# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/orthologer, last modified Fri May 23 20:54:22 2025
# ------------------------------------------------

package:
  name: orthologer
  version: 3.7.1
source:
  sha256: 49a6239431548e50f973e4399260e93bba76aa2272657f8c5ea5c5d732c89c19
  url: https://data.orthodb.org/current/download/software/orthologer_3.7.1.tgz
build:
  number: '0'
  run_exports:
    - orthologer >=3.7.1,<4.0a0
  string: py311h8d33bf1_0
requirements:
  build:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.5 hf13058a_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - cctools_osx-64 1010.6 hd19c6af_6
    - clang 18.1.8 default_h576c50e_10
    - clang-18 18.1.8 default_h3571c67_10
    - clang_impl_osx-64 18.1.8 h6a44ed1_24
    - clang_osx-64 18.1.8 h7e5c614_24
    - clangxx 18.1.8 default_heb2e8d1_10
    - clangxx_impl_osx-64 18.1.8 h4b7810f_24
    - clangxx_osx-64 18.1.8 h7e5c614_24
    - cmake 4.0.2 h477996e_0
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - icu 75.1 h120a0e1_0
    - krb5 1.21.3 h37d8d59_0
    - ld64_osx-64 951.9 h33512f0_6
    - libclang-cpp18.1 18.1.8 default_h3571c67_10
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.5 hf95d169_0
    - libcxx-devel 18.1.8 h7c275be_8
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libiconv 1.18 h4b5e92a_1
    - libllvm18 18.1.8 default_h3571c67_5
    - liblzma 5.8.1 hd471939_1
    - libnghttp2 1.64.0 hc7306c3_0
    - libssh2 1.11.1 hed3591d_0
    - libuv 1.50.0 h4cb831e_0
    - libxml2 2.14.2 h8c082e5_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 default_h3571c67_5
    - llvm-tools-18 18.1.8 default_h3571c67_5
    - make 4.4.1 h00291cd_2
    - ncurses 6.5 h0622a9a_3
    - openssl 3.5.0 hc426f3f_1
    - rhash 1.4.5 ha44c9a9_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - zstd 1.5.7 h8210216_2
  host:
    - bash 5.2.21 h0f89e9d_0
    - boost-cpp 1.85.0 hfcd56d9_4
    - bzip2 1.0.8 hfdf4475_7
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - cyrus-sasl 2.1.27 hf9bab2b_7
    - ete3 3.1.3 pyhd8ed1ab_0
    - fmt 10.2.1 h7728843_0
    - glib 2.84.2 h489497d_0
    - glib-tools 2.84.2 hf8faeaf_0
    - gst-plugins-base 1.24.11 h09840cc_0
    - gstreamer 1.24.11 h7d1b200_0
    - icu 75.1 h120a0e1_0
    - krb5 1.21.3 h37d8d59_0
    - libasprintf 0.24.1 h27064b9_0
    - libblas 3.9.0 31_h7f60823_openblas
    - libboost 1.85.0 hcca3243_4
    - libboost-devel 1.85.0 h2b186f8_4
    - libboost-headers 1.85.0 h694c41f_4
    - libcblas 3.9.0 31_hff6cab4_openblas
    - libclang-cpp17 17.0.6 default_h3571c67_8
    - libclang13 20.1.5 default_h9644bed_1
    - libcxx 20.1.5 hf95d169_0
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libgettextpo 0.24.1 h27064b9_0
    - libgfortran 14.2.0 hef36b68_105
    - libgfortran5 14.2.0 h58528f3_105
    - libglib 2.84.2 h3139dbc_0
    - libiconv 1.18 h4b5e92a_1
    - libidn2 2.3.8 he8ff88c_0
    - libintl 0.24.1 h27064b9_0
    - libintl-devel 0.24.1 h27064b9_0
    - libjpeg-turbo 3.1.0 h6e16a3a_0
    - liblapack 3.9.0 31_h236ab99_openblas
