ORTHOLOGER-3.7.1/bin/ODB-mapper.sh
ORTHOLOGER-3.7.1/bin/__pycache__/apply_map.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/busco_get_level.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/check_fasta.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/check_for_bad_cdhit.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/cluster_tools.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/cp_fasta_sequences.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/create_annotated_clusters.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/estimate_time.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/extract_cluster_fasta.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/extract_mapped_from_prof.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/extract_single_inpar.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/fasta_tools.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/fill_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/filter_cdhit.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/filter_masked_fasta.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/filter_pairwise.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/find_best_alignment.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/find_inparsel.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/generate_cluster_ids.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/generate_import_file.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/generate_map.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/generate_pairs.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/generate_runs.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_blastclust_fasta.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_nodes_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_orthodb_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_pair_files.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_pairs.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_sequence_lengths.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/get_subsample_nmax.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/group_by_species.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/inpar2brh.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/insert_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/join_maps.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/newick.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/newick2json.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/nodes_from_ncbi.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/og2xml.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/ogxml2pairs.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/orthologer_tools.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/orthoxml.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/orthoxml2og.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/package_mapping.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/package_mapping_ss.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/package_mapping_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/parse_bm_log.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/plot.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/plot_evolrate.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/plot_timediff.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/plotold.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/propagate_tree.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/relabel_fasta.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/remap.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/split_global_align.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/stats.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/subsample_cluster_genes.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/__pycache__/summarise_stats.cpython-311.pyc
