT);\
        }\
    }
#else
#define __PYX_GET_DICT_VERSION(dict)  (0)
#define __PYX_UPDATE_DICT_CACHE(dict, value, cache_var, version_var)
#define __PYX_PY_DICT_LOOKUP_IF_MODIFIED(VAR, DICT, LOOKUP)  (VAR) = (LOOKUP);
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
  #define PyObject_Malloc(s)   PyMem_Malloc(s)
  #define PyObject_Free(p)     PyMem_Free(p)
  #define PyObject_Realloc(p)  PyMem_Realloc(p)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX < 0x030400A1
  #define PyMem_RawMalloc(n)           PyMem_Malloc(n)
  #define PyMem_RawRealloc(p, n)       PyMem_Realloc(p, n)
  #define PyMem_RawFree(p)             PyMem_Free(p)
#endif
#if CYTHON_COMPILING_IN_PYSTON
  #define __Pyx_PyCode_HasFreeVars(co)  PyCode_HasFreeVars(co)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
#else
  #define __Pyx_PyCode_HasFreeVars(co)  (PyCode_GetNumFree(co) > 0)
  #define __Pyx_PyFrame_SetLineNumber(frame, lineno)  (frame)->f_lineno = (lineno)
#endif
#if !CYTHON_FAST_THREAD_STATE || PY_VERSION_HEX < 0x02070000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#elif PY_VERSION_HEX >= 0x03060000
  #define __Pyx_PyThreadState_Current _PyThreadState_UncheckedGet()
#elif PY_VERSION_HEX >= 0x03000000
  #define __Pyx_PyThreadState_Current PyThreadState_GET()
#else
  #define __Pyx_PyThreadState_Current _PyThreadState_Current
#endif
#if PY_VERSION_HEX < 0x030700A2 && !defined(PyThread_tss_create) && !defined(Py_tss_NEEDS_INIT)
#include "pythread.h"
#define Py_tss_NEEDS_INIT 0
typedef int Py_tss_t;
static CYTHON_INLINE int PyThread_tss_create(Py_tss_t *key) {
  *key = PyThread_create_key();
  return 0;
}
static CYTHON_INLINE Py_tss_t * PyThread_tss_alloc(void) {
  Py_tss_t *key = (Py_tss_t *)PyObject_Malloc(sizeof(Py_tss_t));
  *key = Py_tss_NEEDS_INIT;
  return key;
}
static CYTHON_INLINE void PyThread_tss_free(Py_tss_t *key) {
  PyObject_Free(key);
}
static CYTHON_INLINE int PyThread_tss_is_created(Py_tss_t *key) {
  return *key != Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE void PyThread_tss_delete(Py_tss_t *key) {
  PyThread_delete_key(*key);
  *key = Py_tss_NEEDS_INIT;
}
static CYTHON_INLINE int PyThread_tss_set(Py_tss_t *key, void *value) {
  return PyThread_set_key_value(*key, value);
}
static CYTHON_INLINE void * PyThread_tss_get(Py_tss_t *key) {
  return PyThread_get_key_value(*key);
}
#endif
#if CYTHON_COMPILING_IN_CPYTHON || defined(_PyDict_NewPresized)
#define __Pyx_PyDict_NewPresized(n)  ((n <= 8) ? PyDict_New() : _PyDict_NewPresized(n))
#else
#define __Pyx_PyDict_NewPresized(n)  PyDict_New()
#endif
#if PY_MAJOR_VERSION >= 3 || CYTHON_FUTURE_DIVISION
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_TrueDivide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceTrueDivide(x,y)
#else
  #define __Pyx_PyNumber_Divide(x,y)         PyNumber_Divide(x,y)
  #define __Pyx_PyNumber_InPlaceDivide(x,y)  PyNumber_InPlaceDivide(x,y)
#endif
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1 && CYTHON_USE_UNICODE_INTERNALS
#define __Pyx_PyDict_GetItemStr(dict, name)  _PyDict_GetItem_KnownHash(dict, name, ((PyASCIIObject *) name)->hash)
#else
#define __Pyx_PyDict_GetItemStr(dict, name)  PyDict_GetItem(dict, name)
#endif
#if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
  #define CYTHON_PEP393_ENABLED 1
  #define __Pyx_PyUnicode_READY(op)       (likely(PyUnicode_IS_READY(op)) ?\
                                              0 : _PyUnicode_Ready((PyObject *)(op)))
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_LENGTH(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   PyUnicode_MAX_CHAR_VALUE(u)
  #define __Pyx_PyUnicode_KIND(u)         PyUnicode_KIND(u)
  #define __Pyx_PyUnicode_DATA(u)         PyUnicode_DATA(u)
  #define __Pyx_PyUnicode_READ(k, d, i)   PyUnicode_READ(k, d, i)
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  PyUnicode_WRITE(k, d, i, ch)
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
#else
  #define CYTHON_PEP393_ENABLED 0
  #define PyUnicode_1BYTE_KIND  1
  #define PyUnicode_2BYTE_KIND  2
  #define PyUnicode_4BYTE_KIND  4
  #define __Pyx_PyUnicode_READY(op)       (0)
  #define __Pyx_PyUnicode_GET_LENGTH(u)   PyUnicode_GET_SIZE(u)
  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u)   ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
  #define __Pyx_PyUnicode_KIND(u)         (sizeof(Py_UNICODE))
  #define __Pyx_PyUnicode_DATA(u)         ((void*)PyUnicode_AS_UNICODE(u))
  #define __Pyx_PyUnicode_READ(k, d, i)   ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
  #define __Pyx_PyUnicode_WRITE(k, d, i, ch)  (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
  #define __Pyx_PyUnicode_IS_TRUE(u)      (0 != PyUnicode_GET_SIZE(u))
#endif
#if CYTHON_COMPILING_IN_PYPY
  #define __Pyx_PyUnicode_Concat(a, b)      PyNumber_Add(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  PyNumber_Add(a, b)
#else
  #define __Pyx_PyUnicode_Concat(a, b)      PyUnicode_Concat(a, b)
  #define __Pyx_PyUnicode_ConcatSafe(a, b)  ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
      PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
  #define PyUnicode_Contains(u, s)  PySequence_Contains(u, s)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
  #define PyByteArray_Check(obj)  PyObject_TypeCheck(obj, &PyByteArray_Type)
#endif
#if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
  #define PyObject_Format(obj, fmt)  PyObject_CallMethod(obj, "__format__", "O", fmt)
#endif
#define __Pyx_PyString_FormatSafe(a, b)   ((unlikely((a) == Py_None || (PyString_Check(b) && !PyString_CheckExact(b)))) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
#define __Pyx_PyUnicode_FormatSafe(a, b)  ((unlikely((a) == Py_None || (PyUnicode_Check(b) && !PyUnicode_CheckExact(b)))) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyString_Format(a, b)  PyUnicode_Format(a, b)
#else
  #define __Pyx_PyString_Format(a, b)  PyString_Format(a, b)
#endif
#if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
  #define PyObject_ASCII(o)            PyObject_Repr(o)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBaseString_Type            PyUnicode_Type
  #define PyStringObject               PyUnicodeObject
  #define PyString_Type                PyUnicode_Type
  #define PyString_Check               PyUnicode_Check
  #define PyString_CheckExact          PyUnicode_CheckExact
  #define PyObject_Unicode             PyObject_Str
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
#else
  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
#endif
#ifndef PySet_CheckExact
  #define PySet_CheckExact(obj)        (Py_TYPE(obj) == &PySet_Type)
#endif
#if CYTHON_ASSUME_SAFE_MACROS
  #define __Pyx_PySequence_SIZE(seq)  Py_SIZE(seq)
#else
  #define __Pyx_PySequence_SIZE(seq)  PySequence_Size(seq)
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyIntObject                  PyLongObject
  #define PyInt_Type                   PyLong_Type
  #define PyInt_Check(op)              PyLong_Check(op)
  #define PyInt_CheckExact(op)         PyLong_CheckExact(op)
  #define PyInt_FromString             PyLong_FromString
  #define PyInt_FromUnicode            PyLong_FromUnicode
  #define PyInt_FromLong               PyLong_FromLong
  #define PyInt_FromSize_t             PyLong_FromSize_t
  #define PyInt_FromSsize_t            PyLong_FromSsize_t
  #define PyInt_AsLong                 PyLong_AsLong
  #define PyInt_AS_LONG                PyLong_AS_LONG
  #define PyInt_AsSsize_t              PyLong_AsSsize_t
  #define PyInt_AsUnsignedLongMask     PyLong_AsUnsignedLongMask
  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
  #define PyNumber_Int                 PyNumber_Long
#endif
#if PY_MAJOR_VERSION >= 3
  #define PyBoolObject                 PyLongObject
#endif
#if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
  #ifndef PyUnicode_InternFromString
    #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
  #endif
#endif
#if PY_VERSION_HEX < 0x030200A4
  typedef long Py_hash_t;
  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
  #define __Pyx_PyInt_AsHash_t   PyInt_AsLong
#else
  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
  #define __Pyx_PyInt_AsHash_t   PyInt_AsSsize_t
#endif
#if PY_MAJOR_VERSION >= 3
  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : (Py_INCREF(func), func))
#else
  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
#endif
#if CYTHON_USE_ASYNC_SLOTS
  #if PY_VERSION_HEX >= 0x030500B1
    #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
    #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
  #else
    #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
  #endif
#else
  #define __Pyx_PyType_AsAsync(obj) NULL
#endif
#ifndef __Pyx_PyAsyncMethodsStruct
    typedef struct {
        unaryfunc am_await;
        unaryfunc am_aiter;
        unaryfunc am_anext;
    } __Pyx_PyAsyncMethodsStruct;
#endif

#if defined(WIN32) || defined(MS_WINDOWS)
  #define _USE_MATH_DEFINES
#endif
#include <math.h>
#ifdef NAN
#define __PYX_NAN() ((float) NAN)
#else
static CYTHON_INLINE float __PYX_NAN() {
  float value;
  memset(&value, 0xFF, sizeof(value));
  return value;
}
#endif
#if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
#define __Pyx_truncl trunc
#else
#define __Pyx_truncl truncl
#endif


#define __PYX_ERR(f_index, lineno, Ln_error) \
{ \
  __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
}

#ifndef __PYX_EXTERN_C
  #ifdef __cplusplus
    #define __PYX_EXTERN_C extern "C"
  #else
    #define __PYX_EXTERN_C extern
  #endif
#endif

#define __PYX_HAVE__cwindow
#define __PYX_HAVE_API__cwindow
/* Early includes */
#include <string.h>
#include <stdio.h>
#include "pythread.h"
#include "stdlib.h"
#include "math.h"
#include "stdio.h"
#include "ctype.h"
#include "string.h"
#include "stdint.h"
#include "htslib/bgzf.h"
#include "htslib/hts.h"
#include "htslib/sam.h"
#ifdef _OPENMP
#include <omp.h>
#endif /* _OPENMP */

#if defined(PYREX_WITHOUT_ASSERTIONS) && !defined(CYTHON_WITHOUT_ASSERTIONS)
#define CYTHON_WITHOUT_ASSERTIONS
#endif

typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
                const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;

#define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
#define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0
#define __PYX_DEFAULT_STRING_ENCODING ""
#define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
#define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#define __Pyx_uchar_cast(c) ((unsigned char)c)
#define __Pyx_long_cast(x) ((long)x)
#define __Pyx_fits_Py_ssize_t(v, type, is_signed)  (\
    (sizeof(type) < sizeof(Py_ssize_t))  ||\
    (sizeof(type) > sizeof(Py_ssize_t) &&\
          likely(v < (type)PY_SSIZE_T_MAX ||\
                 v == (type)PY_SSIZE_T_MAX)  &&\
          (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
                                v == (type)PY_SSIZE_T_MIN)))  ||\
    (sizeof(type) == sizeof(Py_ssize_t) &&\
          (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
                               v == (type)PY_SSIZE_T_MAX)))  )
static CYTHON_INLINE int __Pyx_is_valid_index(Py_ssize_t i, Py_ssize_t limit) {
    return (size_t) i < (size_t) limit;
}
#if defined (__cplusplus) && __cplusplus >= 201103L
    #include <cstdlib>
    #define __Pyx_sst_abs(value) std::abs(value)
#elif SIZEOF_INT >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) abs(value)
#elif SIZEOF_LONG >= SIZEOF_SIZE_T
    #define __Pyx_sst_abs(value) labs(value)
#elif defined (_MSC_VER)
    #define __Pyx_sst_abs(value) ((Py_ssize_t)_abs64(value))
#elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
    #define __Pyx_sst_abs(value) llabs(value)
#elif defined (__GNUC__)
    #define __Pyx_sst_abs(value) __builtin_llabs(value)
#else
    #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject*);
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
#define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
#define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
#define __Pyx_PyBytes_FromString        PyBytes_FromString
#define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
#if PY_MAJOR_VERSION < 3
    #define __Pyx_PyStr_FromString        __Pyx_PyBytes_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
#else
    #define __Pyx_PyStr_FromString        __Pyx_PyUnicode_FromString
    #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
#endif
#define __Pyx_PyBytes_AsWritableString(s)     ((char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableSString(s)    ((signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsWritableUString(s)    ((unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsString(s)     ((const char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsSString(s)    ((const signed char*) PyBytes_AS_STRING(s))
#define __Pyx_PyBytes_AsUString(s)    ((const unsigned char*) PyBytes_AS_STRING(s))
#define __Pyx_PyObject_AsWritableString(s)    ((char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableSString(s)    ((signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsWritableUString(s)    ((unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsSString(s)    ((const signed char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_AsUString(s)    ((const unsigned char*) __Pyx_PyObject_AsString(s))
#define __Pyx_PyObject_FromCString(s)  __Pyx_PyObject_FromString((const char*)s)
#define __Pyx_PyBytes_FromCString(s)   __Pyx_PyBytes_FromString((const char*)s)
#define __Pyx_PyByteArray_FromCString(s)   __Pyx_PyByteArray_FromString((const char*)s)
#define __Pyx_PyStr_FromCString(s)     __Pyx_PyStr_FromString((const char*)s)
#define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u) {
    const Py_UNICODE *u_end = u;
    while (*u_end++) ;
    return (size_t)(u_end - u - 1);
}
#define __Pyx_PyUnicode_FromUnicode(u)       PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
#define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
#define __Pyx_PyUnicode_AsUnicode            PyUnicode_AsUnicode
#define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
#define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b);
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject*);
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
#define __Pyx_PySequence_Tuple(obj)\
    (likely(PyTuple_CheckExact(obj)) ? __Pyx_NewRef(obj) : PySequence_Tuple(obj))
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
#if CYTHON_ASSUME_SAFE_MACROS
#define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
#else
#define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
#endif
#define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
#if PY_MAJOR_VERSION >= 3
#define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
#else
#define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
#endif
#define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
static int __Pyx_sys_getdefaultencoding_not_ascii;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    PyObject* ascii_chars_u = NULL;
    PyObject* ascii_chars_b = NULL;
    const char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    if (strcmp(default_encoding_c, "ascii") == 0) {
        __Pyx_sys_getdefaultencoding_not_ascii = 0;
    } else {
        char ascii_chars[128];
        int c;
        for (c = 0; c < 128; c++) {
            ascii_chars[c] = c;
        }
        __Pyx_sys_getdefaultencoding_not_ascii = 1;
        ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
        if (!ascii_chars_u) goto bad;
        ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
        if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
            PyErr_Format(
                PyExc_ValueError,
                "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
                default_encoding_c);
            goto bad;
        }
        Py_DECREF(ascii_chars_u);
        Py_DECREF(ascii_chars_b);
    }
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    Py_XDECREF(ascii_chars_u);
    Py_XDECREF(ascii_chars_b);
    return -1;
}
#endif
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
#else
#define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
#if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
static char* __PYX_DEFAULT_STRING_ENCODING;
static int __Pyx_init_sys_getdefaultencoding_params(void) {
    PyObject* sys;
    PyObject* default_encoding = NULL;
    char* default_encoding_c;
    sys = PyImport_ImportModule("sys");
    if (!sys) goto bad;
    default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
    Py_DECREF(sys);
    if (!default_encoding) goto bad;
    default_encoding_c = PyBytes_AsString(default_encoding);
    if (!default_encoding_c) goto bad;
    __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c) + 1);
    if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
    strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
    Py_DECREF(default_encoding);
    return 0;
bad:
    Py_XDECREF(default_encoding);
    return -1;
}
#endif
#endif


/* Test for GCC > 2.95 */
#if defined(__GNUC__)     && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
  #define likely(x)   __builtin_expect(!!(x), 1)
  #define unlikely(x) __builtin_expect(!!(x), 0)
#else /* !__GNUC__ or GCC < 2.95 */
  #define likely(x)   (x)
  #define unlikely(x) (x)
#endif /* __GNUC__ */
static CYTHON_INLINE void __Pyx_pretend_to_initialize(void* ptr) { (void)ptr; }

static PyObject *__pyx_m = NULL;
static PyObject *__pyx_d;
static PyObject *__pyx_b;
static PyObject *__pyx_cython_runtime = NULL;
static PyObject *__pyx_empty_tuple;
static PyObject *__pyx_empty_bytes;
static PyObject *__pyx_empty_unicode;
static int __pyx_lineno;
static int __pyx_clineno = 0;
static const char * __pyx_cfilenm= __FILE__;
static const char *__pyx_filename;


static const char *__pyx_f[] = {
  "cython/cwindow.pyx",
  "stringsource",
  "type.pxd",
  "bool.pxd",
  "complex.pxd",
  "cython/htslibWrapper.pxd",
  "cython/fastafile.pxd",
};

/*--- Type declarations ---*/
struct __pyx_obj_13htslibWrapper_Samfile;
struct __pyx_obj_13htslibWrapper_ReadIterator;
struct __pyx_obj_9fastafile_FastaIndex;
struct __pyx_obj_9fastafile_FastaFile;
struct __pyx_obj_7cwindow_ReadArray;
struct __pyx_obj_7cwindow_bamReadBuffer;
struct __pyx_t_13htslibWrapper_cAlignedRead;
typedef struct __pyx_t_13htslibWrapper_cAlignedRead __pyx_t_13htslibWrapper_cAlignedRead;
struct __pyx_opt_args_13htslibWrapper_7Samfile__open;

/* "htslibWrapper.pxd":187
 *     int bam_cigar_oplen(uint32_t c)
 * 
 * ctypedef struct cAlignedRead:             # <<<<<<<<<<<<<<
 *     char* seq
 *     char* qual
 */
struct __pyx_t_13htslibWrapper_cAlignedRead {
  char *seq;
  char *qual;
  short *cigarOps;
  short *hash;
  short mateChromID;
  short cigarLen;
  short chromID;
  short rlen;
  int pos;
  int end;
  int insertSize;
  int matePos;
  int bitFlag;
  unsigned char mapq;
};

/* "htslibWrapper.pxd":211
 *     cdef _hasIndex(self)
 *     cdef void openBAMFile(self, mode)
 *     cpdef _open(self, mode, loadIndex=*)             # <<<<<<<<<<<<<<
 *     cdef char* getrname(self, int tid)
 *     cpdef ReadIterator fetch(self, const char *region)
 */
struct __pyx_opt_args_13htslibWrapper_7Samfile__open {
  int __pyx_n;
  PyObject *loadIndex;
};
struct __pyx_opt_args_7cwindow_bisectReadsLeft;
struct __pyx_opt_args_7cwindow_bisectReadsRight;

/* "cwindow.pyx":276
 * ###################################################################################################
 * 
 * cdef int bisectReadsLeft(cAlignedRead** reads, int testPos, int nReads, int testMatePos=0):             # <<<<<<<<<<<<<<
 *     """
 *     Specialisation of bisection algorithm for array of
 */
struct __pyx_opt_args_7cwindow_bisectReadsLeft {
  int __pyx_n;
  int testMatePos;
};

/* "cwindow.pyx":304
 * ###################################################################################################
 * 
 * cdef int bisectReadsRight(cAlignedRead** reads, int testPos, int nReads, int testMatePos=0):             # <<<<<<<<<<<<<<
 *     """
 *     Specialisation of bisection algorithm for array of
 */
struct __pyx_opt_args_7cwindow_bisectReadsRight {
  int __pyx_n;
  int testMatePos;
};

/* "htslibWrapper.pxd":203
 *     unsigned char mapq
 * 
 * cdef class Samfile:             # <<<<<<<<<<<<<<
 *     cdef void clearHeader(self)
 *     cdef void clearIndex(self)
 */
struct __pyx_obj_13htslibWrapper_Samfile {
  PyObject_HEAD
  struct __pyx_vtabstruct_13htslibWrapper_Samfile *__pyx_vtab;
  char *filename;
  samFile *samfile;
  bam_hdr_t *theHeader;
  hts_idx_t *index;
  PyObject *lock;
};


/* "htslibWrapper.pxd":222
 *     cdef object lock
 * 
 * cdef class ReadIterator:             # <<<<<<<<<<<<<<
 *     cdef cAlignedRead* get(self, int storeRgID, char** rgID)
 *     cdef int cnext(self) nogil
 */
struct __pyx_obj_13htslibWrapper_ReadIterator {
  PyObject_HEAD
  struct __pyx_vtabstruct_13htslibWrapper_ReadIterator *__pyx_vtab;
  samFile *theSamfile;
  hts_itr_t *theIterator;
  bam1_t *b;
};