    - libllvm17 17.0.6 hbedff68_1
    - libllvm20 20.1.5 h29c3a6c_0
    - liblzma 5.8.1 hd471939_1
    - liblzma-devel 5.8.1 hd471939_1
    - libntlm 1.8 h6e16a3a_0
    - libogg 1.3.5 he3325bb_1
    - libopenblas 0.3.29 openmp_hbf64a52_0
    - libopus 1.5.2 he3325bb_0
    - libpng 1.6.47 h3c4a55f_0
    - libpq 17.5 h9c5cfc2_0
    - libsqlite 3.49.2 hdb6dae5_0
    - libunistring 0.9.10 h0d85af4_0
    - libvorbis 1.3.7 h046ec9c_0
    - libxcb 1.17.0 hf1f96e2_0
    - libxml2 2.13.8 h93c44a6_0
    - libxslt 1.1.39 h03b04e6_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-openmp 18.1.8 ha35c2f8_2
    - lxml 5.4.0 py311h91cdd00_0
    - lz4-c 1.10.0 h240833e_1
    - ncurses 6.5 h0622a9a_3
    - nspr 4.36 h97d8b74_0
    - nss 3.111 h32a8879_0
    - numpy 2.2.6 py311h27c81cd_0
    - openldap 2.6.10 hd8a590d_0
    - openssl 3.5.0 hc426f3f_1
    - packaging 25.0 pyh29332c3_1
    - pcre2 10.45 hf733adb_0
    - ply 3.11 pyhd8ed1ab_3
    - popt 1.16 h7b079dc_2002
    - pthread-stubs 0.4 h00291cd_1002
    - pyqt 5.15.11 py311hc765f6a_0
    - pyqt5-sip 12.17.0 py311h74e74b8_0
    - python 3.11.12 h9ccd52b_0_cpython
    - python_abi 3.11 7_cp311
    - qt-main 5.15.15 h30a8c49_4
    - readline 8.2 h7cca4af_2
    - rsync 3.4.1 hf2bfba0_2
    - scipy 1.15.2 py311h0c91ca8_0
    - setuptools 80.8.0 pyhff2d567_0
    - sip 6.10.0 py311hc356e98_0
    - six 1.17.0 pyhd8ed1ab_0
    - spdlog 1.12.0 h8dd852c_2
    - tk 8.6.13 h1abcd95_1
    - toml 0.10.2 pyhd8ed1ab_1
    - tomli 2.2.1 pyhd8ed1ab_1
    - tzdata 2025b h78e105d_0
    - wget 1.21.4 hca547e6_0
    - xorg-libice 1.1.2 h6e16a3a_0
    - xorg-libsm 1.2.6 h6e16a3a_0
    - xorg-libx11 1.8.12 h217831a_0
    - xorg-libxau 1.0.12 h6e16a3a_0
    - xorg-libxdmcp 1.1.5 h00291cd_0
    - xorg-libxext 1.3.6 h00291cd_0
    - xorg-libxrender 0.9.12 h6e16a3a_0
    - xorg-xextproto 7.3.0 h00291cd_1004
    - xxhash 0.8.3 h13e91ac_0
    - xz 5.8.1 h357f2ed_1
    - xz-gpl-tools 5.8.1 h357f2ed_1
    - xz-tools 5.8.1 hd471939_1
    - zlib 1.3.1 hd23fc13_2
    - zstd 1.5.7 h8210216_2
  run:
    - bash >=4.1
    - biopython
    - blast
    - boost-cpp
    - busco >=5.7.0
    - cd-hit
    - diamond
    - ete3
    - libcxx >=18
    - llvm-openmp >=18.1.8
    - mmseqs2
    - numpy
    - python >=3.11,<3.12.0a0
    - python_abi 3.11.* *_cp311
    - rsync
    - spdlog >=1.12.0,<1.13.0a0
    - wget
test:
  commands:
    - ALLOW_RUNAS_ROOT=1 orthologer -h
about:
  description: Ortholog detection for comparative genomics and fast functional annotation
    behind OrthoDB and BUSCO.
  dev_url: https://gitlab.com/ezlab/orthologer_container
  doc_url: https://orthologer.ezlab.org/#on-orthodb-data
  home: https://orthologer.ezlab.org
  license: GPL-3.0-or-later
  license_family: GPL3
  license_file: LICENSE
  summary: Ortholog detection for comparative genomics and fast functional annotation
    behind OrthoDB and BUSCO.
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  identifiers:
    - PMID:39535043
    - biotools:orthologer
    - doi:10.1093/nar/gkae987
  recipe-maintainers:
    - ftegenfe