ORTHOLOGER-3.7.1/bin/alignbrh_diamond.sh
ORTHOLOGER-3.7.1/bin/alignment_blast.sh
ORTHOLOGER-3.7.1/bin/alignment_blastold.sh
ORTHOLOGER-3.7.1/bin/alignment_diamond.sh
ORTHOLOGER-3.7.1/bin/alignment_mmseqs.sh
ORTHOLOGER-3.7.1/bin/alignment_mmseqs_brh.sh
ORTHOLOGER-3.7.1/bin/alignment_smmseqs.sh
ORTHOLOGER-3.7.1/bin/alignment_status.sh
ORTHOLOGER-3.7.1/bin/alignment_swipe.sh
ORTHOLOGER-3.7.1/bin/apply_map.py
ORTHOLOGER-3.7.1/bin/archive.sh
ORTHOLOGER-3.7.1/bin/build_import_file.sh
ORTHOLOGER-3.7.1/bin/busco_get_level.py
ORTHOLOGER-3.7.1/bin/calc_size_pairs.sh
ORTHOLOGER-3.7.1/bin/cancel.sh
ORTHOLOGER-3.7.1/bin/check_evolrates.sh
ORTHOLOGER-3.7.1/bin/check_fasta.py
ORTHOLOGER-3.7.1/bin/check_fasta_stats.sh
ORTHOLOGER-3.7.1/bin/check_for_bad_cdhit.py
ORTHOLOGER-3.7.1/bin/check_pipeline_common.sh
ORTHOLOGER-3.7.1/bin/check_pipeline_odb.sh
ORTHOLOGER-3.7.1/bin/check_prerequisites.sh
ORTHOLOGER-3.7.1/bin/check_runas_root.sh
ORTHOLOGER-3.7.1/bin/check_setup_common.sh
ORTHOLOGER-3.7.1/bin/check_setup_odb.sh
ORTHOLOGER-3.7.1/bin/check_short_setup.sh
ORTHOLOGER-3.7.1/bin/cluster_brhclus.sh
ORTHOLOGER-3.7.1/bin/cluster_tools.py
ORTHOLOGER-3.7.1/bin/cmd_orthologer.sh
ORTHOLOGER-3.7.1/bin/cmd_orthomapper.sh
ORTHOLOGER-3.7.1/bin/cmpfasta.sh
ORTHOLOGER-3.7.1/bin/common_base.sh
ORTHOLOGER-3.7.1/bin/common_manage_project.sh
ORTHOLOGER-3.7.1/bin/common_odb.sh
ORTHOLOGER-3.7.1/bin/common_pipeline.sh
ORTHOLOGER-3.7.1/bin/cp_fasta_sequences.py
ORTHOLOGER-3.7.1/bin/create_annotated_clusters.py
ORTHOLOGER-3.7.1/bin/create_fasta.sh
ORTHOLOGER-3.7.1/bin/create_instance.sh
ORTHOLOGER-3.7.1/bin/create_orthomapper_levels.sh
ORTHOLOGER-3.7.1/bin/create_tree_todo.sh
ORTHOLOGER-3.7.1/bin/declare_arrays.sh
ORTHOLOGER-3.7.1/bin/dist_count.pl
ORTHOLOGER-3.7.1/bin/dummy_filter.sh
ORTHOLOGER-3.7.1/bin/dump_common.sh
ORTHOLOGER-3.7.1/bin/error_codes.sh
ORTHOLOGER-3.7.1/bin/estimate_time.py
ORTHOLOGER-3.7.1/bin/extract_cluster_fasta.py
ORTHOLOGER-3.7.1/bin/extract_mapped_from_prof.py
ORTHOLOGER-3.7.1/bin/extract_single_inpar.py
ORTHOLOGER-3.7.1/bin/fasta_stats.sh
ORTHOLOGER-3.7.1/bin/fasta_tools.py
ORTHOLOGER-3.7.1/bin/fill_tree.py
ORTHOLOGER-3.7.1/bin/filter_cdhit.py
ORTHOLOGER-3.7.1/bin/filter_masked_fasta.py
ORTHOLOGER-3.7.1/bin/filter_pairwise.py
ORTHOLOGER-3.7.1/bin/find_all_brhs.sh
ORTHOLOGER-3.7.1/bin/find_best_alignment.py
ORTHOLOGER-3.7.1/bin/find_inparalogs.pl
ORTHOLOGER-3.7.1/bin/find_inparsel.py
ORTHOLOGER-3.7.1/bin/formatdb_blastold.sh
ORTHOLOGER-3.7.1/bin/formatdb_diamond.sh
ORTHOLOGER-3.7.1/bin/formatdb_makeblastdb.sh
ORTHOLOGER-3.7.1/bin/formatdb_mmseqs.sh
ORTHOLOGER-3.7.1/bin/generate_cluster_ids.py
ORTHOLOGER-3.7.1/bin/generate_import_file.py
ORTHOLOGER-3.7.1/bin/generate_map.py
ORTHOLOGER-3.7.1/bin/generate_pairs.py
ORTHOLOGER-3.7.1/bin/generate_runs.py
ORTHOLOGER-3.7.1/bin/generate_version.sh
ORTHOLOGER-3.7.1/bin/get_blastclust_fasta.py
ORTHOLOGER-3.7.1/bin/get_cluster_ids.sh
ORTHOLOGER-3.7.1/bin/get_fasta_cluster.sh
ORTHOLOGER-3.7.1/bin/get_nodes_tree.py
ORTHOLOGER-3.7.1/bin/get_nthreads.sh
ORTHOLOGER-3.7.1/bin/get_orthodb_tree.py
ORTHOLOGER-3.7.1/bin/get_os_resources.sh
ORTHOLOGER-3.7.1/bin/get_pair_files.py
ORTHOLOGER-3.7.1/bin/get_pairs.py
ORTHOLOGER-3.7.1/bin/get_sequence_lengths.py
ORTHOLOGER-3.7.1/bin/get_subsample_nmax.py
ORTHOLOGER-3.7.1/bin/group_by_species.py
ORTHOLOGER-3.7.1/bin/help.sh
ORTHOLOGER-3.7.1/bin/inpar2brh.py
ORTHOLOGER-3.7.1/bin/insert_tree.py
ORTHOLOGER-3.7.1/bin/join_maps.py
ORTHOLOGER-3.7.1/bin/logrotate.sh
ORTHOLOGER-3.7.1/bin/manage_project.sh
ORTHOLOGER-3.7.1/bin/masker_dustmasker.sh
ORTHOLOGER-3.7.1/bin/masker_none.sh
ORTHOLOGER-3.7.1/bin/masker_seg+xnu.sh
ORTHOLOGER-3.7.1/bin/masker_segmasker.sh
ORTHOLOGER-3.7.1/bin/merge_siblings.sh