/* "fastafile.pxd":1
 * cdef class FastaIndex:             # <<<<<<<<<<<<<<
 *     cdef object theFile
 *     cdef dict getRefs(self, int parseNCBI)
 */
struct __pyx_obj_9fastafile_FastaIndex {
  PyObject_HEAD
  struct __pyx_vtabstruct_9fastafile_FastaIndex *__pyx_vtab;
  PyObject *theFile;
};


/* "fastafile.pxd":5
 *     cdef dict getRefs(self, int parseNCBI)
 * 
 * cdef class FastaFile(object):             # <<<<<<<<<<<<<<
 *     cdef object theFile
 *     cdef FastaIndex theIndex
 */
struct __pyx_obj_9fastafile_FastaFile {
  PyObject_HEAD
  struct __pyx_vtabstruct_9fastafile_FastaFile *__pyx_vtab;
  PyObject *theFile;
  struct __pyx_obj_9fastafile_FastaIndex *theIndex;
  PyObject *refs;
  PyObject *cache;
  PyObject *cacheRefName;
  PY_LONG_LONG cacheStartPos;
  PY_LONG_LONG cacheEndPos;
};


/* "cwindow.pxd":13
 * ###################################################################################################
 * 
 * cdef class ReadArray:             # <<<<<<<<<<<<<<
 *     cdef cAlignedRead** array
 *     cdef cAlignedRead** windowStart
 */
struct __pyx_obj_7cwindow_ReadArray {
  PyObject_HEAD
  struct __pyx_vtabstruct_7cwindow_ReadArray *__pyx_vtab;
  __pyx_t_13htslibWrapper_cAlignedRead **array;
  __pyx_t_13htslibWrapper_cAlignedRead **windowStart;
  __pyx_t_13htslibWrapper_cAlignedRead **windowEnd;
  int __pyx___size;
  int __pyx___capacity;
  int __pyx___longestRead;
};


/* "cwindow.pxd":29
 * ###################################################################################################
 * 
 * cdef class bamReadBuffer:             # <<<<<<<<<<<<<<
 *     cdef char* chrom
 *     cdef int chromID
 */
struct __pyx_obj_7cwindow_bamReadBuffer {
  PyObject_HEAD
  struct __pyx_vtabstruct_7cwindow_bamReadBuffer *__pyx_vtab;
  char *chrom;
  int chromID;
  int *filteredReadCountsByType;
  int isSorted;
  int startBase;
  int endBase;
  int windowStartBase;
  int windowEndBase;
  int maxReads;
  int minMapQual;
  int minBaseQual;
  int minFlank;
  int trimReadFlank;
  int verbosity;
  int minGoodBases;
  int trimOverlapping;
  int trimAdapter;
  int trimSoftClipped;
  __pyx_t_13htslibWrapper_cAlignedRead *lastRead;
  PyObject *sample;
  struct __pyx_obj_7cwindow_ReadArray *reads;
  struct __pyx_obj_7cwindow_ReadArray *badReads;
  struct __pyx_obj_7cwindow_ReadArray *brokenMates;
};



/* "htslibWrapper.pxd":203
 *     unsigned char mapq
 * 
 * cdef class Samfile:             # <<<<<<<<<<<<<<
 *     cdef void clearHeader(self)
 *     cdef void clearIndex(self)
 */

struct __pyx_vtabstruct_13htslibWrapper_Samfile {
  void (*clearHeader)(struct __pyx_obj_13htslibWrapper_Samfile *);
  void (*clearIndex)(struct __pyx_obj_13htslibWrapper_Samfile *);
  int (*_isBam)(struct __pyx_obj_13htslibWrapper_Samfile *);
  int (*_isCram)(struct __pyx_obj_13htslibWrapper_Samfile *);
  int (*_isOpen)(struct __pyx_obj_13htslibWrapper_Samfile *);
  PyObject *(*_hasIndex)(struct __pyx_obj_13htslibWrapper_Samfile *);
  void (*openBAMFile)(struct __pyx_obj_13htslibWrapper_Samfile *, PyObject *);
  PyObject *(*_open)(struct __pyx_obj_13htslibWrapper_Samfile *, PyObject *, int __pyx_skip_dispatch, struct __pyx_opt_args_13htslibWrapper_7Samfile__open *__pyx_optional_args);
  char *(*getrname)(struct __pyx_obj_13htslibWrapper_Samfile *, int);
  struct __pyx_obj_13htslibWrapper_ReadIterator *(*fetch)(struct __pyx_obj_13htslibWrapper_Samfile *, char const *, int __pyx_skip_dispatch);
  PyObject *(*close)(struct __pyx_obj_13htslibWrapper_Samfile *, int __pyx_skip_dispatch);
};
static struct __pyx_vtabstruct_13htslibWrapper_Samfile *__pyx_vtabptr_13htslibWrapper_Samfile;


/* "htslibWrapper.pxd":222
 *     cdef object lock
 * 
 * cdef class ReadIterator:             # <<<<<<<<<<<<<<
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/* "fastafile.pxd":1
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/* "fastafile.pxd":5
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/* "cwindow.pyx":109
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/* "cwindow.pyx":485
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struct __pyx_vtabstruct_7cwindow_bamReadBuffer {
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/* Module declarations from 'cpython.pythread' */

/* Module declarations from 'cpython.pystate' */

/* Module declarations from 'cpython.cobject' */

/* Module declarations from 'cpython.oldbuffer' */

/* Module declarations from 'cpython.set' */

/* Module declarations from 'cpython.buffer' */

/* Module declarations from 'cpython.bytes' */

/* Module declarations from 'cpython.pycapsule' */

/* Module declarations from 'cpython' */

/* Module declarations from 'htslibWrapper' */
static PyTypeObject *__pyx_ptype_13htslibWrapper_Samfile = 0;
static PyTypeObject *__pyx_ptype_13htslibWrapper_ReadIterator = 0;
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsReverse(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsPaired(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsProperPair(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsDuplicate(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsUnmapped(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_MateIsUnmapped(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_MateIsReverse(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsQCFail(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsReadOne(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsSecondaryAlignment(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsCompressed(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE void __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static CYTHON_INLINE void __pyx_f_13htslibWrapper_Read_SetCompressed(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static void (*__pyx_f_13htslibWrapper_destroyRead)(__pyx_t_13htslibWrapper_cAlignedRead *); /*proto*/
static void (*__pyx_f_13htslibWrapper_compressRead)(__pyx_t_13htslibWrapper_cAlignedRead *, char *, int, int, int, int); /*proto*/
static void (*__pyx_f_13htslibWrapper_uncompressRead)(__pyx_t_13htslibWrapper_cAlignedRead *, char *, int, int, int); /*proto*/

/* Module declarations from 'fastafile' */
static PyTypeObject *__pyx_ptype_9fastafile_FastaIndex = 0;
static PyTypeObject *__pyx_ptype_9fastafile_FastaFile = 0;

/* Module declarations from 'cwindow' */
static PyTypeObject *__pyx_ptype_7cwindow_ReadArray = 0;
static PyTypeObject *__pyx_ptype_7cwindow_bamReadBuffer = 0;
static int __pyx_v_7cwindow_LOW_QUAL_BASES;
static int __pyx_v_7cwindow_UNMAPPED_READ;
static int __pyx_v_7cwindow_MATE_UNMAPPED;
static int __pyx_v_7cwindow_MATE_DISTANT;
static int __pyx_v_7cwindow_SMALL_INSERT;
static int __pyx_v_7cwindow_DUPLICATE;
static int __pyx_v_7cwindow_LOW_MAP_QUAL;
static CYTHON_INLINE int __pyx_f_7cwindow_readPosComp(void const *, void const *); /*proto*/
static int __pyx_f_7cwindow_readMatePosComp(void const *, void const *); /*proto*/
static int __pyx_f_7cwindow_bisectReadsLeft(__pyx_t_13htslibWrapper_cAlignedRead **, int, int, struct __pyx_opt_args_7cwindow_bisectReadsLeft *__pyx_optional_args); /*proto*/
static int __pyx_f_7cwindow_checkAndTrimRead(__pyx_t_13htslibWrapper_cAlignedRead *, __pyx_t_13htslibWrapper_cAlignedRead *, int, int *, int, int, int, int, int, int, int); /*proto*/
#define __Pyx_MODULE_NAME "cwindow"
extern int __pyx_module_is_main_cwindow;
int __pyx_module_is_main_cwindow = 0;

/* Implementation of 'cwindow' */
static PyObject *__pyx_builtin_StandardError;
static PyObject *__pyx_builtin_TypeError;
static PyObject *__pyx_builtin_range;
static const char __pyx_k_Log[] = "Log";
static const char __pyx_k_end[] = "end";
static const char __pyx_k_info[] = "info";
static const char __pyx_k_main[] = "__main__";
static const char __pyx_k_math[] = "math";
static const char __pyx_k_name[] = "__name__";
static const char __pyx_k_rlen[] = "rlen";
static const char __pyx_k_size[] = "size";
static const char __pyx_k_test[] = "__test__";
static const char __pyx_k_chrom[] = "chrom";
static const char __pyx_k_debug[] = "debug";
static const char __pyx_k_error[] = "error";
static const char __pyx_k_heapq[] = "heapq";
static const char __pyx_k_range[] = "range";
static const char __pyx_k_start[] = "start";
static const char __pyx_k_bisect[] = "bisect";
static const char __pyx_k_import[] = "__import__";
static const char __pyx_k_logger[] = "logger";
static const char __pyx_k_reduce[] = "__reduce__";
static const char __pyx_k_heappop[] = "heappop";
static const char __pyx_k_logging[] = "logging";
static const char __pyx_k_options[] = "options";
static const char __pyx_k_getstate[] = "__getstate__";
static const char __pyx_k_heappush[] = "heappush";
static const char __pyx_k_maxReads[] = "maxReads";
static const char __pyx_k_minFlank[] = "minFlank";
static const char __pyx_k_setstate[] = "__setstate__";
static const char __pyx_k_ReadArray[] = "ReadArray";
static const char __pyx_k_TypeError[] = "TypeError";
static const char __pyx_k_getLogger[] = "getLogger";
static const char __pyx_k_reduce_ex[] = "__reduce_ex__";
static const char __pyx_k_verbosity[] = "verbosity";
static const char __pyx_k_minMapQual[] = "minMapQual";
static const char __pyx_k_pyx_vtable[] = "__pyx_vtable__";
static const char __pyx_k_bisect_left[] = "bisect_left";
static const char __pyx_k_minBaseQual[] = "minBaseQual";
static const char __pyx_k_trimAdapter[] = "trimAdapter";
static const char __pyx_k_StandardError[] = "StandardError";
static const char __pyx_k_bamReadBuffer[] = "bamReadBuffer";
static const char __pyx_k_reduce_cython[] = "__reduce_cython__";
static const char __pyx_k_trimReadFlank[] = "trimReadFlank";
static const char __pyx_k_Found_null_read[] = "Found null read";
static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
static const char __pyx_k_trimOverlapping[] = "trimOverlapping";
static const char __pyx_k_trimSoftClipped[] = "trimSoftClipped";
static const char __pyx_k_filterDuplicates[] = "filterDuplicates";
static const char __pyx_k_minGoodQualBases[] = "minGoodQualBases";
static const char __pyx_k_N_low_qual_reads_s[] = "N low qual reads = %s";
static const char __pyx_k_cline_in_traceback[] = "cline_in_traceback";
static const char __pyx_k_N_duplicate_reads_s[] = "N duplicate reads = %s";
static const char __pyx_k_N_un_mapped_reads_s[] = "N un-mapped reads = %s";
static const char __pyx_k_There_are_s_reads_here[] = "There are %s reads here.";
static const char __pyx_k_Sample_s_has_s_bad_reads[] = "Sample %s has %s bad reads";
static const char __pyx_k_N_low_map_quality_reads_s[] = "N low map quality reads = %s";
static const char __pyx_k_Sample_s_has_s_good_reads[] = "Sample %s has %s good reads";
static const char __pyx_k_Sample_s_has_s_broken_mates[] = "Sample %s has %s broken mates";
static const char __pyx_k_filterReadsWithDistantMates[] = "filterReadsWithDistantMates";
static const char __pyx_k_N_reads_with_distant_mates_s[] = "N reads with distant mates = %s";
static const char __pyx_k_filterReadsWithUnmappedMates[] = "filterReadsWithUnmappedMates";
static const char __pyx_k_N_reads_with_unmapped_mates_s[] = "N reads with unmapped mates = %s";
static const char __pyx_k_Could_not_re_allocate_ReadArray[] = "Could not re-allocate ReadArray";
static const char __pyx_k_Fast_cython_implementation_of_s[] = "\nFast cython implementation of some windowing functions.\n";
static const char __pyx_k_filterReadPairsWithSmallInserts[] = "filterReadPairsWithSmallInserts";
static const char __pyx_k_Could_not_allocate_memory_for_Re[] = "Could not allocate memory for ReadArray";
static const char __pyx_k_N_reads_pairs_with_small_inserts[] = "N reads pairs with small inserts = %s";
static const char __pyx_k_Overhanging_bits_of_reads_poss_a[] = "Overhanging bits of reads (poss. adapter sequences) were clipped";
static const char __pyx_k_Overlapping_segments_of_read_pai[] = "Overlapping segments of read pairs were clipped";
static const char __pyx_k_Start_pos_s_End_pos_s_Read_start[] = "Start pos = %s. End pos = %s. Read start pos = %s. end pos = %s";
static const char __pyx_k_This_should_never_happen_Read_st[] = "This should never happen. Read start pointer > read end pointer!!";
static const char __pyx_k_self_array_self_windowEnd_self_w[] = "self.array,self.windowEnd,self.windowStart cannot be converted to a Python object for pickling";
static const char __pyx_k_self_filteredReadCountsByType_se[] = "self.filteredReadCountsByType,self.lastRead cannot be converted to a Python object for pickling";
static const char __pyx_k_Overhanging_bits_of_reads_poss_a_2[] = "Overhanging bits of reads (poss. adapter sequences) were not clipped";
static const char __pyx_k_Overlapping_segments_of_read_pai_2[] = "Overlapping segments of read pairs were not clipped";
static PyObject *__pyx_kp_s_Could_not_allocate_memory_for_Re;
static PyObject *__pyx_kp_s_Could_not_re_allocate_ReadArray;
static PyObject *__pyx_kp_s_Found_null_read;
static PyObject *__pyx_n_s_Log;
static PyObject *__pyx_kp_s_N_duplicate_reads_s;
static PyObject *__pyx_kp_s_N_low_map_quality_reads_s;
static PyObject *__pyx_kp_s_N_low_qual_reads_s;
static PyObject *__pyx_kp_s_N_reads_pairs_with_small_inserts;
static PyObject *__pyx_kp_s_N_reads_with_distant_mates_s;
static PyObject *__pyx_kp_s_N_reads_with_unmapped_mates_s;
static PyObject *__pyx_kp_s_N_un_mapped_reads_s;
static PyObject *__pyx_kp_s_Overhanging_bits_of_reads_poss_a;
static PyObject *__pyx_kp_s_Overhanging_bits_of_reads_poss_a_2;
static PyObject *__pyx_kp_s_Overlapping_segments_of_read_pai;
static PyObject *__pyx_kp_s_Overlapping_segments_of_read_pai_2;
static PyObject *__pyx_n_s_ReadArray;
static PyObject *__pyx_kp_s_Sample_s_has_s_bad_reads;
static PyObject *__pyx_kp_s_Sample_s_has_s_broken_mates;
static PyObject *__pyx_kp_s_Sample_s_has_s_good_reads;
static PyObject *__pyx_n_s_StandardError;
static PyObject *__pyx_kp_s_Start_pos_s_End_pos_s_Read_start;
static PyObject *__pyx_kp_s_There_are_s_reads_here;
static PyObject *__pyx_kp_s_This_should_never_happen_Read_st;
static PyObject *__pyx_n_s_TypeError;
static PyObject *__pyx_n_s_bamReadBuffer;
static PyObject *__pyx_n_s_bisect;
static PyObject *__pyx_n_s_bisect_left;
static PyObject *__pyx_n_s_chrom;
static PyObject *__pyx_n_s_cline_in_traceback;
static PyObject *__pyx_n_s_debug;
static PyObject *__pyx_n_s_end;
static PyObject *__pyx_n_s_error;
static PyObject *__pyx_n_s_filterDuplicates;
static PyObject *__pyx_n_s_filterReadPairsWithSmallInserts;
static PyObject *__pyx_n_s_filterReadsWithDistantMates;
static PyObject *__pyx_n_s_filterReadsWithUnmappedMates;
static PyObject *__pyx_n_s_getLogger;
static PyObject *__pyx_n_s_getstate;
static PyObject *__pyx_n_s_heappop;
static PyObject *__pyx_n_s_heappush;
static PyObject *__pyx_n_s_heapq;
static PyObject *__pyx_n_s_import;
static PyObject *__pyx_n_s_info;
static PyObject *__pyx_n_s_logger;
static PyObject *__pyx_n_s_logging;
static PyObject *__pyx_n_s_main;
static PyObject *__pyx_n_s_math;
static PyObject *__pyx_n_s_maxReads;
static PyObject *__pyx_n_s_minBaseQual;
static PyObject *__pyx_n_s_minFlank;
static PyObject *__pyx_n_s_minGoodQualBases;
static PyObject *__pyx_n_s_minMapQual;
static PyObject *__pyx_n_s_name;
static PyObject *__pyx_n_s_options;
static PyObject *__pyx_n_s_pyx_vtable;
static PyObject *__pyx_n_s_range;
static PyObject *__pyx_n_s_reduce;
static PyObject *__pyx_n_s_reduce_cython;
static PyObject *__pyx_n_s_reduce_ex;
static PyObject *__pyx_n_s_rlen;
static PyObject *__pyx_kp_s_self_array_self_windowEnd_self_w;
static PyObject *__pyx_kp_s_self_filteredReadCountsByType_se;
static PyObject *__pyx_n_s_setstate;
static PyObject *__pyx_n_s_setstate_cython;
static PyObject *__pyx_n_s_size;
static PyObject *__pyx_n_s_start;
static PyObject *__pyx_n_s_test;
static PyObject *__pyx_n_s_trimAdapter;
static PyObject *__pyx_n_s_trimOverlapping;
static PyObject *__pyx_n_s_trimReadFlank;
static PyObject *__pyx_n_s_trimSoftClipped;
static PyObject *__pyx_n_s_verbosity;
static int __pyx_pf_7cwindow_9ReadArray___init__(struct __pyx_obj_7cwindow_ReadArray *__pyx_v_self, int __pyx_v_size); /* proto */
static void __pyx_pf_7cwindow_9ReadArray_2__dealloc__(struct __pyx_obj_7cwindow_ReadArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_7cwindow_9ReadArray_4__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_7cwindow_ReadArray *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_7cwindow_9ReadArray_6__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_7cwindow_ReadArray *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static int __pyx_pf_7cwindow_13bamReadBuffer___init__(struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self, char *__pyx_v_chrom, int __pyx_v_start, int __pyx_v_end, PyObject *__pyx_v_options); /* proto */
static void __pyx_pf_7cwindow_13bamReadBuffer_2__dealloc__(struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_7cwindow_13bamReadBuffer_4__reduce_cython__(CYTHON_UNUSED struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self); /* proto */
static PyObject *__pyx_pf_7cwindow_13bamReadBuffer_6__setstate_cython__(CYTHON_UNUSED struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v___pyx_state); /* proto */
static PyObject *__pyx_tp_new_7cwindow_ReadArray(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_tp_new_7cwindow_bamReadBuffer(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
static PyObject *__pyx_int_0;
static PyObject *__pyx_tuple_;
static PyObject *__pyx_tuple__2;
static PyObject *__pyx_tuple__3;
static PyObject *__pyx_tuple__4;
static PyObject *__pyx_tuple__5;
/* Late includes */

/* "cwindow.pyx":79
 * 
 * @cython.profile(False)
 * cdef inline int readPosComp(const void* x, const void* y) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Comparison function for use in qsort, to sort reads by their start positions and
 */

static CYTHON_INLINE int __pyx_f_7cwindow_readPosComp(void const *__pyx_v_x, void const *__pyx_v_y) {
  __pyx_t_13htslibWrapper_cAlignedRead **__pyx_v_readOne;
  __pyx_t_13htslibWrapper_cAlignedRead **__pyx_v_readTwo;
  int __pyx_r;

  /* "cwindow.pyx":84
 *     then end positions.
 *     """
 *     cdef cAlignedRead** readOne = <cAlignedRead**>(x)             # <<<<<<<<<<<<<<
 *     cdef cAlignedRead** readTwo = <cAlignedRead**>(y)
 * 
 */
  __pyx_v_readOne = ((__pyx_t_13htslibWrapper_cAlignedRead **)__pyx_v_x);

  /* "cwindow.pyx":85
 *     """
 *     cdef cAlignedRead** readOne = <cAlignedRead**>(x)
 *     cdef cAlignedRead** readTwo = <cAlignedRead**>(y)             # <<<<<<<<<<<<<<
 * 
 *     #if readOne[0].pos != readTwo[0].pos
 */
  __pyx_v_readTwo = ((__pyx_t_13htslibWrapper_cAlignedRead **)__pyx_v_y);

  /* "cwindow.pyx":88
 * 
 *     #if readOne[0].pos != readTwo[0].pos
 *     return readOne[0].pos - readTwo[0].pos             # <<<<<<<<<<<<<<
 *     #else:
 *     #    return readOne[0].end - readTwo[0].end
 */
  __pyx_r = ((__pyx_v_readOne[0])->pos - (__pyx_v_readTwo[0])->pos);
  goto __pyx_L0;

