# User processing location
export MAP_USERLOC=""

# Source database
export MAP_SOURCEDB=""

# Templates
export DIR_TEMPLATES=${DIR_TEMPLATES:-$DIR_PIPELINE/templates}

# all clades
export MAP_ROOT_CLADES=()

# for each clade in list above, define:
#   MAP_NODE_ROOT_<clade>=<root id>
#   MAP_NODES_<clade>=( <label1> <label2> ... )

# the pipeline directory for a given clade is
# $MAP_SOURCEDB/$MAP_DIRS[<lower case clade>]
declare -A MAP_DIRS

# All nodes (labels)
export MAP_ALL_NODES=()

# node to clade map
declare -A MAP_NODE2CLADE