ORTHOLOGER-3.7.1/bin/newick.py
ORTHOLOGER-3.7.1/bin/newick2json.py
ORTHOLOGER-3.7.1/bin/nodes_from_ncbi.py
ORTHOLOGER-3.7.1/bin/not_used/run_alignbest.sh
ORTHOLOGER-3.7.1/bin/not_used/run_merge_files_tree.sh
ORTHOLOGER-3.7.1/bin/not_used/run_merge_pwc_files.sh
ORTHOLOGER-3.7.1/bin/not_used/run_merge_seq_files.sh
ORTHOLOGER-3.7.1/bin/og2xml.py
ORTHOLOGER-3.7.1/bin/ogxml2pairs.py
ORTHOLOGER-3.7.1/bin/orthologer_tools.py
ORTHOLOGER-3.7.1/bin/orthomapper.sh
ORTHOLOGER-3.7.1/bin/orthomapper_busco.sh
ORTHOLOGER-3.7.1/bin/orthomapper_dbi.sh
ORTHOLOGER-3.7.1/bin/orthomapper_func.sh
ORTHOLOGER-3.7.1/bin/orthomapper_mmprof.sh
ORTHOLOGER-3.7.1/bin/orthoxml.py
ORTHOLOGER-3.7.1/bin/orthoxml2og.py
ORTHOLOGER-3.7.1/bin/package_for_mapping.sh
ORTHOLOGER-3.7.1/bin/package_mapping.py
ORTHOLOGER-3.7.1/bin/package_mapping_ss.py
ORTHOLOGER-3.7.1/bin/package_mapping_tree.py
ORTHOLOGER-3.7.1/bin/package_results.sh
ORTHOLOGER-3.7.1/bin/parse_bm_log.py
ORTHOLOGER-3.7.1/bin/parse_cluster_log.sh
ORTHOLOGER-3.7.1/bin/plot.py
ORTHOLOGER-3.7.1/bin/plot_evolrate.py
ORTHOLOGER-3.7.1/bin/plot_evolrates.sh
ORTHOLOGER-3.7.1/bin/plot_timediff.py
ORTHOLOGER-3.7.1/bin/plotold.py
ORTHOLOGER-3.7.1/bin/postproc_checktree.sh
ORTHOLOGER-3.7.1/bin/postproc_cmpref.sh
ORTHOLOGER-3.7.1/bin/postproc_dist.sh
ORTHOLOGER-3.7.1/bin/postproc_evolrate.sh
ORTHOLOGER-3.7.1/bin/postproc_ogmap.sh
ORTHOLOGER-3.7.1/bin/postproc_ogstats.sh
ORTHOLOGER-3.7.1/bin/postproc_ogxml.sh
ORTHOLOGER-3.7.1/bin/postproc_siblings.sh
ORTHOLOGER-3.7.1/bin/preproc_checkfasta.sh
ORTHOLOGER-3.7.1/bin/profiler.sh
ORTHOLOGER-3.7.1/bin/propagate_tree.py
ORTHOLOGER-3.7.1/bin/random_subsample.sh
ORTHOLOGER-3.7.1/bin/relabel_fasta.py
ORTHOLOGER-3.7.1/bin/remap.py
ORTHOLOGER-3.7.1/bin/replace_ids.sh
ORTHOLOGER-3.7.1/bin/resource_summary.sh
ORTHOLOGER-3.7.1/bin/resume_brhclus.sh
ORTHOLOGER-3.7.1/bin/run_alignment.sh
ORTHOLOGER-3.7.1/bin/run_alignment.sh.old
ORTHOLOGER-3.7.1/bin/run_checktree.sh
ORTHOLOGER-3.7.1/bin/run_cluster.sh
ORTHOLOGER-3.7.1/bin/run_cluster_leaf.sh
ORTHOLOGER-3.7.1/bin/run_cluster_tree.sh
ORTHOLOGER-3.7.1/bin/run_cmpref.sh
ORTHOLOGER-3.7.1/bin/run_distcount.sh
ORTHOLOGER-3.7.1/bin/run_evolrate.sh
ORTHOLOGER-3.7.1/bin/run_formatdb.sh
ORTHOLOGER-3.7.1/bin/run_makebrh.sh
ORTHOLOGER-3.7.1/bin/run_makebrh_base.sh
ORTHOLOGER-3.7.1/bin/run_makebrh_nochecks.sh
ORTHOLOGER-3.7.1/bin/run_makeinpar.sh
ORTHOLOGER-3.7.1/bin/run_makeinpar_nochecks.sh
ORTHOLOGER-3.7.1/bin/run_makeinpar_with_comp.sh
ORTHOLOGER-3.7.1/bin/run_makeinparsel.sh
ORTHOLOGER-3.7.1/bin/run_masker.sh
ORTHOLOGER-3.7.1/bin/run_merge_files.sh
ORTHOLOGER-3.7.1/bin/run_mergeinpar.sh
ORTHOLOGER-3.7.1/bin/run_ogmap.sh
ORTHOLOGER-3.7.1/bin/run_ogstats.sh
ORTHOLOGER-3.7.1/bin/run_ogxml.sh
ORTHOLOGER-3.7.1/bin/run_preproc.sh
ORTHOLOGER-3.7.1/bin/run_script.sh
ORTHOLOGER-3.7.1/bin/run_select.sh
ORTHOLOGER-3.7.1/bin/run_siblings.sh
ORTHOLOGER-3.7.1/bin/run_splitbrh.sh
ORTHOLOGER-3.7.1/bin/run_stats.sh
ORTHOLOGER-3.7.1/bin/run_weakbrh.sh
ORTHOLOGER-3.7.1/bin/salloc_run.sh
ORTHOLOGER-3.7.1/bin/scheduler.sh
ORTHOLOGER-3.7.1/bin/scheduler_common.sh
ORTHOLOGER-3.7.1/bin/scheduler_lsf.sh
ORTHOLOGER-3.7.1/bin/scheduler_none.sh
ORTHOLOGER-3.7.1/bin/scheduler_slurm.sh
ORTHOLOGER-3.7.1/bin/script_header.sh
ORTHOLOGER-3.7.1/bin/select_blastclust.sh
ORTHOLOGER-3.7.1/bin/select_cdhit.sh
ORTHOLOGER-3.7.1/bin/select_none.sh
ORTHOLOGER-3.7.1/bin/set_odbmap_nodes.sh
ORTHOLOGER-3.7.1/bin/set_orthodb_api.sh
ORTHOLOGER-3.7.1/bin/setup.sh
ORTHOLOGER-3.7.1/bin/setup_build.sh
ORTHOLOGER-3.7.1/bin/setup_obsolete.sh
ORTHOLOGER-3.7.1/bin/setup_tmp_clean.sh
ORTHOLOGER-3.7.1/bin/split_global_align.py
ORTHOLOGER-3.7.1/bin/stats.py
ORTHOLOGER-3.7.1/bin/status.sh
ORTHOLOGER-3.7.1/bin/subsample_cluster_genes.py
ORTHOLOGER-3.7.1/bin/subsample_fasta.sh
ORTHOLOGER-3.7.1/bin/subsample_fasta_mapping.sh
