#--------------------------------------------------------------------
# User config

# OrthoDB downloaded data directory - if not set, it will be in user /tmp
export DBI_DOWNLOAD=""

# Database root, should contain one directory per root clade defined (MAP_ROOT_CLADES), name in lower case
export MAP_ORTHODB_DATA=""

# BUSCO enabled
export BUSCO_ENABLED=1

# BUSCO command - to be used is docker image is not available
export BUSCO_CMD=""

# BUSCO docker image - to be used if BUSCO is not locally installed (BUSCO_CMD)
export BUSCO_DOCKER_IMAGE="ezlabgva/busco:v5.7.1_cv1"

# BUSCO data - directory where all BUSCO data is downloaded
export BUSCO_DATA="./busco"

# BUSCO orthodb version string (eg odb10)
export BUSCO_ODB_VERSION="odb10"

# Nr of CPUs available for use
export BUSCO_NCPUS=126

# Run BUSCO offline - assumes the lineages already exists in BUSCO_DATA
export BUSCO_OFFLINE=0