  /* "cwindow.pyx":79
 * 
 * @cython.profile(False)
 * cdef inline int readPosComp(const void* x, const void* y) nogil:             # <<<<<<<<<<<<<<
 *     """
 *     Comparison function for use in qsort, to sort reads by their start positions and
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "cwindow.pyx":95
 * 
 * @cython.profile(False)
 * cdef int readMatePosComp(const void* x, const void* y):             # <<<<<<<<<<<<<<
 *     """
 *     Comparison function for use in qsort, to sort reads by their mate positions, as long as
 */

static int __pyx_f_7cwindow_readMatePosComp(void const *__pyx_v_x, void const *__pyx_v_y) {
  __pyx_t_13htslibWrapper_cAlignedRead **__pyx_v_readOne;
  __pyx_t_13htslibWrapper_cAlignedRead **__pyx_v_readTwo;
  int __pyx_r;
  __Pyx_RefNannyDeclarations
  __Pyx_RefNannySetupContext("readMatePosComp", 0);

  /* "cwindow.pyx":100
 *     the mates are on the same chromosome.
 *     """
 *     cdef cAlignedRead** readOne = <cAlignedRead**>(x)             # <<<<<<<<<<<<<<
 *     cdef cAlignedRead** readTwo = <cAlignedRead**>(y)
 * 
 */
  __pyx_v_readOne = ((__pyx_t_13htslibWrapper_cAlignedRead **)__pyx_v_x);

  /* "cwindow.pyx":101
 *     """
 *     cdef cAlignedRead** readOne = <cAlignedRead**>(x)
 *     cdef cAlignedRead** readTwo = <cAlignedRead**>(y)             # <<<<<<<<<<<<<<
 * 
 *     # Sorting is broken for reads with mates on different chromosomes
 */
  __pyx_v_readTwo = ((__pyx_t_13htslibWrapper_cAlignedRead **)__pyx_v_y);

  /* "cwindow.pyx":104
 * 
 *     # Sorting is broken for reads with mates on different chromosomes
 *     assert readOne[0].mateChromID == readTwo[0].mateChromID             # <<<<<<<<<<<<<<
 *     return  readOne[0].matePos - readTwo[0].matePos
 * 
 */
  #ifndef CYTHON_WITHOUT_ASSERTIONS
  if (unlikely(!Py_OptimizeFlag)) {
    if (unlikely(!(((__pyx_v_readOne[0])->mateChromID == (__pyx_v_readTwo[0])->mateChromID) != 0))) {
      PyErr_SetNone(PyExc_AssertionError);
      __PYX_ERR(0, 104, __pyx_L1_error)
    }
  }
  #endif

  /* "cwindow.pyx":105
 *     # Sorting is broken for reads with mates on different chromosomes
 *     assert readOne[0].mateChromID == readTwo[0].mateChromID
 *     return  readOne[0].matePos - readTwo[0].matePos             # <<<<<<<<<<<<<<
 * 
 * ###################################################################################################
 */
  __pyx_r = ((__pyx_v_readOne[0])->matePos - (__pyx_v_readTwo[0])->matePos);
  goto __pyx_L0;

  /* "cwindow.pyx":95
 * 
 * @cython.profile(False)
 * cdef int readMatePosComp(const void* x, const void* y):             # <<<<<<<<<<<<<<
 *     """
 *     Comparison function for use in qsort, to sort reads by their mate positions, as long as
 */

  /* function exit code */
  __pyx_L1_error:;
  __Pyx_WriteUnraisable("cwindow.readMatePosComp", __pyx_clineno, __pyx_lineno, __pyx_filename, 1, 0);
  __pyx_r = 0;
  __pyx_L0:;
  __Pyx_RefNannyFinishContext();
  return __pyx_r;
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/* "cwindow.pyx":114
 *     checking.
 *     """
 *     def __init__(self, int size):             # <<<<<<<<<<<<<<
 *         """
 *         Allocate an array of size 'size', with initial values
 */

/* Python wrapper */
static int __pyx_pw_7cwindow_9ReadArray_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
static char __pyx_doc_7cwindow_9ReadArray___init__[] = "\n        Allocate an array of size 'size', with initial values\n        'init'.\n        ";
#if CYTHON_COMPILING_IN_CPYTHON
struct wrapperbase __pyx_wrapperbase_7cwindow_9ReadArray___init__;
#endif
static int __pyx_pw_7cwindow_9ReadArray_1__init__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
  int __pyx_v_size;
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      Py_ssize_t kw_args;
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        CYTHON_FALLTHROUGH;
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 *     if theRead.rlen - nQualsBelowMin < minGoodQualBases:             # <<<<<<<<<<<<<<
 *         filteredReadCountsByType[LOW_QUAL_BASES] += 1
 *         Read_SetQCFail(theRead)
 */
  __pyx_t_1 = (((__pyx_v_theRead->rlen - __pyx_v_nQualsBelowMin) < __pyx_v_minGoodQualBases) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":355
 * 
 *     if theRead.rlen - nQualsBelowMin < minGoodQualBases:
 *         filteredReadCountsByType[LOW_QUAL_BASES] += 1             # <<<<<<<<<<<<<<
 *         Read_SetQCFail(theRead)
 *         return False
 */
    __pyx_t_2 = __pyx_v_7cwindow_LOW_QUAL_BASES;
    (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

    /* "cwindow.pyx":356
 *     if theRead.rlen - nQualsBelowMin < minGoodQualBases:
 *         filteredReadCountsByType[LOW_QUAL_BASES] += 1
 *         Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *         return False
 * 
 */
    __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

    /* "cwindow.pyx":357
 *         filteredReadCountsByType[LOW_QUAL_BASES] += 1
 *         Read_SetQCFail(theRead)
 *         return False             # <<<<<<<<<<<<<<
 * 
 *     # Remove unmapped reads
 */
    __pyx_r = 0;
    goto __pyx_L0;

    /* "cwindow.pyx":354
 *             nQualsBelowMin += 1
 * 
 *     if theRead.rlen - nQualsBelowMin < minGoodQualBases:             # <<<<<<<<<<<<<<
 *         filteredReadCountsByType[LOW_QUAL_BASES] += 1
 *         Read_SetQCFail(theRead)
 */
  }

  /* "cwindow.pyx":360
 * 
 *     # Remove unmapped reads
 *     if Read_IsUnmapped(theRead):             # <<<<<<<<<<<<<<
 *         filteredReadCountsByType[UNMAPPED_READ] += 1
 *         Read_SetQCFail(theRead)
 */
  __pyx_t_1 = (__pyx_f_13htslibWrapper_Read_IsUnmapped(__pyx_v_theRead) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":361
 *     # Remove unmapped reads
 *     if Read_IsUnmapped(theRead):
 *         filteredReadCountsByType[UNMAPPED_READ] += 1             # <<<<<<<<<<<<<<
 *         Read_SetQCFail(theRead)
 *         return False
 */
    __pyx_t_2 = __pyx_v_7cwindow_UNMAPPED_READ;
    (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

    /* "cwindow.pyx":362
 *     if Read_IsUnmapped(theRead):
 *         filteredReadCountsByType[UNMAPPED_READ] += 1
 *         Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *         return False
 * 
 */
    __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

    /* "cwindow.pyx":363
 *         filteredReadCountsByType[UNMAPPED_READ] += 1
 *         Read_SetQCFail(theRead)
 *         return False             # <<<<<<<<<<<<<<
 * 
 *     # Remove broken pairs, i.e. pairs where the mate is mapped to a different chromosome or the
 */
    __pyx_r = 0;
    goto __pyx_L0;

    /* "cwindow.pyx":360
 * 
 *     # Remove unmapped reads
 *     if Read_IsUnmapped(theRead):             # <<<<<<<<<<<<<<
 *         filteredReadCountsByType[UNMAPPED_READ] += 1
 *         Read_SetQCFail(theRead)
 */
  }

  /* "cwindow.pyx":367
 *     # Remove broken pairs, i.e. pairs where the mate is mapped to a different chromosome or the
 *     # mate is unmapped
 *     if filteredReadCountsByType[MATE_UNMAPPED] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):
 */
  __pyx_t_1 = (((__pyx_v_filteredReadCountsByType[__pyx_v_7cwindow_MATE_UNMAPPED]) != -1L) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":369
 *     if filteredReadCountsByType[MATE_UNMAPPED] != -1:
 * 
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[MATE_UNMAPPED] += 1
 *             return False
 */
    __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L12_bool_binop_done;
    }
    __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_MateIsUnmapped(__pyx_v_theRead) != 0);
    __pyx_t_1 = __pyx_t_4;
    __pyx_L12_bool_binop_done:;
    if (__pyx_t_1) {

      /* "cwindow.pyx":370
 * 
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):
 *             filteredReadCountsByType[MATE_UNMAPPED] += 1             # <<<<<<<<<<<<<<
 *             return False
 * 
 */
      __pyx_t_2 = __pyx_v_7cwindow_MATE_UNMAPPED;
      (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

      /* "cwindow.pyx":371
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):
 *             filteredReadCountsByType[MATE_UNMAPPED] += 1
 *             return False             # <<<<<<<<<<<<<<
 * 
 *     if filteredReadCountsByType[MATE_DISTANT] != -1:
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "cwindow.pyx":369
 *     if filteredReadCountsByType[MATE_UNMAPPED] != -1:
 * 
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[MATE_UNMAPPED] += 1
 *             return False
 */
    }

    /* "cwindow.pyx":367
 *     # Remove broken pairs, i.e. pairs where the mate is mapped to a different chromosome or the
 *     # mate is unmapped
 *     if filteredReadCountsByType[MATE_UNMAPPED] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and Read_MateIsUnmapped(theRead):
 */
  }

  /* "cwindow.pyx":373
 *             return False
 * 
 *     if filteredReadCountsByType[MATE_DISTANT] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):
 */
  __pyx_t_1 = (((__pyx_v_filteredReadCountsByType[__pyx_v_7cwindow_MATE_DISTANT]) != -1L) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":375
 *     if filteredReadCountsByType[MATE_DISTANT] != -1:
 * 
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[MATE_DISTANT] += 1
 *             return False
 */
    __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L16_bool_binop_done;
    }
    __pyx_t_4 = ((__pyx_v_theRead->chromID != __pyx_v_theRead->mateChromID) != 0);
    if (!__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L16_bool_binop_done;
    }
    __pyx_t_4 = ((!(__pyx_f_13htslibWrapper_Read_IsProperPair(__pyx_v_theRead) != 0)) != 0);
    __pyx_t_1 = __pyx_t_4;
    __pyx_L16_bool_binop_done:;
    if (__pyx_t_1) {

      /* "cwindow.pyx":376
 * 
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):
 *             filteredReadCountsByType[MATE_DISTANT] += 1             # <<<<<<<<<<<<<<
 *             return False
 * 
 */
      __pyx_t_2 = __pyx_v_7cwindow_MATE_DISTANT;
      (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

      /* "cwindow.pyx":377
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):
 *             filteredReadCountsByType[MATE_DISTANT] += 1
 *             return False             # <<<<<<<<<<<<<<
 * 
 *     # If the insert size is < read length, then we almost certainly have adapter contamination, in which case we should
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "cwindow.pyx":375
 *     if filteredReadCountsByType[MATE_DISTANT] != -1:
 * 
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[MATE_DISTANT] += 1
 *             return False
 */
    }

    /* "cwindow.pyx":373
 *             return False
 * 
 *     if filteredReadCountsByType[MATE_DISTANT] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and (theRead.chromID != theRead.mateChromID or (not Read_IsProperPair(theRead))):
 */
  }

  /* "cwindow.pyx":381
 *     # If the insert size is < read length, then we almost certainly have adapter contamination, in which case we should
 *     # skip these reads, as they may be mapped to the wrong location in the genome.
 *     if filteredReadCountsByType[SMALL_INSERT] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):
 */
  __pyx_t_1 = (((__pyx_v_filteredReadCountsByType[__pyx_v_7cwindow_SMALL_INSERT]) != -1L) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":383
 *     if filteredReadCountsByType[SMALL_INSERT] != -1:
 * 
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[SMALL_INSERT] += 1
 *             Read_SetQCFail(theRead)
 */
    __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L21_bool_binop_done;
    }
    __pyx_t_4 = ((__pyx_v_theRead->insertSize != 0) != 0);
    if (__pyx_t_4) {
    } else {
      __pyx_t_1 = __pyx_t_4;
      goto __pyx_L21_bool_binop_done;
    }
    __pyx_t_4 = ((abs(__pyx_v_theRead->insertSize) < __pyx_v_theRead->rlen) != 0);
    __pyx_t_1 = __pyx_t_4;
    __pyx_L21_bool_binop_done:;
    if (__pyx_t_1) {

      /* "cwindow.pyx":384
 * 
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):
 *             filteredReadCountsByType[SMALL_INSERT] += 1             # <<<<<<<<<<<<<<
 *             Read_SetQCFail(theRead)
 *             return False
 */
      __pyx_t_2 = __pyx_v_7cwindow_SMALL_INSERT;
      (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

      /* "cwindow.pyx":385
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):
 *             filteredReadCountsByType[SMALL_INSERT] += 1
 *             Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *             return False
 * 
 */
      __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

      /* "cwindow.pyx":386
 *             filteredReadCountsByType[SMALL_INSERT] += 1
 *             Read_SetQCFail(theRead)
 *             return False             # <<<<<<<<<<<<<<
 * 
 *     # Check if this read is actually a duplicate. TODO: store library tag and check.
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "cwindow.pyx":383
 *     if filteredReadCountsByType[SMALL_INSERT] != -1:
 * 
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[SMALL_INSERT] += 1
 *             Read_SetQCFail(theRead)
 */
    }

    /* "cwindow.pyx":381
 *     # If the insert size is < read length, then we almost certainly have adapter contamination, in which case we should
 *     # skip these reads, as they may be mapped to the wrong location in the genome.
 *     if filteredReadCountsByType[SMALL_INSERT] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsPaired(theRead) and (theRead.insertSize != 0 and abs(theRead.insertSize) < theRead.rlen):
 */
  }

  /* "cwindow.pyx":389
 * 
 *     # Check if this read is actually a duplicate. TODO: store library tag and check.
 *     if filteredReadCountsByType[DUPLICATE] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsDuplicate(theRead):
 */
  __pyx_t_1 = (((__pyx_v_filteredReadCountsByType[__pyx_v_7cwindow_DUPLICATE]) != -1L) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":391
 *     if filteredReadCountsByType[DUPLICATE] != -1:
 * 
 *         if Read_IsDuplicate(theRead):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[DUPLICATE] += 1
 *             Read_SetQCFail(theRead)
 */
    __pyx_t_1 = (__pyx_f_13htslibWrapper_Read_IsDuplicate(__pyx_v_theRead) != 0);
    if (__pyx_t_1) {

      /* "cwindow.pyx":392
 * 
 *         if Read_IsDuplicate(theRead):
 *             filteredReadCountsByType[DUPLICATE] += 1             # <<<<<<<<<<<<<<
 *             Read_SetQCFail(theRead)
 *             return False
 */
      __pyx_t_2 = __pyx_v_7cwindow_DUPLICATE;
      (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

      /* "cwindow.pyx":393
 *         if Read_IsDuplicate(theRead):
 *             filteredReadCountsByType[DUPLICATE] += 1
 *             Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *             return False
 *         elif theLastRead != NULL:
 */
      __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

      /* "cwindow.pyx":394
 *             filteredReadCountsByType[DUPLICATE] += 1
 *             Read_SetQCFail(theRead)
 *             return False             # <<<<<<<<<<<<<<
 *         elif theLastRead != NULL:
 *             if theRead.pos == theLastRead.pos and theRead.rlen == theLastRead.rlen:
 */
      __pyx_r = 0;
      goto __pyx_L0;

      /* "cwindow.pyx":391
 *     if filteredReadCountsByType[DUPLICATE] != -1:
 * 
 *         if Read_IsDuplicate(theRead):             # <<<<<<<<<<<<<<
 *             filteredReadCountsByType[DUPLICATE] += 1
 *             Read_SetQCFail(theRead)
 */
    }

    /* "cwindow.pyx":395
 *             Read_SetQCFail(theRead)
 *             return False
 *         elif theLastRead != NULL:             # <<<<<<<<<<<<<<
 *             if theRead.pos == theLastRead.pos and theRead.rlen == theLastRead.rlen:
 * 
 */
    __pyx_t_1 = ((__pyx_v_theLastRead != NULL) != 0);
    if (__pyx_t_1) {

      /* "cwindow.pyx":396
 *             return False
 *         elif theLastRead != NULL:
 *             if theRead.pos == theLastRead.pos and theRead.rlen == theLastRead.rlen:             # <<<<<<<<<<<<<<
 * 
 *                 # For paired reads, check mate's position
 */
      __pyx_t_4 = ((__pyx_v_theRead->pos == __pyx_v_theLastRead->pos) != 0);
      if (__pyx_t_4) {
      } else {
        __pyx_t_1 = __pyx_t_4;
        goto __pyx_L27_bool_binop_done;
      }
      __pyx_t_4 = ((__pyx_v_theRead->rlen == __pyx_v_theLastRead->rlen) != 0);
      __pyx_t_1 = __pyx_t_4;
      __pyx_L27_bool_binop_done:;
      if (__pyx_t_1) {

        /* "cwindow.pyx":399
 * 
 *                 # For paired reads, check mate's position
 *                 if Read_IsPaired(theRead):             # <<<<<<<<<<<<<<
 * 
 *                     if theLastRead.matePos == theRead.matePos:
 */
        __pyx_t_1 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
        if (__pyx_t_1) {

          /* "cwindow.pyx":401
 *                 if Read_IsPaired(theRead):
 * 
 *                     if theLastRead.matePos == theRead.matePos:             # <<<<<<<<<<<<<<
 *                         filteredReadCountsByType[DUPLICATE] += 1
 *                         Read_SetQCFail(theRead)
 */
          __pyx_t_1 = ((__pyx_v_theLastRead->matePos == __pyx_v_theRead->matePos) != 0);
          if (__pyx_t_1) {

            /* "cwindow.pyx":402
 * 
 *                     if theLastRead.matePos == theRead.matePos:
 *                         filteredReadCountsByType[DUPLICATE] += 1             # <<<<<<<<<<<<<<
 *                         Read_SetQCFail(theRead)
 *                         return False
 */
            __pyx_t_2 = __pyx_v_7cwindow_DUPLICATE;
            (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

            /* "cwindow.pyx":403
 *                     if theLastRead.matePos == theRead.matePos:
 *                         filteredReadCountsByType[DUPLICATE] += 1
 *                         Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *                         return False
 * 
 */
            __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

            /* "cwindow.pyx":404
 *                         filteredReadCountsByType[DUPLICATE] += 1
 *                         Read_SetQCFail(theRead)
 *                         return False             # <<<<<<<<<<<<<<
 * 
 *                 # For single reads, just check pos and length of reads
 */
            __pyx_r = 0;
            goto __pyx_L0;

            /* "cwindow.pyx":401
 *                 if Read_IsPaired(theRead):
 * 
 *                     if theLastRead.matePos == theRead.matePos:             # <<<<<<<<<<<<<<
 *                         filteredReadCountsByType[DUPLICATE] += 1
 *                         Read_SetQCFail(theRead)
 */
          }

          /* "cwindow.pyx":399
 * 
 *                 # For paired reads, check mate's position
 *                 if Read_IsPaired(theRead):             # <<<<<<<<<<<<<<
 * 
 *                     if theLastRead.matePos == theRead.matePos:
 */
          goto __pyx_L29;
        }

        /* "cwindow.pyx":408
 *                 # For single reads, just check pos and length of reads
 *                 else:
 *                     filteredReadCountsByType[DUPLICATE] += 1             # <<<<<<<<<<<<<<
 *                     Read_SetQCFail(theRead)
 *                     return False
 */
        /*else*/ {
          __pyx_t_2 = __pyx_v_7cwindow_DUPLICATE;
          (__pyx_v_filteredReadCountsByType[__pyx_t_2]) = ((__pyx_v_filteredReadCountsByType[__pyx_t_2]) + 1);

          /* "cwindow.pyx":409
 *                 else:
 *                     filteredReadCountsByType[DUPLICATE] += 1
 *                     Read_SetQCFail(theRead)             # <<<<<<<<<<<<<<
 *                     return False
 * 
 */
          __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_v_theRead);

          /* "cwindow.pyx":410
 *                     filteredReadCountsByType[DUPLICATE] += 1
 *                     Read_SetQCFail(theRead)
 *                     return False             # <<<<<<<<<<<<<<
 * 
 *     ## Any read that gets passed here will be used, but low quality tails will be trimmed, and
 */
          __pyx_r = 0;
          goto __pyx_L0;
        }
        __pyx_L29:;

        /* "cwindow.pyx":396
 *             return False
 *         elif theLastRead != NULL:
 *             if theRead.pos == theLastRead.pos and theRead.rlen == theLastRead.rlen:             # <<<<<<<<<<<<<<
 * 
 *                 # For paired reads, check mate's position
 */
      }

      /* "cwindow.pyx":395
 *             Read_SetQCFail(theRead)
 *             return False
 *         elif theLastRead != NULL:             # <<<<<<<<<<<<<<
 *             if theRead.pos == theLastRead.pos and theRead.rlen == theLastRead.rlen:
 * 
 */
    }

    /* "cwindow.pyx":389
 * 
 *     # Check if this read is actually a duplicate. TODO: store library tag and check.
 *     if filteredReadCountsByType[DUPLICATE] != -1:             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsDuplicate(theRead):
 */
  }