ORTHOLOGER-3.7.1/bin/summarise_stats.py
ORTHOLOGER-3.7.1/bin/template_header.sh
ORTHOLOGER-3.7.1/bin/test_compatability.sh
ORTHOLOGER-3.7.1/bin/test_pipeline.sh
ORTHOLOGER-3.7.1/bin/timing_alignment.sh
ORTHOLOGER-3.7.1/bin/timing_base.sh
ORTHOLOGER-3.7.1/bin/version.sh
ORTHOLOGER-3.7.1/bin/watchru.sh
ORTHOLOGER-3.7.1/etc/orthologer_conf.sh
ORTHOLOGER-3.7.1/etc/orthologer_conf.sh.in
ORTHOLOGER-3.7.1/etc/orthologer_defaults_prot.sh
ORTHOLOGER-3.7.1/etc/orthomapper_conf.sh.in
ORTHOLOGER-3.7.1/etc/v10.1/mapping_conf.sh
ORTHOLOGER-3.7.1/etc/v11/2759.nw
ORTHOLOGER-3.7.1/etc/v11/for_clustering_2759.txt
ORTHOLOGER-3.7.1/etc/v11/orthomapper_levels.sh
ORTHOLOGER-3.7.1/etc/v12/2759.nw
ORTHOLOGER-3.7.1/etc/v12/for_clustering_2759.txt
ORTHOLOGER-3.7.1/etc/v12/for_mapping_2759.txt
ORTHOLOGER-3.7.1/etc/v12/odb_nodes.txt
ORTHOLOGER-3.7.1/etc/v12/orthomapper_levels.sh
ORTHOLOGER-3.7.1/etc/v9.1/mapping_conf.sh
ORTHOLOGER-3.7.1/test/cleanup_test_all.sh
ORTHOLOGER-3.7.1/test/data/diptera/n200/1041015_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/104688_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/112268_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/125945_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/139723_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/174628_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/199890_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/28588_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/28612_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/29029_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/29030_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/29031_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/30019_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/30023_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/30025_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/30069_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/315563_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/319348_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/35570_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/37001_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/39758_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/41427_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/42026_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/43041_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/43151_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/54969_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/568069_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/62324_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/69004_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7159_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7160_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7165_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7167_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7168_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7176_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7200_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7213_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7217_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7220_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7222_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7224_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7227_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7230_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7237_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7244_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7245_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7260_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7274_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7282_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7370_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7375_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7394_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7395_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/7397_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/74869_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/n200/74873_0.fs
