README.md
run_pasta.py
run_pasta_gui.py
run_seqtools.py
setup.py
PASTA.egg-info/PKG-INFO
PASTA.egg-info/SOURCES.txt
PASTA.egg-info/dependency_links.txt
PASTA.egg-info/requires.txt
PASTA.egg-info/top_level.txt
PASTA.egg-info/zip-safe
pasta/__init__.py
pasta/alignment.py
pasta/configure.py
pasta/errors.py
pasta/filemgr.py
pasta/mainpasta.py
pasta/pastaalignerjob.py
pasta/pastajob.py
pasta/scheduler.py
pasta/settings.py
pasta/tools.py
pasta/tree.py
pasta/treeholder.py
pasta/usersettingclasses.py
pasta/utility.py
pasta/test/__init__.py
pasta/test/test_aligners.py
pasta/test/test_alignment.py
pasta/test/test_decomp.py
pasta/test/test_init.py
pasta/test/test_main.py
pasta/test/test_merger.py
pasta/test/test_phylogenetic_tree.py
pasta/test/test_raxml.py
pasta/test/test_read.py
pasta/test/test_run_sate.py
pasta/test/test_sateproducts.py
pasta/test/test_tempfs.py
pasta/test/test_treeholder.py
pasta/test/support/__init__.py
pasta/test/support/sate_test_case.py