  /* "cwindow.pyx":416
 * 
 *     # Trim low-quality tails for forward reads
 *     if not Read_IsReverse(theRead):             # <<<<<<<<<<<<<<
 * 
 *         for index from 1 <= index <= theRead.rlen:
 */
  __pyx_t_1 = ((!(__pyx_f_13htslibWrapper_Read_IsReverse(__pyx_v_theRead) != 0)) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":418
 *     if not Read_IsReverse(theRead):
 * 
 *         for index from 1 <= index <= theRead.rlen:             # <<<<<<<<<<<<<<
 *             if index < trimReadFlank or theRead.qual[theRead.rlen - index] < 5:
 *                 theRead.qual[theRead.rlen - index] = 0
 */
    __pyx_t_3 = __pyx_v_theRead->rlen;
    for (__pyx_v_index = 1; __pyx_v_index <= __pyx_t_3; __pyx_v_index++) {

      /* "cwindow.pyx":419
 * 
 *         for index from 1 <= index <= theRead.rlen:
 *             if index < trimReadFlank or theRead.qual[theRead.rlen - index] < 5:             # <<<<<<<<<<<<<<
 *                 theRead.qual[theRead.rlen - index] = 0
 *             else:
 */
      __pyx_t_4 = ((__pyx_v_index < __pyx_v_trimReadFlank) != 0);
      if (!__pyx_t_4) {
      } else {
        __pyx_t_1 = __pyx_t_4;
        goto __pyx_L35_bool_binop_done;
      }
      __pyx_t_4 = (((__pyx_v_theRead->qual[(__pyx_v_theRead->rlen - __pyx_v_index)]) < 5) != 0);
      __pyx_t_1 = __pyx_t_4;
      __pyx_L35_bool_binop_done:;
      if (__pyx_t_1) {

        /* "cwindow.pyx":420
 *         for index from 1 <= index <= theRead.rlen:
 *             if index < trimReadFlank or theRead.qual[theRead.rlen - index] < 5:
 *                 theRead.qual[theRead.rlen - index] = 0             # <<<<<<<<<<<<<<
 *             else:
 *                 break
 */
        (__pyx_v_theRead->qual[(__pyx_v_theRead->rlen - __pyx_v_index)]) = 0;

        /* "cwindow.pyx":419
 * 
 *         for index from 1 <= index <= theRead.rlen:
 *             if index < trimReadFlank or theRead.qual[theRead.rlen - index] < 5:             # <<<<<<<<<<<<<<
 *                 theRead.qual[theRead.rlen - index] = 0
 *             else:
 */
        goto __pyx_L34;
      }

      /* "cwindow.pyx":422
 *                 theRead.qual[theRead.rlen - index] = 0
 *             else:
 *                 break             # <<<<<<<<<<<<<<
 *     # Trim low-quality tails for reverse reads
 *     else:
 */
      /*else*/ {
        goto __pyx_L33_break;
      }
      __pyx_L34:;
    }
    __pyx_L33_break:;

    /* "cwindow.pyx":416
 * 
 *     # Trim low-quality tails for forward reads
 *     if not Read_IsReverse(theRead):             # <<<<<<<<<<<<<<
 * 
 *         for index from 1 <= index <= theRead.rlen:
 */
    goto __pyx_L31;
  }

  /* "cwindow.pyx":425
 *     # Trim low-quality tails for reverse reads
 *     else:
 *         for index from 0 <= index < theRead.rlen:             # <<<<<<<<<<<<<<
 * 
 *             if index < trimReadFlank or theRead.qual[index] < 5:
 */
  /*else*/ {
    __pyx_t_3 = __pyx_v_theRead->rlen;
    for (__pyx_v_index = 0; __pyx_v_index < __pyx_t_3; __pyx_v_index++) {

      /* "cwindow.pyx":427
 *         for index from 0 <= index < theRead.rlen:
 * 
 *             if index < trimReadFlank or theRead.qual[index] < 5:             # <<<<<<<<<<<<<<
 *                 theRead.qual[index] = 0
 *             else:
 */
      __pyx_t_4 = ((__pyx_v_index < __pyx_v_trimReadFlank) != 0);
      if (!__pyx_t_4) {
      } else {
        __pyx_t_1 = __pyx_t_4;
        goto __pyx_L40_bool_binop_done;
      }
      __pyx_t_4 = (((__pyx_v_theRead->qual[__pyx_v_index]) < 5) != 0);
      __pyx_t_1 = __pyx_t_4;
      __pyx_L40_bool_binop_done:;
      if (__pyx_t_1) {

        /* "cwindow.pyx":428
 * 
 *             if index < trimReadFlank or theRead.qual[index] < 5:
 *                 theRead.qual[index] = 0             # <<<<<<<<<<<<<<
 *             else:
 *                 break
 */
        (__pyx_v_theRead->qual[__pyx_v_index]) = 0;

        /* "cwindow.pyx":427
 *         for index from 0 <= index < theRead.rlen:
 * 
 *             if index < trimReadFlank or theRead.qual[index] < 5:             # <<<<<<<<<<<<<<
 *                 theRead.qual[index] = 0
 *             else:
 */
        goto __pyx_L39;
      }

      /* "cwindow.pyx":430
 *                 theRead.qual[index] = 0
 *             else:
 *                 break             # <<<<<<<<<<<<<<
 * 
 *     cdef int absIns = abs(theRead.insertSize)
 */
      /*else*/ {
        goto __pyx_L38_break;
      }
      __pyx_L39:;
    }
    __pyx_L38_break:;
  }
  __pyx_L31:;

  /* "cwindow.pyx":432
 *                 break
 * 
 *     cdef int absIns = abs(theRead.insertSize)             # <<<<<<<<<<<<<<
 * 
 *     # Trim overlapping part of forward read, in pairs where the read length is greater than the insert size
 */
  __pyx_v_absIns = abs(__pyx_v_theRead->insertSize);

  /* "cwindow.pyx":438
 *     # remove duplicate information, which gives systematic errors when pcr errors have occured in library prep.
 * 
 *     if trimOverlapping == 1 and (Read_IsPaired(theRead) and absIns > 0 and (not Read_IsReverse(theRead)) and Read_MateIsReverse(theRead) and absIns < 2*theRead.rlen):             # <<<<<<<<<<<<<<
 *         for index from 1 <= index <= min(theRead.rlen, (2*theRead.rlen - theRead.insertSize) + 1):
 *             theRead.qual[theRead.rlen - index] = 0
 */
  __pyx_t_4 = ((__pyx_v_trimOverlapping == 1) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L43_bool_binop_done;
  }
  __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L43_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_absIns > 0) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L43_bool_binop_done;
  }
  __pyx_t_4 = ((!(__pyx_f_13htslibWrapper_Read_IsReverse(__pyx_v_theRead) != 0)) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L43_bool_binop_done;
  }
  __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_MateIsReverse(__pyx_v_theRead) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L43_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_absIns < (2 * __pyx_v_theRead->rlen)) != 0);
  __pyx_t_1 = __pyx_t_4;
  __pyx_L43_bool_binop_done:;
  if (__pyx_t_1) {

    /* "cwindow.pyx":439
 * 
 *     if trimOverlapping == 1 and (Read_IsPaired(theRead) and absIns > 0 and (not Read_IsReverse(theRead)) and Read_MateIsReverse(theRead) and absIns < 2*theRead.rlen):
 *         for index from 1 <= index <= min(theRead.rlen, (2*theRead.rlen - theRead.insertSize) + 1):             # <<<<<<<<<<<<<<
 *             theRead.qual[theRead.rlen - index] = 0
 * 
 */
    __pyx_t_5 = (((2 * __pyx_v_theRead->rlen) - __pyx_v_theRead->insertSize) + 1);
    __pyx_t_3 = __pyx_v_theRead->rlen;
    if (((__pyx_t_5 < __pyx_t_3) != 0)) {
      __pyx_t_6 = __pyx_t_5;
    } else {
      __pyx_t_6 = __pyx_t_3;
    }
    __pyx_t_5 = __pyx_t_6;
    for (__pyx_v_index = 1; __pyx_v_index <= __pyx_t_5; __pyx_v_index++) {

      /* "cwindow.pyx":440
 *     if trimOverlapping == 1 and (Read_IsPaired(theRead) and absIns > 0 and (not Read_IsReverse(theRead)) and Read_MateIsReverse(theRead) and absIns < 2*theRead.rlen):
 *         for index from 1 <= index <= min(theRead.rlen, (2*theRead.rlen - theRead.insertSize) + 1):
 *             theRead.qual[theRead.rlen - index] = 0             # <<<<<<<<<<<<<<
 * 
 *     # Trim the end of any read where the insert size is < read length. If these have not been
 */
      (__pyx_v_theRead->qual[(__pyx_v_theRead->rlen - __pyx_v_index)]) = 0;
    }

    /* "cwindow.pyx":438
 *     # remove duplicate information, which gives systematic errors when pcr errors have occured in library prep.
 * 
 *     if trimOverlapping == 1 and (Read_IsPaired(theRead) and absIns > 0 and (not Read_IsReverse(theRead)) and Read_MateIsReverse(theRead) and absIns < 2*theRead.rlen):             # <<<<<<<<<<<<<<
 *         for index from 1 <= index <= min(theRead.rlen, (2*theRead.rlen - theRead.insertSize) + 1):
 *             theRead.qual[theRead.rlen - index] = 0
 */
  }

  /* "cwindow.pyx":445
 *     # already filtered out then they need trimming, as adapter contamination will cause a
 *     # high FP rate otherwise.
 *     if trimAdapter == 1 and (Read_IsPaired(theRead) and absIns > 0 and absIns < theRead.rlen):             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsReverse(theRead):
 */
  __pyx_t_4 = ((__pyx_v_trimAdapter == 1) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L52_bool_binop_done;
  }
  __pyx_t_4 = (__pyx_f_13htslibWrapper_Read_IsPaired(__pyx_v_theRead) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L52_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_absIns > 0) != 0);
  if (__pyx_t_4) {
  } else {
    __pyx_t_1 = __pyx_t_4;
    goto __pyx_L52_bool_binop_done;
  }
  __pyx_t_4 = ((__pyx_v_absIns < __pyx_v_theRead->rlen) != 0);
  __pyx_t_1 = __pyx_t_4;
  __pyx_L52_bool_binop_done:;
  if (__pyx_t_1) {

    /* "cwindow.pyx":447
 *     if trimAdapter == 1 and (Read_IsPaired(theRead) and absIns > 0 and absIns < theRead.rlen):
 * 
 *         if Read_IsReverse(theRead):             # <<<<<<<<<<<<<<
 *             for index from 1 <= index < theRead.rlen - absIns + 1:
 *                 theRead.qual[theRead.rlen - index] = 0
 */
    __pyx_t_1 = (__pyx_f_13htslibWrapper_Read_IsReverse(__pyx_v_theRead) != 0);
    if (__pyx_t_1) {

      /* "cwindow.pyx":448
 * 
 *         if Read_IsReverse(theRead):
 *             for index from 1 <= index < theRead.rlen - absIns + 1:             # <<<<<<<<<<<<<<
 *                 theRead.qual[theRead.rlen - index] = 0
 *         else:
 */
      __pyx_t_5 = ((__pyx_v_theRead->rlen - __pyx_v_absIns) + 1);
      for (__pyx_v_index = 1; __pyx_v_index < __pyx_t_5; __pyx_v_index++) {

        /* "cwindow.pyx":449
 *         if Read_IsReverse(theRead):
 *             for index from 1 <= index < theRead.rlen - absIns + 1:
 *                 theRead.qual[theRead.rlen - index] = 0             # <<<<<<<<<<<<<<
 *         else:
 *             for index from absIns <= index < theRead.rlen:
 */
        (__pyx_v_theRead->qual[(__pyx_v_theRead->rlen - __pyx_v_index)]) = 0;
      }

      /* "cwindow.pyx":447
 *     if trimAdapter == 1 and (Read_IsPaired(theRead) and absIns > 0 and absIns < theRead.rlen):
 * 
 *         if Read_IsReverse(theRead):             # <<<<<<<<<<<<<<
 *             for index from 1 <= index < theRead.rlen - absIns + 1:
 *                 theRead.qual[theRead.rlen - index] = 0
 */
      goto __pyx_L56;
    }

    /* "cwindow.pyx":451
 *                 theRead.qual[theRead.rlen - index] = 0
 *         else:
 *             for index from absIns <= index < theRead.rlen:             # <<<<<<<<<<<<<<
 *                 theRead.qual[index] = 0
 * 
 */
    /*else*/ {
      __pyx_t_3 = __pyx_v_theRead->rlen;
      for (__pyx_v_index = __pyx_v_absIns; __pyx_v_index < __pyx_t_3; __pyx_v_index++) {

        /* "cwindow.pyx":452
 *         else:
 *             for index from absIns <= index < theRead.rlen:
 *                 theRead.qual[index] = 0             # <<<<<<<<<<<<<<
 * 
 * 
 */
        (__pyx_v_theRead->qual[__pyx_v_index]) = 0;
      }
    }
    __pyx_L56:;

    /* "cwindow.pyx":445
 *     # already filtered out then they need trimming, as adapter contamination will cause a
 *     # high FP rate otherwise.
 *     if trimAdapter == 1 and (Read_IsPaired(theRead) and absIns > 0 and absIns < theRead.rlen):             # <<<<<<<<<<<<<<
 * 
 *         if Read_IsReverse(theRead):
 */
  }

  /* "cwindow.pyx":457
 *     # Check for soft-clipping (present in BWA reads, for example, but not Stampy). Soft-clipped
 *     # sequences should be set to QUAL = 0, as they may include contamination by adapters etc.
 *     cdef int cigarIndex = 0             # <<<<<<<<<<<<<<
 *     cdef int j = 0
 *     cdef int cigarOp = -1
 */
  __pyx_v_cigarIndex = 0;

  /* "cwindow.pyx":458
 *     # sequences should be set to QUAL = 0, as they may include contamination by adapters etc.
 *     cdef int cigarIndex = 0
 *     cdef int j = 0             # <<<<<<<<<<<<<<
 *     cdef int cigarOp = -1
 *     cdef int cigarLen = -1
 */
  __pyx_v_j = 0;

  /* "cwindow.pyx":459
 *     cdef int cigarIndex = 0
 *     cdef int j = 0
 *     cdef int cigarOp = -1             # <<<<<<<<<<<<<<
 *     cdef int cigarLen = -1
 * 
 */
  __pyx_v_cigarOp = -1;

  /* "cwindow.pyx":460
 *     cdef int j = 0
 *     cdef int cigarOp = -1
 *     cdef int cigarLen = -1             # <<<<<<<<<<<<<<
 * 
 *     if trimSoftClipped == 1:
 */
  __pyx_v_cigarLen = -1;

  /* "cwindow.pyx":462
 *     cdef int cigarLen = -1
 * 
 *     if trimSoftClipped == 1:             # <<<<<<<<<<<<<<
 *         index = 0
 * 
 */
  __pyx_t_1 = ((__pyx_v_trimSoftClipped == 1) != 0);
  if (__pyx_t_1) {

    /* "cwindow.pyx":463
 * 
 *     if trimSoftClipped == 1:
 *         index = 0             # <<<<<<<<<<<<<<
 * 
 *         for cigarIndex in range(theRead.cigarLen):
 */
    __pyx_v_index = 0;

    /* "cwindow.pyx":465
 *         index = 0
 * 
 *         for cigarIndex in range(theRead.cigarLen):             # <<<<<<<<<<<<<<
 * 
 *             cigarOp = theRead.cigarOps[2*cigarIndex]
 */
    __pyx_t_3 = __pyx_v_theRead->cigarLen;
    __pyx_t_7 = __pyx_t_3;
    for (__pyx_t_2 = 0; __pyx_t_2 < __pyx_t_7; __pyx_t_2+=1) {
      __pyx_v_cigarIndex = __pyx_t_2;

      /* "cwindow.pyx":467
 *         for cigarIndex in range(theRead.cigarLen):
 * 
 *             cigarOp = theRead.cigarOps[2*cigarIndex]             # <<<<<<<<<<<<<<
 *             cigarLen = theRead.cigarOps[2*cigarIndex + 1]
 * 
 */
      __pyx_v_cigarOp = (__pyx_v_theRead->cigarOps[(2 * __pyx_v_cigarIndex)]);

      /* "cwindow.pyx":468
 * 
 *             cigarOp = theRead.cigarOps[2*cigarIndex]
 *             cigarLen = theRead.cigarOps[2*cigarIndex + 1]             # <<<<<<<<<<<<<<
 * 
 *             # Skip good sequence. 0 is match. 1 is insertion.
 */
      __pyx_v_cigarLen = (__pyx_v_theRead->cigarOps[((2 * __pyx_v_cigarIndex) + 1)]);

      /* "cwindow.pyx":471
 * 
 *             # Skip good sequence. 0 is match. 1 is insertion.
 *             if cigarOp == 0 or cigarOp == 1:             # <<<<<<<<<<<<<<
 *                 index += theRead.cigarOps[2*cigarIndex + 1]
 * 
 */
      switch (__pyx_v_cigarOp) {
        case 0:
        case 1:

        /* "cwindow.pyx":472
 *             # Skip good sequence. 0 is match. 1 is insertion.
 *             if cigarOp == 0 or cigarOp == 1:
 *                 index += theRead.cigarOps[2*cigarIndex + 1]             # <<<<<<<<<<<<<<
 * 
 *             # 4 is soft-clipping
 */
        __pyx_v_index = (__pyx_v_index + (__pyx_v_theRead->cigarOps[((2 * __pyx_v_cigarIndex) + 1)]));

        /* "cwindow.pyx":471
 * 
 *             # Skip good sequence. 0 is match. 1 is insertion.
 *             if cigarOp == 0 or cigarOp == 1:             # <<<<<<<<<<<<<<
 *                 index += theRead.cigarOps[2*cigarIndex + 1]
 * 
 */
        break;
        case 4:

        /* "cwindow.pyx":477
 *             elif cigarOp == 4:
 *                 # Set quals to zero across all sequence flagged as soft-clipped
 *                 for j in range(theRead.cigarOps[2*cigarIndex + 1]):             # <<<<<<<<<<<<<<
 *                     theRead.qual[index] = 0
 *                     index += 1
 */
        __pyx_t_8 = (__pyx_v_theRead->cigarOps[((2 * __pyx_v_cigarIndex) + 1)]);
        __pyx_t_9 = __pyx_t_8;
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          __pyx_v_j = __pyx_t_10;

          /* "cwindow.pyx":478
 *                 # Set quals to zero across all sequence flagged as soft-clipped
 *                 for j in range(theRead.cigarOps[2*cigarIndex + 1]):
 *                     theRead.qual[index] = 0             # <<<<<<<<<<<<<<
 *                     index += 1
 * 
 */
          (__pyx_v_theRead->qual[__pyx_v_index]) = 0;

          /* "cwindow.pyx":479
 *                 for j in range(theRead.cigarOps[2*cigarIndex + 1]):
 *                     theRead.qual[index] = 0
 *                     index += 1             # <<<<<<<<<<<<<<
 * 
 *     return True
 */
          __pyx_v_index = (__pyx_v_index + 1);
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        /* "cwindow.pyx":475
 * 
 *             # 4 is soft-clipping
 *             elif cigarOp == 4:             # <<<<<<<<<<<<<<
 *                 # Set quals to zero across all sequence flagged as soft-clipped
 *                 for j in range(theRead.cigarOps[2*cigarIndex + 1]):
 */
        break;
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    /* "cwindow.pyx":462
 *     cdef int cigarLen = -1
 * 
 *     if trimSoftClipped == 1:             # <<<<<<<<<<<<<<
 *         index = 0
 * 
 */
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  /* "cwindow.pyx":481
 *                     index += 1
 * 
 *     return True             # <<<<<<<<<<<<<<
 * 
 * ###################################################################################################
 */
  __pyx_r = 1;
  goto __pyx_L0;

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 * 
 * cdef int checkAndTrimRead(cAlignedRead* theRead, cAlignedRead* theLastRead, int minGoodQualBases, int* filteredReadCountsByType, int minMapQual, int minBaseQual, int minFlank, int trimOverlapping, int trimAdapter, int trimReadFlank, int trimSoftClipped):             # <<<<<<<<<<<<<<
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 */

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  /* "cwindow.pyx":633
 *         cdef cAlignedRead** end = self.reads.windowEnd
 *         cdef cAlignedRead** bStart = self.badReads.windowStart
 *         cdef cAlignedRead** bEnd = self.badReads.windowEnd             # <<<<<<<<<<<<<<
 * 
 *         cdef int nImproper = 0
 */
  __pyx_t_1 = __pyx_v_self->badReads->windowEnd;
  __pyx_v_bEnd = __pyx_t_1;

  /* "cwindow.pyx":635
 *         cdef cAlignedRead** bEnd = self.badReads.windowEnd
 * 
 *         cdef int nImproper = 0             # <<<<<<<<<<<<<<
 * 
 *         while start != end:
 */
  __pyx_v_nImproper = 0;

  /* "cwindow.pyx":637
 *         cdef int nImproper = 0
 * 
 *         while start != end:             # <<<<<<<<<<<<<<
 *             if not Read_IsProperPair(start[0]):
 *                 nImproper += 1
 */
  while (1) {
    __pyx_t_2 = ((__pyx_v_start != __pyx_v_end) != 0);
    if (!__pyx_t_2) break;