ORTHOLOGER-3.7.1/test/data/diptera/todo/7147.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7148.nw
ORTHOLOGER-3.7.1/test/data/diptera/todo/7148.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7157.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7164.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7203.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7214.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7215.todo
ORTHOLOGER-3.7.1/test/data/diptera/todo/7393.todo
ORTHOLOGER-3.7.1/test/data/nucl/bacteriax.fna
ORTHOLOGER-3.7.1/test/data/prot/aflor.fs_org
ORTHOLOGER-3.7.1/test/data/prot/badfs.fs
ORTHOLOGER-3.7.1/test/data/prot/hsapi.fs
ORTHOLOGER-3.7.1/test/data/prot/hsapi_with_empty.fs
ORTHOLOGER-3.7.1/test/data/prot/mmula.fs
ORTHOLOGER-3.7.1/test/data/prot/mputo.fs_org
ORTHOLOGER-3.7.1/test/data/prot/saflor.fs_org
ORTHOLOGER-3.7.1/test/data/prot/sbadfs.fs
ORTHOLOGER-3.7.1/test/data/prot/shsapi.fs
ORTHOLOGER-3.7.1/test/data/prot/smmula.fs
ORTHOLOGER-3.7.1/test/data/prot/smputo.fs_org
ORTHOLOGER-3.7.1/test/package/README
ORTHOLOGER-3.7.1/test/package/cleanup.sh
ORTHOLOGER-3.7.1/test/package/run_test.sh
ORTHOLOGER-3.7.1/test/package/setup.sh
ORTHOLOGER-3.7.1/test/proj_empty/README
ORTHOLOGER-3.7.1/test/proj_empty/cleanup_test.sh
ORTHOLOGER-3.7.1/test/proj_empty/setup.sh
ORTHOLOGER-3.7.1/test/proj_map/README
ORTHOLOGER-3.7.1/test/proj_map/cleanup.sh
ORTHOLOGER-3.7.1/test/proj_map/default_config.sh
ORTHOLOGER-3.7.1/test/proj_map/refs/.gitkeep
ORTHOLOGER-3.7.1/test/proj_map/run_test.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_busco.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_busco_auto.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_nucl.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_virus.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_with_busco.sh
ORTHOLOGER-3.7.1/test/proj_map/run_test_with_subset.sh
ORTHOLOGER-3.7.1/test/proj_map/setup.sh
ORTHOLOGER-3.7.1/test/proj_odbmap/cleanup.sh
ORTHOLOGER-3.7.1/test/proj_odbmap/run_test.sh
ORTHOLOGER-3.7.1/test/proj_odbmap/setup.sh
ORTHOLOGER-3.7.1/test/proj_prot/README
ORTHOLOGER-3.7.1/test/proj_prot/cleanup.sh
ORTHOLOGER-3.7.1/test/proj_prot/logs/.gitkeep
ORTHOLOGER-3.7.1/test/proj_prot/refs/.gitkeep
ORTHOLOGER-3.7.1/test/proj_prot/run_test.sh
ORTHOLOGER-3.7.1/test/proj_prot/run_test_localmap.sh
ORTHOLOGER-3.7.1/test/proj_prot/setup.sh
ORTHOLOGER-3.7.1/test/proj_prot/test.txt
ORTHOLOGER-3.7.1/test/proj_tree/.project_defaults.sh
ORTHOLOGER-3.7.1/test/proj_tree/7147.txt
ORTHOLOGER-3.7.1/test/proj_tree/7148.txt
ORTHOLOGER-3.7.1/test/proj_tree/README
ORTHOLOGER-3.7.1/test/proj_tree/check_clusters.sh
ORTHOLOGER-3.7.1/test/proj_tree/cleanup.sh
ORTHOLOGER-3.7.1/test/proj_tree/logs/.gitkeep
ORTHOLOGER-3.7.1/test/proj_tree/refs/.gitkeep
ORTHOLOGER-3.7.1/test/proj_tree/run_test.sh
ORTHOLOGER-3.7.1/test/proj_tree/setup.sh
ORTHOLOGER-3.7.1/test/proj_tree/todo/ref7147.nw
ORTHOLOGER-3.7.1/test/run_test_all.sh
ORTHOLOGER-3.7.1/test/test_common.sh
ORTHOLOGER-3.7.1/test/test_joblog_name.sh
ORTHOLOGER-3.7.1/test/tst_pairs/cleanup.sh
ORTHOLOGER-3.7.1/test/tst_pairs/setup.sh
bin/ODB-mapper
bin/ODB-mapper_v11
bin/ODB-mapper_v12
bin/brhclus
bin/build_import_file
bin/cmpclus
bin/evolrate
bin/extractpairs
bin/findbrh
bin/getclus
bin/getinpar
bin/indexdb
bin/mergeinpar
bin/orthologer
bin/orthomapper
bin/splitgenes
bin/statclus
orthologer
