# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/parascopy, last modified Thu Apr 24 21:53:19 2025
# ------------------------------------------------

package:
  name: parascopy
  version: 1.18.0
source:
  sha256: 29b3ddead7b079959bbdc058bf76b2951be906de7d3105bcfea67accc2c35a1f
  url: https://github.com/tprodanov/parascopy/archive/v1.18.0.tar.gz
build:
  entry_points:
    - parascopy = parascopy.entry_point:main
  number: '0'
  run_exports:
    - parascopy >=1.18.0,<2.0a0
  string: py310h5cf1707_0
requirements:
  build:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.5 hf13058a_0
    - ca-certificates 2025.1.31 hbd8a1cb_1
    - cctools_osx-64 1010.6 hd19c6af_6
    - clang 18.1.8 default_h576c50e_9
    - clang-18 18.1.8 default_h3571c67_9
    - clang_impl_osx-64 18.1.8 h6a44ed1_24
    - clang_osx-64 18.1.8 h7e5c614_24
    - clangxx 18.1.8 default_heb2e8d1_9
    - clangxx_impl_osx-64 18.1.8 h4b7810f_24
    - clangxx_osx-64 18.1.8 h7e5c614_24
    - cmake 4.0.1 h477996e_0
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - icu 75.1 h120a0e1_0
    - krb5 1.21.3 h37d8d59_0
    - ld64_osx-64 951.9 h33512f0_6
    - libclang-cpp18.1 18.1.8 default_h3571c67_9
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.3 hf95d169_0
    - libcxx-devel 18.1.8 h7c275be_8
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libiconv 1.18 h4b5e92a_1
    - libllvm18 18.1.8 default_h3571c67_5
    - liblzma 5.8.1 hd471939_0
    - libmpdec 4.0.0 hfdf4475_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libsqlite 3.49.1 hdb6dae5_2
    - libssh2 1.11.1 h3dc7d44_0
    - libuv 1.50.0 h4cb831e_0
    - libxml2 2.14.2 h8c082e5_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 default_h3571c67_5
    - llvm-tools-18 18.1.8 default_h3571c67_5
    - meson 1.7.1 pyhd8ed1ab_0
    - ncurses 6.5 h0622a9a_3
    - ninja 1.12.1 hd6aca1a_1
    - openssl 3.5.0 hc426f3f_0
    - pkg-config 0.29.2 hf7e621a_1009
    - python 3.13.3 h534c281_101_cp313
    - python_abi 3.13 7_cp313
    - readline 8.2 h7cca4af_2
    - rhash 1.4.5 ha44c9a9_0
    - setuptools 79.0.1 pyhff2d567_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025b h78e105d_0
    - zstd 1.5.7 h8210216_2
  host:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.5 hf13058a_0
    - ca-certificates 2025.1.31 hbd8a1cb_1
    - clang 20.1.3 default_h811ddef_0
    - clang-20 20.1.3 default_hf9570e0_0
    - clang-format 20.1.3 default_hf9570e0_0
    - clang-format-20 20.1.3 default_hf9570e0_0
    - clang-tools 20.1.3 default_hf9570e0_0
    - clangdev 20.1.3 default_hf9570e0_0
    - clangxx 20.1.3 default_hb2955f5_0
    - htslib 1.21 h9f635df_1
    - krb5 1.21.3 h37d8d59_0
    - libclang 20.1.3 default_hf9570e0_0
    - libclang-cpp 20.1.3 default_hf9570e0_0
    - libclang-cpp20.1 20.1.3 default_hf9570e0_0
    - libclang13 20.1.3 default_h9644bed_0
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.3 hf95d169_0
    - libcxx-devel 20.1.3 h7c275be_0
    - libdeflate 1.23 hcc1b750_0
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libiconv 1.18 h4b5e92a_1
    - libllvm20 20.1.3 h29c3a6c_0
    - liblzma 5.8.1 hd471939_0
    - liblzma-devel 5.8.1 hd471939_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libsqlite 3.49.1 hdb6dae5_2
    - libssh2 1.11.1 h3dc7d44_0
    - libxml2 2.13.7 h3fbc333_1
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 20.1.3 h3fe3016_0
    - llvm-tools-20 20.1.3 he90a8e3_0
    - llvmdev 20.1.3 he90a8e3_0
    - ncurses 6.5 h0622a9a_3
    - openssl 3.5.0 hc426f3f_0
    - pip 25.0.1 pyh8b19718_0
    - python 3.10.17 h93e8a92_0_cpython
    - readline 8.2 h7cca4af_2
    - samtools 1.21 ha21ef43_1
    - setuptools 79.0.1 pyhff2d567_0
    - tabixpp 1.1.2 hd217303_4
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025b h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - xz 5.8.1 h357f2ed_0
    - xz-gpl-tools 5.8.1 h357f2ed_0
    - xz-tools 5.8.1 hd471939_0
    - zlib 1.3.1 hd23fc13_2
    - zstd 1.5.7 h8210216_2
  run:
    - biopython >=1.70
    - bwa >=0.7
    - bzip2 >=1.0.8,<2.0a0
    - construct >=2.10
    - htslib >=1.21,<1.22.0a0
    - intervaltree >=3.0
    - libcxx >=18
    - liblzma >=5.8.1,<6.0a0
    - libzlib >=1.3.1,<2.0a0
    - numpy >=1.15
    - parasail-python >=1.2
    - pysam >=0.17
    - python >=3.10,<3.11.0a0
    - python_abi 3.10.* *_cp310
    - samtools >=1.11
    - scipy >=1.5
    - simpleeval >=0.9
    - tabixpp >=1.1.2,<1.1.3.0a0
test:
  commands:
    - parascopy help
    - parascopy pretable --version
    - parascopy table --version
    - parascopy depth --version
    - parascopy cn --version
    - parascopy cn-using --version
    - parascopy pool --version
    - parascopy view --version
    - parascopy psvs --version
    - parascopy msa --version
    - parascopy call --version
    - _parascopy_freebayes --version
about:
  dev_url: https://github.com/tprodanov/parascopy
  doc_url: https://github.com/tprodanov/parascopy/blob/v1.18.0/README.md
  home: https://github.com/tprodanov/parascopy
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Calling paralog-specific copy number and sequence variants in duplicated
    genes using short-read whole-genome sequencing.
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:parascopyvc
    - doi:10.1038/s41467-022-30930-3
    - doi:10.1093/bioinformatics/btad268