    /* "cwindow.pyx":638
 * 
 *         while start != end:
 *             if not Read_IsProperPair(start[0]):             # <<<<<<<<<<<<<<
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 *             start += 1
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    __pyx_t_2 = ((!(__pyx_f_13htslibWrapper_Read_IsProperPair((__pyx_v_start[0])) != 0)) != 0);
    if (__pyx_t_2) {

      /* "cwindow.pyx":639
 *         while start != end:
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 *                 nImproper += 1             # <<<<<<<<<<<<<<
 *             start += 1
 * 
 */
      __pyx_v_nImproper = (__pyx_v_nImproper + 1);

      /* "cwindow.pyx":638
 * 
 *         while start != end:
 *             if not Read_IsProperPair(start[0]):             # <<<<<<<<<<<<<<
 *                 nImproper += 1
 *             start += 1
 */
    }

    /* "cwindow.pyx":640
 *             if not Read_IsProperPair(start[0]):
 *                 nImproper += 1
 *             start += 1             # <<<<<<<<<<<<<<
 * 
 *         while bStart != bEnd:
 */
    __pyx_v_start = (__pyx_v_start + 1);
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  /* "cwindow.pyx":642
 *             start += 1
 * 
 *         while bStart != bEnd:             # <<<<<<<<<<<<<<
 *             if not Read_IsProperPair(bStart[0]):
 *                 nImproper += 1
 */
  while (1) {
    __pyx_t_2 = ((__pyx_v_bStart != __pyx_v_bEnd) != 0);
    if (!__pyx_t_2) break;

    /* "cwindow.pyx":643
 * 
 *         while bStart != bEnd:
 *             if not Read_IsProperPair(bStart[0]):             # <<<<<<<<<<<<<<
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 *             bStart += 1
 */
    __pyx_t_2 = ((!(__pyx_f_13htslibWrapper_Read_IsProperPair((__pyx_v_bStart[0])) != 0)) != 0);
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      /* "cwindow.pyx":644
 *         while bStart != bEnd:
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 *                 nImproper += 1             # <<<<<<<<<<<<<<
 *             bStart += 1
 * 
 */
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      /* "cwindow.pyx":643
 * 
 *         while bStart != bEnd:
 *             if not Read_IsProperPair(bStart[0]):             # <<<<<<<<<<<<<<
 *                 nImproper += 1
 *             bStart += 1
 */
    }

    /* "cwindow.pyx":645
 *             if not Read_IsProperPair(bStart[0]):
 *                 nImproper += 1
 *             bStart += 1             # <<<<<<<<<<<<<<
 * 
 *         return nImproper
 */
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  /* "cwindow.pyx":647
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 *         return nImproper             # <<<<<<<<<<<<<<
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 *     cdef int countReadsCoveringRegion(self, int start, int end):
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 * 
 *     cdef int countImproperPairs(self):             # <<<<<<<<<<<<<<
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/* "cwindow.pyx":649
 *         return nImproper
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 *     cdef int countReadsCoveringRegion(self, int start, int end):             # <<<<<<<<<<<<<<
 *         """
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static int __pyx_f_7cwindow_13bamReadBuffer_countReadsCoveringRegion(struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self, int __pyx_v_start, int __pyx_v_end) {
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  /* "cwindow.pyx":653
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 * 
 *     cdef void setWindowPointers(self, int start, int end, int refStart, int refEnd, char* refSeq, int qualBinSize):
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  goto __pyx_L0;

  /* "cwindow.pyx":649
 *         return nImproper
 * 
 *     cdef int countReadsCoveringRegion(self, int start, int end):             # <<<<<<<<<<<<<<
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  /* function exit code */
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/* "cwindow.pyx":655
 *         return self.reads.countReadsCoveringRegion(start, end)
 * 
 *     cdef void setWindowPointers(self, int start, int end, int refStart, int refEnd, char* refSeq, int qualBinSize):             # <<<<<<<<<<<<<<
 *         """
 *         Set the windowStart and windowEnd pointers to point to the first
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static void __pyx_f_7cwindow_13bamReadBuffer_setWindowPointers(struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self, int __pyx_v_start, int __pyx_v_end, int __pyx_v_refStart, int __pyx_v_refEnd, char *__pyx_v_refSeq, int __pyx_v_qualBinSize) {
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  __pyx_t_13htslibWrapper_cAlignedRead **__pyx_v_theEnd;
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  int __pyx_t_3;
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 *         self.reads.setWindowPointers(start, end)             # <<<<<<<<<<<<<<
 *         self.badReads.setWindowPointers(start, end)
 *         self.brokenMates.setWindowPointersBasedOnMatePos(start, end)
 */
  ((struct __pyx_vtabstruct_7cwindow_ReadArray *)__pyx_v_self->reads->__pyx_vtab)->setWindowPointers(__pyx_v_self->reads, __pyx_v_start, __pyx_v_end);

  /* "cwindow.pyx":661
 *         """
 *         self.reads.setWindowPointers(start, end)
 *         self.badReads.setWindowPointers(start, end)             # <<<<<<<<<<<<<<
 *         self.brokenMates.setWindowPointersBasedOnMatePos(start, end)
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 */
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  /* "cwindow.pyx":662
 *         self.reads.setWindowPointers(start, end)
 *         self.badReads.setWindowPointers(start, end)
 *         self.brokenMates.setWindowPointersBasedOnMatePos(start, end)             # <<<<<<<<<<<<<<
 * 
 *         cdef cAlignedRead** theStart = NULL
 */
  ((struct __pyx_vtabstruct_7cwindow_ReadArray *)__pyx_v_self->brokenMates->__pyx_vtab)->setWindowPointersBasedOnMatePos(__pyx_v_self->brokenMates, __pyx_v_start, __pyx_v_end);

  /* "cwindow.pyx":664
 *         self.brokenMates.setWindowPointersBasedOnMatePos(start, end)
 * 
 *         cdef cAlignedRead** theStart = NULL             # <<<<<<<<<<<<<<
 *         cdef cAlignedRead** theEnd = NULL
 * 
 */
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  /* "cwindow.pyx":665
 * 
 *         cdef cAlignedRead** theStart = NULL
 *         cdef cAlignedRead** theEnd = NULL             # <<<<<<<<<<<<<<
 * 
 *         # If the reads in this window are compressed, then uncompress them
 */
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  /* "cwindow.pyx":668
 * 
 *         # If the reads in this window are compressed, then uncompress them
 *         theStart = self.reads.windowStart             # <<<<<<<<<<<<<<
 *         theEnd = self.reads.windowEnd
 * 
 */
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  __pyx_v_theStart = __pyx_t_1;

  /* "cwindow.pyx":669
 *         # If the reads in this window are compressed, then uncompress them
 *         theStart = self.reads.windowStart
 *         theEnd = self.reads.windowEnd             # <<<<<<<<<<<<<<
 * 
 *         if theStart != theEnd and Read_IsCompressed(theStart[0]):
 */
  __pyx_t_1 = __pyx_v_self->reads->windowEnd;
  __pyx_v_theEnd = __pyx_t_1;

  /* "cwindow.pyx":671
 *         theEnd = self.reads.windowEnd
 * 
 *         if theStart != theEnd and Read_IsCompressed(theStart[0]):             # <<<<<<<<<<<<<<
 * 
 *             while theStart != theEnd:
 */
  __pyx_t_3 = ((__pyx_v_theStart != __pyx_v_theEnd) != 0);
  if (__pyx_t_3) {
  } else {
    __pyx_t_2 = __pyx_t_3;
    goto __pyx_L4_bool_binop_done;
  }
  __pyx_t_3 = (__pyx_f_13htslibWrapper_Read_IsCompressed((__pyx_v_theStart[0])) != 0);
  __pyx_t_2 = __pyx_t_3;
  __pyx_L4_bool_binop_done:;
  if (__pyx_t_2) {

    /* "cwindow.pyx":673
 *         if theStart != theEnd and Read_IsCompressed(theStart[0]):
 * 
 *             while theStart != theEnd:             # <<<<<<<<<<<<<<
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)
 *                 theStart += 1
 */
    while (1) {
      __pyx_t_2 = ((__pyx_v_theStart != __pyx_v_theEnd) != 0);
      if (!__pyx_t_2) break;

      /* "cwindow.pyx":674
 * 
 *             while theStart != theEnd:
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)             # <<<<<<<<<<<<<<
 *                 theStart += 1
 * 
 */
      __pyx_f_13htslibWrapper_uncompressRead((__pyx_v_theStart[0]), __pyx_v_refSeq, __pyx_v_refStart, __pyx_v_refEnd, __pyx_v_qualBinSize);

      /* "cwindow.pyx":675
 *             while theStart != theEnd:
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)
 *                 theStart += 1             # <<<<<<<<<<<<<<
 * 
 *             theStart = self.badReads.windowStart
 */
      __pyx_v_theStart = (__pyx_v_theStart + 1);
    }

    /* "cwindow.pyx":677
 *                 theStart += 1
 * 
 *             theStart = self.badReads.windowStart             # <<<<<<<<<<<<<<
 *             theEnd = self.badReads.windowEnd
 * 
 */
    __pyx_t_1 = __pyx_v_self->badReads->windowStart;
    __pyx_v_theStart = __pyx_t_1;

    /* "cwindow.pyx":678
 * 
 *             theStart = self.badReads.windowStart
 *             theEnd = self.badReads.windowEnd             # <<<<<<<<<<<<<<
 * 
 *             while theStart != theEnd:
 */
    __pyx_t_1 = __pyx_v_self->badReads->windowEnd;
    __pyx_v_theEnd = __pyx_t_1;

    /* "cwindow.pyx":680
 *             theEnd = self.badReads.windowEnd
 * 
 *             while theStart != theEnd:             # <<<<<<<<<<<<<<
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)
 *                 theStart += 1
 */
    while (1) {
      __pyx_t_2 = ((__pyx_v_theStart != __pyx_v_theEnd) != 0);
      if (!__pyx_t_2) break;

      /* "cwindow.pyx":681
 * 
 *             while theStart != theEnd:
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)             # <<<<<<<<<<<<<<
 *                 theStart += 1
 * 
 */
      __pyx_f_13htslibWrapper_uncompressRead((__pyx_v_theStart[0]), __pyx_v_refSeq, __pyx_v_refStart, __pyx_v_refEnd, __pyx_v_qualBinSize);

      /* "cwindow.pyx":682
 *             while theStart != theEnd:
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)
 *                 theStart += 1             # <<<<<<<<<<<<<<
 * 
 *             theStart = self.brokenMates.windowStart
 */
      __pyx_v_theStart = (__pyx_v_theStart + 1);
    }

    /* "cwindow.pyx":684
 *                 theStart += 1
 * 
 *             theStart = self.brokenMates.windowStart             # <<<<<<<<<<<<<<
 *             theEnd = self.brokenMates.windowEnd
 * 
 */
    __pyx_t_1 = __pyx_v_self->brokenMates->windowStart;
    __pyx_v_theStart = __pyx_t_1;

    /* "cwindow.pyx":685
 * 
 *             theStart = self.brokenMates.windowStart
 *             theEnd = self.brokenMates.windowEnd             # <<<<<<<<<<<<<<
 * 
 *             while theStart != theEnd:
 */
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    __pyx_v_theEnd = __pyx_t_1;

    /* "cwindow.pyx":687
 *             theEnd = self.brokenMates.windowEnd
 * 
 *             while theStart != theEnd:             # <<<<<<<<<<<<<<
 *                 uncompressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize)
 *                 theStart += 1
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      /* "cwindow.pyx":688
 * 
 *             while theStart != theEnd:
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 *                 theStart += 1
 * 
 */
      __pyx_f_13htslibWrapper_uncompressRead((__pyx_v_theStart[0]), __pyx_v_refSeq, __pyx_v_refStart, __pyx_v_refEnd, __pyx_v_qualBinSize);

      /* "cwindow.pyx":689
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 *         theEnd = self.reads.windowEnd
 * 
 *         if theStart != theEnd and Read_IsCompressed(theStart[0]):             # <<<<<<<<<<<<<<
 * 
 *             while theStart != theEnd:
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  /* "cwindow.pyx":655
 *         return self.reads.countReadsCoveringRegion(start, end)
 * 
 *     cdef void setWindowPointers(self, int start, int end, int refStart, int refEnd, char* refSeq, int qualBinSize):             # <<<<<<<<<<<<<<
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/* "cwindow.pyx":691
 *                 theStart += 1
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 *     cdef void recompressReadsInCurrentWindow(self, int refStart, int refEnd, char* refSeq, int qualBinSize, int compressReads):             # <<<<<<<<<<<<<<
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static void __pyx_f_7cwindow_13bamReadBuffer_recompressReadsInCurrentWindow(struct __pyx_obj_7cwindow_bamReadBuffer *__pyx_v_self, int __pyx_v_refStart, int __pyx_v_refEnd, char *__pyx_v_refSeq, int __pyx_v_qualBinSize, int __pyx_v_compressReads) {
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  __Pyx_RefNannyDeclarations
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 *         cdef cAlignedRead** theEnd = NULL
 * 
 */
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  /* "cwindow.pyx":697
 *         """
 *         cdef cAlignedRead** theStart = NULL
 *         cdef cAlignedRead** theEnd = NULL             # <<<<<<<<<<<<<<
 * 
 *         # If the reads in this window are compressed, then uncompress them
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  /* "cwindow.pyx":700
 * 
 *         # If the reads in this window are compressed, then uncompress them
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 *         theEnd = self.reads.windowEnd
 * 
 */
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 *         # If the reads in this window are compressed, then uncompress them
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 *         theEnd = self.reads.windowEnd             # <<<<<<<<<<<<<<
 * 
 *         while theStart != theEnd:
 */
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 * 
 *         while theStart != theEnd:             # <<<<<<<<<<<<<<
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 *             # Compresss reads is required
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 *             # Compresss reads is required
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 * 
 */
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 *             # Compresss reads is required
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 * 
 *             # Otherwise, just clear the hash
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 * 
 *             # Compresss reads is required
 *             if compressReads:             # <<<<<<<<<<<<<<
 *                 compressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize, 1)
 * 
 */
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 *             # Otherwise, just clear the hash
 *             if theStart[0].hash != NULL:             # <<<<<<<<<<<<<<
 *                 free(theStart[0].hash)
 *                 theStart[0].hash = NULL
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      /* "cwindow.pyx":711
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 *                 theStart[0].hash = NULL
 * 
 */
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      /* "cwindow.pyx":712
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 *                 free(theStart[0].hash)
 *                 theStart[0].hash = NULL             # <<<<<<<<<<<<<<
 * 
 *             theStart += 1
 */
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      /* "cwindow.pyx":710
 * 
 *             # Otherwise, just clear the hash
 *             if theStart[0].hash != NULL:             # <<<<<<<<<<<<<<
 *                 free(theStart[0].hash)
 *                 theStart[0].hash = NULL
 */
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    /* "cwindow.pyx":714
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 * 
 *             theStart += 1             # <<<<<<<<<<<<<<
 * 
 *         theStart = self.badReads.windowStart
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  /* "cwindow.pyx":716
 *             theStart += 1
 * 
 *         theStart = self.badReads.windowStart             # <<<<<<<<<<<<<<
 *         theEnd = self.badReads.windowEnd
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 */
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  /* "cwindow.pyx":717
 * 
 *         theStart = self.badReads.windowStart
 *         theEnd = self.badReads.windowEnd             # <<<<<<<<<<<<<<
 * 
 *         while theStart != theEnd:
 */
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  /* "cwindow.pyx":719
 *         theEnd = self.badReads.windowEnd
 * 
 *         while theStart != theEnd:             # <<<<<<<<<<<<<<
 * 
 *             # Compresss reads is required
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    /* "cwindow.pyx":722
 * 
 *             # Compresss reads is required
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 */
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      /* "cwindow.pyx":723
 *             # Compresss reads is required
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 * 
 *             # Otherwise, just clear the hash
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      /* "cwindow.pyx":722
 * 
 *             # Compresss reads is required
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 *                 compressRead(theStart[0], refSeq, refStart, refEnd, qualBinSize, 1)
 * 
 */
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    /* "cwindow.pyx":726
 * 
 *             # Otherwise, just clear the hash
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      /* "cwindow.pyx":727
 *             # Otherwise, just clear the hash
 *             if theStart[0].hash != NULL:
 *                 free(theStart[0].hash)             # <<<<<<<<<<<<<<
 *                 theStart[0].hash = NULL
 * 
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 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 8) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":265
 *     return ( (theRead.bitFlag & BAM_FUNMAP) != 0)
 * 
 * cdef inline int Read_MateIsUnmapped(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FMUNMAP) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":268
 *     return ( (theRead.bitFlag & BAM_FMUNMAP) != 0)
 * 
 * cdef inline int Read_MateIsReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FMREVERSE) != 0)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_MateIsReverse(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":269
 * 
 * cdef inline int Read_MateIsReverse(cAlignedRead* theRead) nogil:
 *     return ( (theRead.bitFlag & BAM_FMREVERSE) != 0)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_IsQCFail(cAlignedRead* theRead) nogil:
 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 32) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":268
 *     return ( (theRead.bitFlag & BAM_FMUNMAP) != 0)
 * 
 * cdef inline int Read_MateIsReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FMREVERSE) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":271
 *     return ( (theRead.bitFlag & BAM_FMREVERSE) != 0)
 * 
 * cdef inline int Read_IsQCFail(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FQCFAIL) != 0)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsQCFail(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":272
 * 
 * cdef inline int Read_IsQCFail(cAlignedRead* theRead) nogil:
 *     return ( (theRead.bitFlag & BAM_FQCFAIL) != 0)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_IsReadOne(cAlignedRead* theRead) nogil:
 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 0x200) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":271
 *     return ( (theRead.bitFlag & BAM_FMREVERSE) != 0)
 * 
 * cdef inline int Read_IsQCFail(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FQCFAIL) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":274
 *     return ( (theRead.bitFlag & BAM_FQCFAIL) != 0)
 * 
 * cdef inline int Read_IsReadOne(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FREAD1) != 0)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsReadOne(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":275
 * 
 * cdef inline int Read_IsReadOne(cAlignedRead* theRead) nogil:
 *     return ( (theRead.bitFlag & BAM_FREAD1) != 0)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_IsSecondaryAlignment(cAlignedRead* theRead) nogil:
 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 64) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":274
 *     return ( (theRead.bitFlag & BAM_FQCFAIL) != 0)
 * 
 * cdef inline int Read_IsReadOne(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FREAD1) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":277
 *     return ( (theRead.bitFlag & BAM_FREAD1) != 0)
 * 
 * cdef inline int Read_IsSecondaryAlignment(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FSECONDARY) != 0)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsSecondaryAlignment(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":278
 * 
 * cdef inline int Read_IsSecondaryAlignment(cAlignedRead* theRead) nogil:
 *     return ( (theRead.bitFlag & BAM_FSECONDARY) != 0)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_IsCompressed(cAlignedRead* theRead) nogil:
 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 0x100) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":277
 *     return ( (theRead.bitFlag & BAM_FREAD1) != 0)
 * 
 * cdef inline int Read_IsSecondaryAlignment(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FSECONDARY) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":280
 *     return ( (theRead.bitFlag & BAM_FSECONDARY) != 0)
 * 
 * cdef inline int Read_IsCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FCOMPRESSED) != 0)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_IsCompressed(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":281
 * 
 * cdef inline int Read_IsCompressed(cAlignedRead* theRead) nogil:
 *     return ( (theRead.bitFlag & BAM_FCOMPRESSED) != 0)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_SetIsNotReverse(cAlignedRead* theRead) nogil:
 */
  __pyx_r = ((__pyx_v_theRead->bitFlag & 0x800) != 0);
  goto __pyx_L0;

  /* "htslibWrapper.pxd":280
 *     return ( (theRead.bitFlag & BAM_FSECONDARY) != 0)
 * 
 * cdef inline int Read_IsCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     return ( (theRead.bitFlag & BAM_FCOMPRESSED) != 0)
 * 
 */

  /* function exit code */
  __pyx_L0:;
  return __pyx_r;
}

/* "htslibWrapper.pxd":283
 *     return ( (theRead.bitFlag & BAM_FCOMPRESSED) != 0)
 * 
 * cdef inline int Read_SetIsNotReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag &= (~BAM_FREVERSE)
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_SetIsNotReverse(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":284
 * 
 * cdef inline int Read_SetIsNotReverse(cAlignedRead* theRead) nogil:
 *     theRead.bitFlag &= (~BAM_FREVERSE)             # <<<<<<<<<<<<<<
 * 
 * cdef inline int Read_SetIsReverse(cAlignedRead* theRead) nogil:
 */
  __pyx_v_theRead->bitFlag = (__pyx_v_theRead->bitFlag & (~16));

  /* "htslibWrapper.pxd":283
 *     return ( (theRead.bitFlag & BAM_FCOMPRESSED) != 0)
 * 
 * cdef inline int Read_SetIsNotReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag &= (~BAM_FREVERSE)
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  return __pyx_r;
}

/* "htslibWrapper.pxd":286
 *     theRead.bitFlag &= (~BAM_FREVERSE)
 * 
 * cdef inline int Read_SetIsReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FREVERSE
 * 
 */

static CYTHON_INLINE int __pyx_f_13htslibWrapper_Read_SetIsReverse(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {
  int __pyx_r;

  /* "htslibWrapper.pxd":287
 * 
 * cdef inline int Read_SetIsReverse(cAlignedRead* theRead) nogil:
 *     theRead.bitFlag |= BAM_FREVERSE             # <<<<<<<<<<<<<<
 * 
 * cdef inline void Read_SetQCFail(cAlignedRead* theRead) nogil:
 */
  __pyx_v_theRead->bitFlag = (__pyx_v_theRead->bitFlag | 16);

  /* "htslibWrapper.pxd":286
 *     theRead.bitFlag &= (~BAM_FREVERSE)
 * 
 * cdef inline int Read_SetIsReverse(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FREVERSE
 * 
 */

  /* function exit code */
  __pyx_r = 0;
  return __pyx_r;
}

/* "htslibWrapper.pxd":289
 *     theRead.bitFlag |= BAM_FREVERSE
 * 
 * cdef inline void Read_SetQCFail(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FQCFAIL
 * 
 */

static CYTHON_INLINE void __pyx_f_13htslibWrapper_Read_SetQCFail(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {

  /* "htslibWrapper.pxd":290
 * 
 * cdef inline void Read_SetQCFail(cAlignedRead* theRead) nogil:
 *     theRead.bitFlag |= BAM_FQCFAIL             # <<<<<<<<<<<<<<
 * 
 * cdef inline void Read_SetCompressed(cAlignedRead* theRead) nogil:
 */
  __pyx_v_theRead->bitFlag = (__pyx_v_theRead->bitFlag | 0x200);

  /* "htslibWrapper.pxd":289
 *     theRead.bitFlag |= BAM_FREVERSE
 * 
 * cdef inline void Read_SetQCFail(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FQCFAIL
 * 
 */

  /* function exit code */
}

/* "htslibWrapper.pxd":292
 *     theRead.bitFlag |= BAM_FQCFAIL
 * 
 * cdef inline void Read_SetCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FCOMPRESSED
 * 
 */

static CYTHON_INLINE void __pyx_f_13htslibWrapper_Read_SetCompressed(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {

  /* "htslibWrapper.pxd":293
 * 
 * cdef inline void Read_SetCompressed(cAlignedRead* theRead) nogil:
 *     theRead.bitFlag |= BAM_FCOMPRESSED             # <<<<<<<<<<<<<<
 * 
 * cdef inline void Read_SetUnCompressed(cAlignedRead* theRead) nogil:
 */
  __pyx_v_theRead->bitFlag = (__pyx_v_theRead->bitFlag | 0x800);

  /* "htslibWrapper.pxd":292
 *     theRead.bitFlag |= BAM_FQCFAIL
 * 
 * cdef inline void Read_SetCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag |= BAM_FCOMPRESSED
 * 
 */

  /* function exit code */
}

/* "htslibWrapper.pxd":295
 *     theRead.bitFlag |= BAM_FCOMPRESSED
 * 
 * cdef inline void Read_SetUnCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag &= (~BAM_FCOMPRESSED)
 * 
 */

static CYTHON_INLINE void __pyx_f_13htslibWrapper_Read_SetUnCompressed(__pyx_t_13htslibWrapper_cAlignedRead *__pyx_v_theRead) {

  /* "htslibWrapper.pxd":296
 * 
 * cdef inline void Read_SetUnCompressed(cAlignedRead* theRead) nogil:
 *     theRead.bitFlag &= (~BAM_FCOMPRESSED)             # <<<<<<<<<<<<<<
 * 
 * 
 */
  __pyx_v_theRead->bitFlag = (__pyx_v_theRead->bitFlag & (~0x800));

  /* "htslibWrapper.pxd":295
 *     theRead.bitFlag |= BAM_FCOMPRESSED
 * 
 * cdef inline void Read_SetUnCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag &= (~BAM_FCOMPRESSED)
 * 
 */

  /* function exit code */
}
static struct __pyx_vtabstruct_7cwindow_ReadArray __pyx_vtable_7cwindow_ReadArray;

static PyObject *__pyx_tp_new_7cwindow_ReadArray(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_7cwindow_ReadArray *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_7cwindow_ReadArray *)o);
  p->__pyx_vtab = __pyx_vtabptr_7cwindow_ReadArray;
  return o;
}

static void __pyx_tp_dealloc_7cwindow_ReadArray(PyObject *o) {
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && (!PyType_IS_GC(Py_TYPE(o)) || !_PyGC_FINALIZED(o))) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    ++Py_REFCNT(o);
    __pyx_pw_7cwindow_9ReadArray_3__dealloc__(o);
    --Py_REFCNT(o);
    PyErr_Restore(etype, eval, etb);
  }
  (*Py_TYPE(o)->tp_free)(o);
}

static PyMethodDef __pyx_methods_7cwindow_ReadArray[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_7cwindow_9ReadArray_5__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_7cwindow_9ReadArray_7__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type_7cwindow_ReadArray = {
  PyVarObject_HEAD_INIT(0, 0)
  "cwindow.ReadArray", /*tp_name*/
  sizeof(struct __pyx_obj_7cwindow_ReadArray), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_7cwindow_ReadArray, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE, /*tp_flags*/
  "\n    Simple structure to wrap a raw C array, with some bounds\n    checking.\n    ", /*tp_doc*/
  0, /*tp_traverse*/
  0, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_7cwindow_ReadArray, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_7cwindow_9ReadArray_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_7cwindow_ReadArray, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};
static struct __pyx_vtabstruct_7cwindow_bamReadBuffer __pyx_vtable_7cwindow_bamReadBuffer;

static PyObject *__pyx_tp_new_7cwindow_bamReadBuffer(PyTypeObject *t, CYTHON_UNUSED PyObject *a, CYTHON_UNUSED PyObject *k) {
  struct __pyx_obj_7cwindow_bamReadBuffer *p;
  PyObject *o;
  if (likely((t->tp_flags & Py_TPFLAGS_IS_ABSTRACT) == 0)) {
    o = (*t->tp_alloc)(t, 0);
  } else {
    o = (PyObject *) PyBaseObject_Type.tp_new(t, __pyx_empty_tuple, 0);
  }
  if (unlikely(!o)) return 0;
  p = ((struct __pyx_obj_7cwindow_bamReadBuffer *)o);
  p->__pyx_vtab = __pyx_vtabptr_7cwindow_bamReadBuffer;
  p->sample = ((PyObject*)Py_None); Py_INCREF(Py_None);
  p->reads = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  p->badReads = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  p->brokenMates = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  return o;
}

static void __pyx_tp_dealloc_7cwindow_bamReadBuffer(PyObject *o) {
  struct __pyx_obj_7cwindow_bamReadBuffer *p = (struct __pyx_obj_7cwindow_bamReadBuffer *)o;
  #if CYTHON_USE_TP_FINALIZE
  if (unlikely(PyType_HasFeature(Py_TYPE(o), Py_TPFLAGS_HAVE_FINALIZE) && Py_TYPE(o)->tp_finalize) && !_PyGC_FINALIZED(o)) {
    if (PyObject_CallFinalizerFromDealloc(o)) return;
  }
  #endif
  PyObject_GC_UnTrack(o);
  {
    PyObject *etype, *eval, *etb;
    PyErr_Fetch(&etype, &eval, &etb);
    ++Py_REFCNT(o);
    __pyx_pw_7cwindow_13bamReadBuffer_3__dealloc__(o);
    --Py_REFCNT(o);
    PyErr_Restore(etype, eval, etb);
  }
  Py_CLEAR(p->sample);
  Py_CLEAR(p->reads);
  Py_CLEAR(p->badReads);
  Py_CLEAR(p->brokenMates);
  (*Py_TYPE(o)->tp_free)(o);
}

static int __pyx_tp_traverse_7cwindow_bamReadBuffer(PyObject *o, visitproc v, void *a) {
  int e;
  struct __pyx_obj_7cwindow_bamReadBuffer *p = (struct __pyx_obj_7cwindow_bamReadBuffer *)o;
  if (p->reads) {
    e = (*v)(((PyObject *)p->reads), a); if (e) return e;
  }
  if (p->badReads) {
    e = (*v)(((PyObject *)p->badReads), a); if (e) return e;
  }
  if (p->brokenMates) {
    e = (*v)(((PyObject *)p->brokenMates), a); if (e) return e;
  }
  return 0;
}

static int __pyx_tp_clear_7cwindow_bamReadBuffer(PyObject *o) {
  PyObject* tmp;
  struct __pyx_obj_7cwindow_bamReadBuffer *p = (struct __pyx_obj_7cwindow_bamReadBuffer *)o;
  tmp = ((PyObject*)p->reads);
  p->reads = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->badReads);
  p->badReads = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  tmp = ((PyObject*)p->brokenMates);
  p->brokenMates = ((struct __pyx_obj_7cwindow_ReadArray *)Py_None); Py_INCREF(Py_None);
  Py_XDECREF(tmp);
  return 0;
}

static PyMethodDef __pyx_methods_7cwindow_bamReadBuffer[] = {
  {"__reduce_cython__", (PyCFunction)__pyx_pw_7cwindow_13bamReadBuffer_5__reduce_cython__, METH_NOARGS, 0},
  {"__setstate_cython__", (PyCFunction)__pyx_pw_7cwindow_13bamReadBuffer_7__setstate_cython__, METH_O, 0},
  {0, 0, 0, 0}
};

static PyTypeObject __pyx_type_7cwindow_bamReadBuffer = {
  PyVarObject_HEAD_INIT(0, 0)
  "cwindow.bamReadBuffer", /*tp_name*/
  sizeof(struct __pyx_obj_7cwindow_bamReadBuffer), /*tp_basicsize*/
  0, /*tp_itemsize*/
  __pyx_tp_dealloc_7cwindow_bamReadBuffer, /*tp_dealloc*/
  0, /*tp_print*/
  0, /*tp_getattr*/
  0, /*tp_setattr*/
  #if PY_MAJOR_VERSION < 3
  0, /*tp_compare*/
  #endif
  #if PY_MAJOR_VERSION >= 3
  0, /*tp_as_async*/
  #endif
  0, /*tp_repr*/
  0, /*tp_as_number*/
  0, /*tp_as_sequence*/
  0, /*tp_as_mapping*/
  0, /*tp_hash*/
  0, /*tp_call*/
  0, /*tp_str*/
  0, /*tp_getattro*/
  0, /*tp_setattro*/
  0, /*tp_as_buffer*/
  Py_TPFLAGS_DEFAULT|Py_TPFLAGS_HAVE_VERSION_TAG|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_HAVE_NEWBUFFER|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_GC, /*tp_flags*/
  "\n    Utility class for bufffering reads from a single BAM file, so we only make a single pass\n    through the data in each BAM in the loop through windows.\n    ", /*tp_doc*/
  __pyx_tp_traverse_7cwindow_bamReadBuffer, /*tp_traverse*/
  __pyx_tp_clear_7cwindow_bamReadBuffer, /*tp_clear*/
  0, /*tp_richcompare*/
  0, /*tp_weaklistoffset*/
  0, /*tp_iter*/
  0, /*tp_iternext*/
  __pyx_methods_7cwindow_bamReadBuffer, /*tp_methods*/
  0, /*tp_members*/
  0, /*tp_getset*/
  0, /*tp_base*/
  0, /*tp_dict*/
  0, /*tp_descr_get*/
  0, /*tp_descr_set*/
  0, /*tp_dictoffset*/
  __pyx_pw_7cwindow_13bamReadBuffer_1__init__, /*tp_init*/
  0, /*tp_alloc*/
  __pyx_tp_new_7cwindow_bamReadBuffer, /*tp_new*/
  0, /*tp_free*/
  0, /*tp_is_gc*/
  0, /*tp_bases*/
  0, /*tp_mro*/
  0, /*tp_cache*/
  0, /*tp_subclasses*/
  0, /*tp_weaklist*/
  0, /*tp_del*/
  0, /*tp_version_tag*/
  #if PY_VERSION_HEX >= 0x030400a1
  0, /*tp_finalize*/
  #endif
};

static PyMethodDef __pyx_methods[] = {
  {0, 0, 0, 0}
};

#if PY_MAJOR_VERSION >= 3
#if CYTHON_PEP489_MULTI_PHASE_INIT
static PyObject* __pyx_pymod_create(PyObject *spec, PyModuleDef *def); /*proto*/
static int __pyx_pymod_exec_cwindow(PyObject* module); /*proto*/
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 */
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  /* "htslibWrapper.pxd":295
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 * cdef inline void Read_SetUnCompressed(cAlignedRead* theRead) nogil:             # <<<<<<<<<<<<<<
 *     theRead.bitFlag &= (~BAM_FCOMPRESSED)
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 */

  /*--- Wrapped vars code ---*/

  goto __pyx_L0;
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static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
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/* PyObjectGetAttrStr */
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static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
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#if PY_MAJOR_VERSION < 3
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    return PyObject_GetAttr(obj, attr_name);
}
#endif

/* GetBuiltinName */
static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
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        PyErr_Format(PyExc_NameError,
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#else
            "name '%.200s' is not defined", PyString_AS_STRING(name));
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/* PyErrFetchRestore */
#if CYTHON_FAST_THREAD_STATE
static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
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static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
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}
#endif

/* WriteUnraisableException */
static void __Pyx_WriteUnraisable(const char *name, CYTHON_UNUSED int clineno,
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    PyObject *old_exc, *old_val, *old_tb;
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#ifdef WITH_THREAD
    PyGILState_STATE state;
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#ifdef _MSC_VER
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    __Pyx_PyThreadState_assign
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        __Pyx_ErrRestore(old_exc, old_val, old_tb);
        PyErr_PrintEx(1);
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    #if PY_MAJOR_VERSION < 3
    ctx = PyString_FromString(name);
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    ctx = PyUnicode_FromString(name);
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    __Pyx_ErrRestore(old_exc, old_val, old_tb);
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        PyErr_WriteUnraisable(Py_None);
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        PyErr_WriteUnraisable(ctx);
        Py_DECREF(ctx);
    }
#ifdef WITH_THREAD
    if (nogil)
        PyGILState_Release(state);
#endif
}

/* RaiseDoubleKeywords */
static void __Pyx_RaiseDoubleKeywordsError(
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    PyObject* kw_name)
{
    PyErr_Format(PyExc_TypeError,
        #if PY_MAJOR_VERSION >= 3
        "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
        #else
        "%s() got multiple values for keyword argument '%s'", func_name,
        PyString_AsString(kw_name));
        #endif
}

/* ParseKeywords */
static int __Pyx_ParseOptionalKeywords(
    PyObject *kwds,
    PyObject **argnames[],
    PyObject *kwds2,
    PyObject *values[],
    Py_ssize_t num_pos_args,
    const char* function_name)
{
    PyObject *key = 0, *value = 0;
    Py_ssize_t pos = 0;
    PyObject*** name;
    PyObject*** first_kw_arg = argnames + num_pos_args;
    while (PyDict_Next(kwds, &pos, &key, &value)) {
        name = first_kw_arg;
        while (*name && (**name != key)) name++;
        if (*name) {
            values[name-argnames] = value;
            continue;
        }
        name = first_kw_arg;
        #if PY_MAJOR_VERSION < 3
        if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
            while (*name) {
                if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
                        && _PyString_Eq(**name, key)) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    if ((**argname == key) || (
                            (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
                             && _PyString_Eq(**argname, key))) {
                        goto arg_passed_twice;
                    }
                    argname++;
                }
            }
        } else
        #endif
        if (likely(PyUnicode_Check(key))) {
            while (*name) {
                int cmp = (**name == key) ? 0 :
                #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                    (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
                #endif
                    PyUnicode_Compare(**name, key);
                if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                if (cmp == 0) {
                    values[name-argnames] = value;
                    break;
                }
                name++;
            }
            if (*name) continue;
            else {
                PyObject*** argname = argnames;
                while (argname != first_kw_arg) {
                    int cmp = (**argname == key) ? 0 :
                    #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
                        (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
                    #endif
                        PyUnicode_Compare(**argname, key);
                    if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
                    if (cmp == 0) goto arg_passed_twice;
                    argname++;
                }
            }
        } else
            goto invalid_keyword_type;
        if (kwds2) {
            if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
        } else {
            goto invalid_keyword;
        }
    }
    return 0;
arg_passed_twice:
    __Pyx_RaiseDoubleKeywordsError(function_name, key);
    goto bad;
invalid_keyword_type:
    PyErr_Format(PyExc_TypeError,
        "%.200s() keywords must be strings", function_name);
    goto bad;
invalid_keyword:
    PyErr_Format(PyExc_TypeError,
    #if PY_MAJOR_VERSION < 3
        "%.200s() got an unexpected keyword argument '%.200s'",
        function_name, PyString_AsString(key));
    #else
        "%s() got an unexpected keyword argument '%U'",
        function_name, key);
    #endif
bad:
    return -1;
}

/* RaiseArgTupleInvalid */
static void __Pyx_RaiseArgtupleInvalid(
    const char* func_name,
    int exact,
    Py_ssize_t num_min,
    Py_ssize_t num_max,
    Py_ssize_t num_found)
{
    Py_ssize_t num_expected;
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        num_expected = num_min;
        more_or_less = "at least";
    } else {
        num_expected = num_max;
        more_or_less = "at most";
    }
    if (exact) {
        more_or_less = "exactly";
    }
    PyErr_Format(PyExc_TypeError,
                 "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
                 func_name, more_or_less, num_expected,
                 (num_expected == 1) ? "" : "s", num_found);
}

/* RaiseException */
#if PY_MAJOR_VERSION < 3
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
                        CYTHON_UNUSED PyObject *cause) {
    __Pyx_PyThreadState_declare
    Py_XINCREF(type);
    if (!value || value == Py_None)
        value = NULL;
    else
        Py_INCREF(value);
    if (!tb || tb == Py_None)
        tb = NULL;
    else {
        Py_INCREF(tb);
        if (!PyTraceBack_Check(tb)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: arg 3 must be a traceback or None");
            goto raise_error;
        }
    }
    if (PyType_Check(type)) {
#if CYTHON_COMPILING_IN_PYPY
        if (!value) {
            Py_INCREF(Py_None);
            value = Py_None;
        }
#endif
        PyErr_NormalizeException(&type, &value, &tb);
    } else {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto raise_error;
        }
        value = type;
        type = (PyObject*) Py_TYPE(type);
        Py_INCREF(type);
        if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
            PyErr_SetString(PyExc_TypeError,
                "raise: exception class must be a subclass of BaseException");
            goto raise_error;
        }
    }
    __Pyx_PyThreadState_assign
    __Pyx_ErrRestore(type, value, tb);
    return;
raise_error:
    Py_XDECREF(value);
    Py_XDECREF(type);
    Py_XDECREF(tb);
    return;
}
#else
static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
    PyObject* owned_instance = NULL;
    if (tb == Py_None) {
        tb = 0;
    } else if (tb && !PyTraceBack_Check(tb)) {
        PyErr_SetString(PyExc_TypeError,
            "raise: arg 3 must be a traceback or None");
        goto bad;
    }
    if (value == Py_None)
        value = 0;
    if (PyExceptionInstance_Check(type)) {
        if (value) {
            PyErr_SetString(PyExc_TypeError,
                "instance exception may not have a separate value");
            goto bad;
        }
        value = type;
        type = (PyObject*) Py_TYPE(value);
    } else if (PyExceptionClass_Check(type)) {
        PyObject *instance_class = NULL;
        if (value && PyExceptionInstance_Check(value)) {
            instance_class = (PyObject*) Py_TYPE(value);
            if (instance_class != type) {
                int is_subclass = PyObject_IsSubclass(instance_class, type);
                if (!is_subclass) {
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                Py_INCREF(value);
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                goto bad;
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            if (!owned_instance)
                goto bad;
            value = owned_instance;
            if (!PyExceptionInstance_Check(value)) {
                PyErr_Format(PyExc_TypeError,
                             "calling %R should have returned an instance of "
                             "BaseException, not %R",
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                goto bad;
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        PyErr_SetString(PyExc_TypeError,
            "raise: exception class must be a subclass of BaseException");
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    }
    if (cause) {
        PyObject *fixed_cause;
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            fixed_cause = NULL;
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            fixed_cause = PyObject_CallObject(cause, NULL);
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        } else {
            PyErr_SetString(PyExc_TypeError,
                            "exception causes must derive from "
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            goto bad;
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#if CYTHON_COMPILING_IN_PYPY
        PyObject *tmp_type, *tmp_value, *tmp_tb;
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#else
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            Py_INCREF(tb);
            tstate->curexc_traceback = tb;
            Py_XDECREF(tmp_tb);
        }
#endif
    }
bad:
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    return;
}
#endif

/* GetModuleGlobalName */
#if CYTHON_USE_DICT_VERSIONS
static PyObject *__Pyx__GetModuleGlobalName(PyObject *name, PY_UINT64_T *dict_version, PyObject **dict_cached_value)
#else
static CYTHON_INLINE PyObject *__Pyx__GetModuleGlobalName(PyObject *name)
#endif
{
    PyObject *result;
#if !CYTHON_AVOID_BORROWED_REFS
#if CYTHON_COMPILING_IN_CPYTHON && PY_VERSION_HEX >= 0x030500A1
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    __PYX_UPDATE_DICT_CACHE(__pyx_d, result, *dict_cached_value, *dict_version)
    if (likely(result)) {
        return __Pyx_NewRef(result);
    } else if (unlikely(PyErr_Occurred())) {
        return NULL;
    }
#else
    result = PyDict_GetItem(__pyx_d, name);
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#endif
#else
    result = PyObject_GetItem(__pyx_d, name);
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    if (likely(result)) {
        return __Pyx_NewRef(result);
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    PyErr_Clear();
#endif
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/* PyCFunctionFastCall */
#if CYTHON_FAST_PYCCALL
static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
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    PyObject *self = PyCFunction_GET_SELF(func);
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    assert(PyCFunction_Check(func));
    assert(METH_FASTCALL == (flags & ~(METH_CLASS | METH_STATIC | METH_COEXIST | METH_KEYWORDS | METH_STACKLESS)));
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    assert(nargs == 0 || args != NULL);
    /* _PyCFunction_FastCallDict() must not be called with an exception set,
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    if ((PY_VERSION_HEX < 0x030700A0) || unlikely(flags & METH_KEYWORDS)) {
        return (*((__Pyx_PyCFunctionFastWithKeywords)(void*)meth)) (self, args, nargs, NULL);
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}
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/* PyFunctionFastCall */
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static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
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    Py_ssize_t i;
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        Py_INCREF(*args);
        fastlocals[i] = *args++;
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    Py_DECREF(f);
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#if 1 || PY_VERSION_HEX < 0x030600B1
static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) {
    PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
    PyObject *globals = PyFunction_GET_GLOBALS(func);
    PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
    PyObject *closure;
#if PY_MAJOR_VERSION >= 3
    PyObject *kwdefs;
#endif
    PyObject *kwtuple, **k;
    PyObject **d;
    Py_ssize_t nd;
    Py_ssize_t nk;
    PyObject *result;
    assert(kwargs == NULL || PyDict_Check(kwargs));
    nk = kwargs ? PyDict_Size(kwargs) : 0;
    if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
        return NULL;
    }
    if (
#if PY_MAJOR_VERSION >= 3
            co->co_kwonlyargcount == 0 &&
#endif
            likely(kwargs == NULL || nk == 0) &&
            co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
        if (argdefs == NULL && co->co_argcount == nargs) {
            result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
            goto done;
        }
        else if (nargs == 0 && argdefs != NULL
                 && co->co_argcount == Py_SIZE(argdefs)) {
            /* function called with no arguments, but all parameters have
               a default value: use default values as arguments .*/
            args = &PyTuple_GET_ITEM(argdefs, 0);
            result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
            goto done;
        }
    }
    if (kwargs != NULL) {
        Py_ssize_t pos, i;
        kwtuple = PyTuple_New(2 * nk);
        if (kwtuple == NULL) {
            result = NULL;
            goto done;
        }
        k = &PyTuple_GET_ITEM(kwtuple, 0);
        pos = i = 0;
        while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
            Py_INCREF(k[i]);
            Py_INCREF(k[i+1]);
            i += 2;
        }
        nk = i / 2;
    }
    else {
        kwtuple = NULL;
        k = NULL;
    }
    closure = PyFunction_GET_CLOSURE(func);
#if PY_MAJOR_VERSION >= 3
    kwdefs = PyFunction_GET_KW_DEFAULTS(func);
#endif
    if (argdefs != NULL) {
        d = &PyTuple_GET_ITEM(argdefs, 0);
        nd = Py_SIZE(argdefs);
    }
    else {
        d = NULL;
        nd = 0;
    }
#if PY_MAJOR_VERSION >= 3
    result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
                               args, nargs,
                               k, (int)nk,
                               d, (int)nd, kwdefs, closure);
#else
    result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
                               args, nargs,
                               k, (int)nk,
                               d, (int)nd, closure);
#endif
    Py_XDECREF(kwtuple);
done:
    Py_LeaveRecursiveCall();
    return result;
}
#endif
#endif

/* PyObjectCall */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
    PyObject *result;
    ternaryfunc call = func->ob_type->tp_call;
    if (unlikely(!call))
        return PyObject_Call(func, arg, kw);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = (*call)(func, arg, kw);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCall2Args */
static CYTHON_UNUSED PyObject* __Pyx_PyObject_Call2Args(PyObject* function, PyObject* arg1, PyObject* arg2) {
    PyObject *args, *result = NULL;
    #if CYTHON_FAST_PYCALL
    if (PyFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyFunction_FastCall(function, args, 2);
    }
    #endif
    #if CYTHON_FAST_PYCCALL
    if (__Pyx_PyFastCFunction_Check(function)) {
        PyObject *args[2] = {arg1, arg2};
        return __Pyx_PyCFunction_FastCall(function, args, 2);
    }
    #endif
    args = PyTuple_New(2);
    if (unlikely(!args)) goto done;
    Py_INCREF(arg1);
    PyTuple_SET_ITEM(args, 0, arg1);
    Py_INCREF(arg2);
    PyTuple_SET_ITEM(args, 1, arg2);
    Py_INCREF(function);
    result = __Pyx_PyObject_Call(function, args, NULL);
    Py_DECREF(args);
    Py_DECREF(function);
done:
    return result;
}

/* PyObjectCallMethO */
#if CYTHON_COMPILING_IN_CPYTHON
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
    PyObject *self, *result;
    PyCFunction cfunc;
    cfunc = PyCFunction_GET_FUNCTION(func);
    self = PyCFunction_GET_SELF(func);
    if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
        return NULL;
    result = cfunc(self, arg);
    Py_LeaveRecursiveCall();
    if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
        PyErr_SetString(
            PyExc_SystemError,
            "NULL result without error in PyObject_Call");
    }
    return result;
}
#endif

/* PyObjectCallOneArg */
#if CYTHON_COMPILING_IN_CPYTHON
static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_New(1);
    if (unlikely(!args)) return NULL;
    Py_INCREF(arg);
    PyTuple_SET_ITEM(args, 0, arg);
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
#if CYTHON_FAST_PYCALL
    if (PyFunction_Check(func)) {
        return __Pyx_PyFunction_FastCall(func, &arg, 1);
    }
#endif
    if (likely(PyCFunction_Check(func))) {
        if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
            return __Pyx_PyObject_CallMethO(func, arg);
#if CYTHON_FAST_PYCCALL
        } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) {
            return __Pyx_PyCFunction_FastCall(func, &arg, 1);
#endif
        }
    }
    return __Pyx__PyObject_CallOneArg(func, arg);
}
#else
static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
    PyObject *result;
    PyObject *args = PyTuple_Pack(1, arg);
    if (unlikely(!args)) return NULL;
    result = __Pyx_PyObject_Call(func, args, NULL);
    Py_DECREF(args);
    return result;
}
#endif

/* PyIntCompare */
static CYTHON_INLINE PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED long inplace) {
    if (op1 == op2) {
        Py_RETURN_TRUE;
    }
    #if PY_MAJOR_VERSION < 3
    if (likely(PyInt_CheckExact(op1))) {
        const long b = intval;
        long a = PyInt_AS_LONG(op1);
        if (a == b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    #if CYTHON_USE_PYLONG_INTERNALS
    if (likely(PyLong_CheckExact(op1))) {
        int unequal;
        unsigned long uintval;
        Py_ssize_t size = Py_SIZE(op1);
        const digit* digits = ((PyLongObject*)op1)->ob_digit;
        if (intval == 0) {
            if (size == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
        } else if (intval < 0) {
            if (size >= 0)
                Py_RETURN_FALSE;
            intval = -intval;
            size = -size;
        } else {
            if (size <= 0)
                Py_RETURN_FALSE;
        }
        uintval = (unsigned long) intval;
#if PyLong_SHIFT * 4 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 4)) {
            unequal = (size != 5) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[4] != ((uintval >> (4 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 3 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 3)) {
            unequal = (size != 4) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[3] != ((uintval >> (3 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 2 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 2)) {
            unequal = (size != 3) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK)) | (digits[2] != ((uintval >> (2 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
#if PyLong_SHIFT * 1 < SIZEOF_LONG*8
        if (uintval >> (PyLong_SHIFT * 1)) {
            unequal = (size != 2) || (digits[0] != (uintval & (unsigned long) PyLong_MASK))
                 | (digits[1] != ((uintval >> (1 * PyLong_SHIFT)) & (unsigned long) PyLong_MASK));
        } else
#endif
            unequal = (size != 1) || (((unsigned long) digits[0]) != (uintval & (unsigned long) PyLong_MASK));
        if (unequal == 0) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    #endif
    if (PyFloat_CheckExact(op1)) {
        const long b = intval;
        double a = PyFloat_AS_DOUBLE(op1);
        if ((double)a == (double)b) Py_RETURN_TRUE; else Py_RETURN_FALSE;
    }
    return (
        PyObject_RichCompare(op1, op2, Py_EQ));
}

/* PyObject_GenericGetAttrNoDict */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject *__Pyx_RaiseGenericGetAttributeError(PyTypeObject *tp, PyObject *attr_name) {
    PyErr_Format(PyExc_AttributeError,
#if PY_MAJOR_VERSION >= 3
                 "'%.50s' object has no attribute '%U'",
                 tp->tp_name, attr_name);
#else
                 "'%.50s' object has no attribute '%.400s'",
                 tp->tp_name, PyString_AS_STRING(attr_name));
#endif
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyObject_GenericGetAttrNoDict(PyObject* obj, PyObject* attr_name) {
    PyObject *descr;
    PyTypeObject *tp = Py_TYPE(obj);
    if (unlikely(!PyString_Check(attr_name))) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    assert(!tp->tp_dictoffset);
    descr = _PyType_Lookup(tp, attr_name);
    if (unlikely(!descr)) {
        return __Pyx_RaiseGenericGetAttributeError(tp, attr_name);
    }
    Py_INCREF(descr);
    #if PY_MAJOR_VERSION < 3
    if (likely(PyType_HasFeature(Py_TYPE(descr), Py_TPFLAGS_HAVE_CLASS)))
    #endif
    {
        descrgetfunc f = Py_TYPE(descr)->tp_descr_get;
        if (unlikely(f)) {
            PyObject *res = f(descr, obj, (PyObject *)tp);
            Py_DECREF(descr);
            return res;
        }
    }
    return descr;
}
#endif

/* PyObject_GenericGetAttr */
#if CYTHON_USE_TYPE_SLOTS && CYTHON_USE_PYTYPE_LOOKUP && PY_VERSION_HEX < 0x03070000
static PyObject* __Pyx_PyObject_GenericGetAttr(PyObject* obj, PyObject* attr_name) {
    if (unlikely(Py_TYPE(obj)->tp_dictoffset)) {
        return PyObject_GenericGetAttr(obj, attr_name);
    }
    return __Pyx_PyObject_GenericGetAttrNoDict(obj, attr_name);
}
#endif

/* SetVTable */
static int __Pyx_SetVtable(PyObject *dict, void *vtable) {
#if PY_VERSION_HEX >= 0x02070000
    PyObject *ob = PyCapsule_New(vtable, 0, 0);
#else
    PyObject *ob = PyCObject_FromVoidPtr(vtable, 0);
#endif
    if (!ob)
        goto bad;
    if (PyDict_SetItem(dict, __pyx_n_s_pyx_vtable, ob) < 0)
        goto bad;
    Py_DECREF(ob);
    return 0;
bad:
    Py_XDECREF(ob);
    return -1;
}

/* SetupReduce */
static int __Pyx_setup_reduce_is_named(PyObject* meth, PyObject* name) {
  int ret;
  PyObject *name_attr;
  name_attr = __Pyx_PyObject_GetAttrStr(meth, __pyx_n_s_name);
  if (likely(name_attr)) {
      ret = PyObject_RichCompareBool(name_attr, name, Py_EQ);
  } else {
      ret = -1;
  }
  if (unlikely(ret < 0)) {
      PyErr_Clear();
      ret = 0;
  }
  Py_XDECREF(name_attr);
  return ret;
}
static int __Pyx_setup_reduce(PyObject* type_obj) {
    int ret = 0;
    PyObject *object_reduce = NULL;
    PyObject *object_reduce_ex = NULL;
    PyObject *reduce = NULL;
    PyObject *reduce_ex = NULL;
    PyObject *reduce_cython = NULL;
    PyObject *setstate = NULL;
    PyObject *setstate_cython = NULL;
#if CYTHON_USE_PYTYPE_LOOKUP
    if (_PyType_Lookup((PyTypeObject*)type_obj, __pyx_n_s_getstate)) goto GOOD;
#else
    if (PyObject_HasAttr(type_obj, __pyx_n_s_getstate)) goto GOOD;
#endif
#if CYTHON_USE_PYTYPE_LOOKUP
    object_reduce_ex = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD;
#else
    object_reduce_ex = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce_ex); if (!object_reduce_ex) goto BAD;
#endif
    reduce_ex = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_ex); if (unlikely(!reduce_ex)) goto BAD;
    if (reduce_ex == object_reduce_ex) {
#if CYTHON_USE_PYTYPE_LOOKUP
        object_reduce = _PyType_Lookup(&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD;
#else
        object_reduce = __Pyx_PyObject_GetAttrStr((PyObject*)&PyBaseObject_Type, __pyx_n_s_reduce); if (!object_reduce) goto BAD;
#endif
        reduce = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce); if (unlikely(!reduce)) goto BAD;
        if (reduce == object_reduce || __Pyx_setup_reduce_is_named(reduce, __pyx_n_s_reduce_cython)) {
            reduce_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_reduce_cython); if (unlikely(!reduce_cython)) goto BAD;
            ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce, reduce_cython); if (unlikely(ret < 0)) goto BAD;
            ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_reduce_cython); if (unlikely(ret < 0)) goto BAD;
            setstate = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate);
            if (!setstate) PyErr_Clear();
            if (!setstate || __Pyx_setup_reduce_is_named(setstate, __pyx_n_s_setstate_cython)) {
                setstate_cython = __Pyx_PyObject_GetAttrStr(type_obj, __pyx_n_s_setstate_cython); if (unlikely(!setstate_cython)) goto BAD;
                ret = PyDict_SetItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate, setstate_cython); if (unlikely(ret < 0)) goto BAD;
                ret = PyDict_DelItem(((PyTypeObject*)type_obj)->tp_dict, __pyx_n_s_setstate_cython); if (unlikely(ret < 0)) goto BAD;
            }
            PyType_Modified((PyTypeObject*)type_obj);
        }
    }
    goto GOOD;
BAD:
    if (!PyErr_Occurred())
        PyErr_Format(PyExc_RuntimeError, "Unable to initialize pickling for %s", ((PyTypeObject*)type_obj)->tp_name);
    ret = -1;
GOOD:
#if !CYTHON_USE_PYTYPE_LOOKUP
    Py_XDECREF(object_reduce);
    Py_XDECREF(object_reduce_ex);
#endif
    Py_XDECREF(reduce);
    Py_XDECREF(reduce_ex);
    Py_XDECREF(reduce_cython);
    Py_XDECREF(setstate);
    Py_XDECREF(setstate_cython);
    return ret;
}

/* TypeImport */
#ifndef __PYX_HAVE_RT_ImportType
#define __PYX_HAVE_RT_ImportType
static PyTypeObject *__Pyx_ImportType(PyObject *module, const char *module_name, const char *class_name,
    size_t size, enum __Pyx_ImportType_CheckSize check_size)
{
    PyObject *result = 0;
    char warning[200];
    Py_ssize_t basicsize;
#ifdef Py_LIMITED_API
    PyObject *py_basicsize;
#endif
    result = PyObject_GetAttrString(module, class_name);
    if (!result)
        goto bad;
    if (!PyType_Check(result)) {
        PyErr_Format(PyExc_TypeError,
            "%.200s.%.200s is not a type object",
            module_name, class_name);
        goto bad;
    }
#ifndef Py_LIMITED_API
    basicsize = ((PyTypeObject *)result)->tp_basicsize;
#else
    py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
    if (!py_basicsize)
        goto bad;
    basicsize = PyLong_AsSsize_t(py_basicsize);
    Py_DECREF(py_basicsize);
    py_basicsize = 0;
    if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
        goto bad;
#endif
    if ((size_t)basicsize < size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    if (check_size == __Pyx_ImportType_CheckSize_Error && (size_t)basicsize != size) {
        PyErr_Format(PyExc_ValueError,
            "%.200s.%.200s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        goto bad;
    }
    else if (check_size == __Pyx_ImportType_CheckSize_Warn && (size_t)basicsize > size) {
        PyOS_snprintf(warning, sizeof(warning),
            "%s.%s size changed, may indicate binary incompatibility. "
            "Expected %zd from C header, got %zd from PyObject",
            module_name, class_name, size, basicsize);
        if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
    }
    return (PyTypeObject *)result;
bad:
    Py_XDECREF(result);
    return NULL;
}
#endif

/* GetVTable */
static void* __Pyx_GetVtable(PyObject *dict) {
    void* ptr;
    PyObject *ob = PyObject_GetItem(dict, __pyx_n_s_pyx_vtable);
    if (!ob)
        goto bad;
#if PY_VERSION_HEX >= 0x02070000
    ptr = PyCapsule_GetPointer(ob, 0);
#else
    ptr = PyCObject_AsVoidPtr(ob);
#endif
    if (!ptr && !PyErr_Occurred())
        PyErr_SetString(PyExc_RuntimeError, "invalid vtable found for imported type");
    Py_DECREF(ob);
    return ptr;
bad:
    Py_XDECREF(ob);
    return NULL;
}

/* Import */
static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
    PyObject *empty_list = 0;
    PyObject *module = 0;
    PyObject *global_dict = 0;
    PyObject *empty_dict = 0;
    PyObject *list;
    #if PY_MAJOR_VERSION < 3
    PyObject *py_import;
    py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
    if (!py_import)
        goto bad;
    #endif
    if (from_list)
        list = from_list;
    else {
        empty_list = PyList_New(0);
        if (!empty_list)
            goto bad;
        list = empty_list;
    }
    global_dict = PyModule_GetDict(__pyx_m);
    if (!global_dict)
        goto bad;
    empty_dict = PyDict_New();
    if (!empty_dict)
        goto bad;
    {
        #if PY_MAJOR_VERSION >= 3
        if (level == -1) {
            if (strchr(__Pyx_MODULE_NAME, '.')) {
                module = PyImport_ImportModuleLevelObject(
                    name, global_dict, empty_dict, list, 1);
                if (!module) {
                    if (!PyErr_ExceptionMatches(PyExc_ImportError))
                        goto bad;
                    PyErr_Clear();
                }
            }
            level = 0;
        }
        #endif
        if (!module) {
            #if PY_MAJOR_VERSION < 3
            PyObject *py_level = PyInt_FromLong(level);
            if (!py_level)
                goto bad;
            module = PyObject_CallFunctionObjArgs(py_import,
                name, global_dict, empty_dict, list, py_level, (PyObject *)NULL);
            Py_DECREF(py_level);
            #else
            module = PyImport_ImportModuleLevelObject(
                name, global_dict, empty_dict, list, level);
            #endif
        }
    }
bad:
    #if PY_MAJOR_VERSION < 3
    Py_XDECREF(py_import);
    #endif
    Py_XDECREF(empty_list);
    Py_XDECREF(empty_dict);
    return module;
}

/* ImportFrom */
static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
    PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
    if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
        PyErr_Format(PyExc_ImportError,
        #if PY_MAJOR_VERSION < 3
            "cannot import name %.230s", PyString_AS_STRING(name));
        #else
            "cannot import name %S", name);
        #endif
    }
    return value;
}

/* CLineInTraceback */
#ifndef CYTHON_CLINE_IN_TRACEBACK
static int __Pyx_CLineForTraceback(PyThreadState *tstate, int c_line) {
    PyObject *use_cline;
    PyObject *ptype, *pvalue, *ptraceback;
#if CYTHON_COMPILING_IN_CPYTHON
    PyObject **cython_runtime_dict;
#endif
    if (unlikely(!__pyx_cython_runtime)) {
        return c_line;
    }
    __Pyx_ErrFetchInState(tstate, &ptype, &pvalue, &ptraceback);
#if CYTHON_COMPILING_IN_CPYTHON
    cython_runtime_dict = _PyObject_GetDictPtr(__pyx_cython_runtime);
    if (likely(cython_runtime_dict)) {
        __PYX_PY_DICT_LOOKUP_IF_MODIFIED(
            use_cline, *cython_runtime_dict,
            __Pyx_PyDict_GetItemStr(*cython_runtime_dict, __pyx_n_s_cline_in_traceback))
    } else
#endif
    {
      PyObject *use_cline_obj = __Pyx_PyObject_GetAttrStr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback);
      if (use_cline_obj) {
        use_cline = PyObject_Not(use_cline_obj) ? Py_False : Py_True;
        Py_DECREF(use_cline_obj);
      } else {
        PyErr_Clear();
        use_cline = NULL;
      }
    }
    if (!use_cline) {
        c_line = 0;
        PyObject_SetAttr(__pyx_cython_runtime, __pyx_n_s_cline_in_traceback, Py_False);
    }
    else if (use_cline == Py_False || (use_cline != Py_True && PyObject_Not(use_cline) != 0)) {
        c_line = 0;
    }
    __Pyx_ErrRestoreInState(tstate, ptype, pvalue, ptraceback);
    return c_line;
}
#endif

/* CodeObjectCache */
static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
    int start = 0, mid = 0, end = count - 1;
    if (end >= 0 && code_line > entries[end].code_line) {
        return count;
    }
    while (start < end) {
        mid = start + (end - start) / 2;
        if (code_line < entries[mid].code_line) {
            end = mid;
        } else if (code_line > entries[mid].code_line) {
             start = mid + 1;
        } else {
            return mid;
        }
    }
    if (code_line <= entries[mid].code_line) {
        return mid;
    } else {
        return mid + 1;
    }
}
static PyCodeObject *__pyx_find_code_object(int code_line) {
    PyCodeObject* code_object;
    int pos;
    if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
        return NULL;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
        return NULL;
    }
    code_object = __pyx_code_cache.entries[pos].code_object;
    Py_INCREF(code_object);
    return code_object;
}
static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
    int pos, i;
    __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
    if (unlikely(!code_line)) {
        return;
    }
    if (unlikely(!entries)) {
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
        if (likely(entries)) {
            __pyx_code_cache.entries = entries;
            __pyx_code_cache.max_count = 64;
            __pyx_code_cache.count = 1;
            entries[0].code_line = code_line;
            entries[0].code_object = code_object;
            Py_INCREF(code_object);
        }
        return;
    }
    pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
    if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
        PyCodeObject* tmp = entries[pos].code_object;
        entries[pos].code_object = code_object;
        Py_DECREF(tmp);
        return;
    }
    if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
        int new_max = __pyx_code_cache.max_count + 64;
        entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
            __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
        if (unlikely(!entries)) {
            return;
        }
        __pyx_code_cache.entries = entries;
        __pyx_code_cache.max_count = new_max;
    }
    for (i=__pyx_code_cache.count; i>pos; i--) {
        entries[i] = entries[i-1];
    }
    entries[pos].code_line = code_line;
    entries[pos].code_object = code_object;
    __pyx_code_cache.count++;
    Py_INCREF(code_object);
}

/* AddTraceback */
#include "compile.h"
#include "frameobject.h"
#include "traceback.h"
static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
            const char *funcname, int c_line,
            int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyObject *py_srcfile = 0;
    PyObject *py_funcname = 0;
    #if PY_MAJOR_VERSION < 3
    py_srcfile = PyString_FromString(filename);
    #else
    py_srcfile = PyUnicode_FromString(filename);
    #endif
    if (!py_srcfile) goto bad;
    if (c_line) {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #else
        py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
        #endif
    }
    else {
        #if PY_MAJOR_VERSION < 3
        py_funcname = PyString_FromString(funcname);
        #else
        py_funcname = PyUnicode_FromString(funcname);
        #endif
    }
    if (!py_funcname) goto bad;
    py_code = __Pyx_PyCode_New(
        0,
        0,
        0,
        0,
        0,
        __pyx_empty_bytes, /*PyObject *code,*/
        __pyx_empty_tuple, /*PyObject *consts,*/
        __pyx_empty_tuple, /*PyObject *names,*/
        __pyx_empty_tuple, /*PyObject *varnames,*/
        __pyx_empty_tuple, /*PyObject *freevars,*/
        __pyx_empty_tuple, /*PyObject *cellvars,*/
        py_srcfile,   /*PyObject *filename,*/
        py_funcname,  /*PyObject *name,*/
        py_line,
        __pyx_empty_bytes  /*PyObject *lnotab*/
    );
    Py_DECREF(py_srcfile);
    Py_DECREF(py_funcname);
    return py_code;
bad:
    Py_XDECREF(py_srcfile);
    Py_XDECREF(py_funcname);
    return NULL;
}
static void __Pyx_AddTraceback(const char *funcname, int c_line,
                               int py_line, const char *filename) {
    PyCodeObject *py_code = 0;
    PyFrameObject *py_frame = 0;
    PyThreadState *tstate = __Pyx_PyThreadState_Current;
    if (c_line) {
        c_line = __Pyx_CLineForTraceback(tstate, c_line);
    }
    py_code = __pyx_find_code_object(c_line ? -c_line : py_line);
    if (!py_code) {
        py_code = __Pyx_CreateCodeObjectForTraceback(
            funcname, c_line, py_line, filename);
        if (!py_code) goto bad;
        __pyx_insert_code_object(c_line ? -c_line : py_line, py_code);
    }
    py_frame = PyFrame_New(
        tstate,            /*PyThreadState *tstate,*/
        py_code,           /*PyCodeObject *code,*/
        __pyx_d,    /*PyObject *globals,*/
        0                  /*PyObject *locals*/
    );
    if (!py_frame) goto bad;
    __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
    PyTraceBack_Here(py_frame);
bad:
    Py_XDECREF(py_code);
    Py_XDECREF(py_frame);
}

/* CIntFromPyVerify */
#define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
#define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
    __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
#define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
    {\
        func_type value = func_value;\
        if (sizeof(target_type) < sizeof(func_type)) {\
            if (unlikely(value != (func_type) (target_type) value)) {\
                func_type zero = 0;\
                if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
                    return (target_type) -1;\
                if (is_unsigned && unlikely(value < zero))\
                    goto raise_neg_overflow;\
                else\
                    goto raise_overflow;\
            }\
        }\
        return (target_type) value;\
    }

/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
    const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(int) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(int) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(int) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(int),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_short(short value) {
    const short neg_one = (short) ((short) 0 - (short) 1), const_zero = (short) 0;
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(short) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(short) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(short) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(short) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(short) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(short),
                                     little, !is_unsigned);
    }
}

/* CIntToPy */
static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
    const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
    const int is_unsigned = neg_one > const_zero;
    if (is_unsigned) {
        if (sizeof(long) < sizeof(long)) {
            return PyInt_FromLong((long) value);
        } else if (sizeof(long) <= sizeof(unsigned long)) {
            return PyLong_FromUnsignedLong((unsigned long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
            return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
#endif
        }
    } else {
        if (sizeof(long) <= sizeof(long)) {
            return PyInt_FromLong((long) value);
#ifdef HAVE_LONG_LONG
        } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
            return PyLong_FromLongLong((PY_LONG_LONG) value);
#endif
        }
    }
    {
        int one = 1; int little = (int)*(unsigned char *)&one;
        unsigned char *bytes = (unsigned char *)&value;
        return _PyLong_FromByteArray(bytes, sizeof(long),
                                     little, !is_unsigned);
    }
}

/* CIntFromPy */
static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
    const int neg_one = (int) ((int) 0 - (int) 1), const_zero = (int) 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(int) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (int) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case  1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
                            return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
                            return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
                            return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (int) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(int) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (int) 0;
                case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(int,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                            return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                            return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
                            return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(int) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            int val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (int) -1;
        }
    } else {
        int val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (int) -1;
        val = __Pyx_PyInt_As_int(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to int");
    return (int) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to int");
    return (int) -1;
}

/* CIntFromPy */
static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
    const long neg_one = (long) ((long) 0 - (long) 1), const_zero = (long) 0;
    const int is_unsigned = neg_one > const_zero;
#if PY_MAJOR_VERSION < 3
    if (likely(PyInt_Check(x))) {
        if (sizeof(long) < sizeof(long)) {
            __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
        } else {
            long val = PyInt_AS_LONG(x);
            if (is_unsigned && unlikely(val < 0)) {
                goto raise_neg_overflow;
            }
            return (long) val;
        }
    } else
#endif
    if (likely(PyLong_Check(x))) {
        if (is_unsigned) {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case  1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
                            return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
                            return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
                            return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
                        }
                    }
                    break;
            }
#endif
#if CYTHON_COMPILING_IN_CPYTHON
            if (unlikely(Py_SIZE(x) < 0)) {
                goto raise_neg_overflow;
            }
#else
            {
                int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
                if (unlikely(result < 0))
                    return (long) -1;
                if (unlikely(result == 1))
                    goto raise_neg_overflow;
            }
#endif
            if (sizeof(long) <= sizeof(unsigned long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
#endif
            }
        } else {
#if CYTHON_USE_PYLONG_INTERNALS
            const digit* digits = ((PyLongObject*)x)->ob_digit;
            switch (Py_SIZE(x)) {
                case  0: return (long) 0;
                case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
                case  1: __PYX_VERIFY_RETURN_INT(long,  digit, +digits[0])
                case -2:
                    if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 2:
                    if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                            return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -3:
                    if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 3:
                    if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                            return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case -4:
                    if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
                case 4:
                    if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
                        if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
                            __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
                        } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
                            return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
                        }
                    }
                    break;
            }
#endif
            if (sizeof(long) <= sizeof(long)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
#ifdef HAVE_LONG_LONG
            } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
                __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
#endif
            }
        }
        {
#if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
            PyErr_SetString(PyExc_RuntimeError,
                            "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
#else
            long val;
            PyObject *v = __Pyx_PyNumber_IntOrLong(x);
 #if PY_MAJOR_VERSION < 3
            if (likely(v) && !PyLong_Check(v)) {
                PyObject *tmp = v;
                v = PyNumber_Long(tmp);
                Py_DECREF(tmp);
            }
 #endif
            if (likely(v)) {
                int one = 1; int is_little = (int)*(unsigned char *)&one;
                unsigned char *bytes = (unsigned char *)&val;
                int ret = _PyLong_AsByteArray((PyLongObject *)v,
                                              bytes, sizeof(val),
                                              is_little, !is_unsigned);
                Py_DECREF(v);
                if (likely(!ret))
                    return val;
            }
#endif
            return (long) -1;
        }
    } else {
        long val;
        PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
        if (!tmp) return (long) -1;
        val = __Pyx_PyInt_As_long(tmp);
        Py_DECREF(tmp);
        return val;
    }
raise_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "value too large to convert to long");
    return (long) -1;
raise_neg_overflow:
    PyErr_SetString(PyExc_OverflowError,
        "can't convert negative value to long");
    return (long) -1;
}

/* FastTypeChecks */
#if CYTHON_COMPILING_IN_CPYTHON
static int __Pyx_InBases(PyTypeObject *a, PyTypeObject *b) {
    while (a) {
        a = a->tp_base;
        if (a == b)
            return 1;
    }
    return b == &PyBaseObject_Type;
}
static CYTHON_INLINE int __Pyx_IsSubtype(PyTypeObject *a, PyTypeObject *b) {
    PyObject *mro;
    if (a == b) return 1;
    mro = a->tp_mro;
    if (likely(mro)) {
        Py_ssize_t i, n;
        n = PyTuple_GET_SIZE(mro);
        for (i = 0; i < n; i++) {
            if (PyTuple_GET_ITEM(mro, i) == (PyObject *)b)
                return 1;
        }
        return 0;
    }
    return __Pyx_InBases(a, b);
}
#if PY_MAJOR_VERSION == 2
static int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject* exc_type2) {
    PyObject *exception, *value, *tb;
    int res;
    __Pyx_PyThreadState_declare
    __Pyx_PyThreadState_assign
    __Pyx_ErrFetch(&exception, &value, &tb);
    res = exc_type1 ? PyObject_IsSubclass(err, exc_type1) : 0;
    if (unlikely(res == -1)) {
        PyErr_WriteUnraisable(err);
        res = 0;
    }
    if (!res) {
        res = PyObject_IsSubclass(err, exc_type2);
        if (unlikely(res == -1)) {
            PyErr_WriteUnraisable(err);
            res = 0;
        }
    }
    __Pyx_ErrRestore(exception, value, tb);
    return res;
}
#else
static CYTHON_INLINE int __Pyx_inner_PyErr_GivenExceptionMatches2(PyObject *err, PyObject* exc_type1, PyObject *exc_type2) {
    int res = exc_type1 ? __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type1) : 0;
    if (!res) {
        res = __Pyx_IsSubtype((PyTypeObject*)err, (PyTypeObject*)exc_type2);
    }
    return res;
}
#endif
static int __Pyx_PyErr_GivenExceptionMatchesTuple(PyObject *exc_type, PyObject *tuple) {
    Py_ssize_t i, n;
    assert(PyExceptionClass_Check(exc_type));
    n = PyTuple_GET_SIZE(tuple);
#if PY_MAJOR_VERSION >= 3
    for (i=0; i<n; i++) {
        if (exc_type == PyTuple_GET_ITEM(tuple, i)) return 1;
    }
#endif
    for (i=0; i<n; i++) {
        PyObject *t = PyTuple_GET_ITEM(tuple, i);
        #if PY_MAJOR_VERSION < 3
        if (likely(exc_type == t)) return 1;
        #endif
        if (likely(PyExceptionClass_Check(t))) {
            if (__Pyx_inner_PyErr_GivenExceptionMatches2(exc_type, NULL, t)) return 1;
        } else {
        }
    }
    return 0;
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches(PyObject *err, PyObject* exc_type) {
    if (likely(err == exc_type)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        if (likely(PyExceptionClass_Check(exc_type))) {
            return __Pyx_inner_PyErr_GivenExceptionMatches2(err, NULL, exc_type);
        } else if (likely(PyTuple_Check(exc_type))) {
            return __Pyx_PyErr_GivenExceptionMatchesTuple(err, exc_type);
        } else {
        }
    }
    return PyErr_GivenExceptionMatches(err, exc_type);
}
static CYTHON_INLINE int __Pyx_PyErr_GivenExceptionMatches2(PyObject *err, PyObject *exc_type1, PyObject *exc_type2) {
    assert(PyExceptionClass_Check(exc_type1));
    assert(PyExceptionClass_Check(exc_type2));
    if (likely(err == exc_type1 || err == exc_type2)) return 1;
    if (likely(PyExceptionClass_Check(err))) {
        return __Pyx_inner_PyErr_GivenExceptionMatches2(err, exc_type1, exc_type2);
    }
    return (PyErr_GivenExceptionMatches(err, exc_type1) || PyErr_GivenExceptionMatches(err, exc_type2));
}
#endif

/* CheckBinaryVersion */
static int __Pyx_check_binary_version(void) {
    char ctversion[4], rtversion[4];
    PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
    PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
    if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
        char message[200];
        PyOS_snprintf(message, sizeof(message),
                      "compiletime version %s of module '%.100s' "
                      "does not match runtime version %s",
                      ctversion, __Pyx_MODULE_NAME, rtversion);
        return PyErr_WarnEx(NULL, message, 1);
    }
    return 0;
}

/* FunctionImport */
#ifndef __PYX_HAVE_RT_ImportFunction
#define __PYX_HAVE_RT_ImportFunction
static int __Pyx_ImportFunction(PyObject *module, const char *funcname, void (**f)(void), const char *sig) {
    PyObject *d = 0;
    PyObject *cobj = 0;
    union {
        void (*fp)(void);
        void *p;
    } tmp;
    d = PyObject_GetAttrString(module, (char *)"__pyx_capi__");
    if (!d)
        goto bad;
    cobj = PyDict_GetItemString(d, funcname);
    if (!cobj) {
        PyErr_Format(PyExc_ImportError,
            "%.200s does not export expected C function %.200s",
                PyModule_GetName(module), funcname);
        goto bad;
    }
#if PY_VERSION_HEX >= 0x02070000
    if (!PyCapsule_IsValid(cobj, sig)) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, PyCapsule_GetName(cobj));
        goto bad;
    }
    tmp.p = PyCapsule_GetPointer(cobj, sig);
#else
    {const char *desc, *s1, *s2;
    desc = (const char *)PyCObject_GetDesc(cobj);
    if (!desc)
        goto bad;
    s1 = desc; s2 = sig;
    while (*s1 != '\0' && *s1 == *s2) { s1++; s2++; }
    if (*s1 != *s2) {
        PyErr_Format(PyExc_TypeError,
            "C function %.200s.%.200s has wrong signature (expected %.500s, got %.500s)",
             PyModule_GetName(module), funcname, sig, desc);
        goto bad;
    }
    tmp.p = PyCObject_AsVoidPtr(cobj);}
#endif
    *f = tmp.fp;
    if (!(*f))
        goto bad;
    Py_DECREF(d);
    return 0;
bad:
    Py_XDECREF(d);
    return -1;
}
#endif

/* InitStrings */
static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
    while (t->p) {
        #if PY_MAJOR_VERSION < 3
        if (t->is_unicode) {
            *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
        } else if (t->intern) {
            *t->p = PyString_InternFromString(t->s);
        } else {
            *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
        }
        #else
        if (t->is_unicode | t->is_str) {
            if (t->intern) {
                *t->p = PyUnicode_InternFromString(t->s);
            } else if (t->encoding) {
                *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
            } else {
                *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
            }
        } else {
            *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
        }
        #endif
        if (!*t->p)
            return -1;
        if (PyObject_Hash(*t->p) == -1)
            return -1;
        ++t;
    }
    return 0;
}

static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
    return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
}
static CYTHON_INLINE const char* __Pyx_PyObject_AsString(PyObject* o) {
    Py_ssize_t ignore;
    return __Pyx_PyObject_AsStringAndSize(o, &ignore);
}
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
#if !CYTHON_PEP393_ENABLED
static const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    char* defenc_c;
    PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
    if (!defenc) return NULL;
    defenc_c = PyBytes_AS_STRING(defenc);
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    {
        char* end = defenc_c + PyBytes_GET_SIZE(defenc);
        char* c;
        for (c = defenc_c; c < end; c++) {
            if ((unsigned char) (*c) >= 128) {
                PyUnicode_AsASCIIString(o);
                return NULL;
            }
        }
    }
#endif
    *length = PyBytes_GET_SIZE(defenc);
    return defenc_c;
}
#else
static CYTHON_INLINE const char* __Pyx_PyUnicode_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
    if (unlikely(__Pyx_PyUnicode_READY(o) == -1)) return NULL;
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
    if (likely(PyUnicode_IS_ASCII(o))) {
        *length = PyUnicode_GET_LENGTH(o);
        return PyUnicode_AsUTF8(o);
    } else {
        PyUnicode_AsASCIIString(o);
        return NULL;
    }
#else
    return PyUnicode_AsUTF8AndSize(o, length);
#endif
}
#endif
#endif
static CYTHON_INLINE const char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
#if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
    if (
#if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
            __Pyx_sys_getdefaultencoding_not_ascii &&
#endif
            PyUnicode_Check(o)) {
        return __Pyx_PyUnicode_AsStringAndSize(o, length);
    } else
#endif
#if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
    if (PyByteArray_Check(o)) {
        *length = PyByteArray_GET_SIZE(o);
        return PyByteArray_AS_STRING(o);
    } else
#endif
    {
        char* result;
        int r = PyBytes_AsStringAndSize(o, &result, length);
        if (unlikely(r < 0)) {
            return NULL;
        } else {
            return result;
        }
    }
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
   int is_true = x == Py_True;
   if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
   else return PyObject_IsTrue(x);
}
static CYTHON_INLINE int __Pyx_PyObject_IsTrueAndDecref(PyObject* x) {
    int retval;
    if (unlikely(!x)) return -1;
    retval = __Pyx_PyObject_IsTrue(x);
    Py_DECREF(x);
    return retval;
}
static PyObject* __Pyx_PyNumber_IntOrLongWrongResultType(PyObject* result, const char* type_name) {
#if PY_MAJOR_VERSION >= 3
    if (PyLong_Check(result)) {
        if (PyErr_WarnFormat(PyExc_DeprecationWarning, 1,
                "__int__ returned non-int (type %.200s).  "
                "The ability to return an instance of a strict subclass of int "
                "is deprecated, and may be removed in a future version of Python.",
                Py_TYPE(result)->tp_name)) {
            Py_DECREF(result);
            return NULL;
        }
        return result;
    }
#endif
    PyErr_Format(PyExc_TypeError,
                 "__%.4s__ returned non-%.4s (type %.200s)",
                 type_name, type_name, Py_TYPE(result)->tp_name);
    Py_DECREF(result);
    return NULL;
}
static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
#if CYTHON_USE_TYPE_SLOTS
  PyNumberMethods *m;
#endif
  const char *name = NULL;
  PyObject *res = NULL;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_Check(x) || PyLong_Check(x)))
#else
  if (likely(PyLong_Check(x)))
#endif
    return __Pyx_NewRef(x);
#if CYTHON_USE_TYPE_SLOTS
  m = Py_TYPE(x)->tp_as_number;
  #if PY_MAJOR_VERSION < 3
  if (m && m->nb_int) {
    name = "int";
    res = m->nb_int(x);
  }
  else if (m && m->nb_long) {
    name = "long";
    res = m->nb_long(x);
  }
  #else
  if (likely(m && m->nb_int)) {
    name = "int";
    res = m->nb_int(x);
  }
  #endif
#else
  if (!PyBytes_CheckExact(x) && !PyUnicode_CheckExact(x)) {
    res = PyNumber_Int(x);
  }
#endif
  if (likely(res)) {
#if PY_MAJOR_VERSION < 3
    if (unlikely(!PyInt_Check(res) && !PyLong_Check(res))) {
#else
    if (unlikely(!PyLong_CheckExact(res))) {
#endif
        return __Pyx_PyNumber_IntOrLongWrongResultType(res, name);
    }
  }
  else if (!PyErr_Occurred()) {
    PyErr_SetString(PyExc_TypeError,
                    "an integer is required");
  }
  return res;
}
static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
  Py_ssize_t ival;
  PyObject *x;
#if PY_MAJOR_VERSION < 3
  if (likely(PyInt_CheckExact(b))) {
    if (sizeof(Py_ssize_t) >= sizeof(long))
        return PyInt_AS_LONG(b);
    else
        return PyInt_AsSsize_t(b);
  }
#endif
  if (likely(PyLong_CheckExact(b))) {
    #if CYTHON_USE_PYLONG_INTERNALS
    const digit* digits = ((PyLongObject*)b)->ob_digit;
    const Py_ssize_t size = Py_SIZE(b);
    if (likely(__Pyx_sst_abs(size) <= 1)) {
        ival = likely(size) ? digits[0] : 0;
        if (size == -1) ival = -ival;
        return ival;
    } else {
      switch (size) {
         case 2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -2:
           if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -3:
           if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case 4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
         case -4:
           if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
             return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
           }
           break;
      }
    }
    #endif
    return PyLong_AsSsize_t(b);
  }
  x = PyNumber_Index(b);
  if (!x) return -1;
  ival = PyInt_AsSsize_t(x);
  Py_DECREF(x);
  return ival;
}
static CYTHON_INLINE PyObject * __Pyx_PyBool_FromLong(long b) {
  return b ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False);
}
static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
    return PyInt_FromSize_t(ival);
}


#endif /* Py_PYTHON_H */
