// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2017.
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// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Lukas Mueller, Markus Mueller, Peter Kunszt $
// --------------------------------------------------------------------------
//
/*
 * SuperHirnUtil.h
 *
 *  Created on: Oct 10, 2011
 *      Author: pkunszt
 */

#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNUTIL_H
#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNUTIL_H

#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h>

#include <OpenMS/CONCEPT/Types.h>
#include <cmath>

namespace OpenMS
{

  class SUPERHIRN_DLLAPI SuperHirnUtil
  {
public:

    /*
     * @brief Compare two masses at the PPM value and decide if they fall into the m/z tolerance window
     *
     */
    static bool compareMassValuesAtPPMLevel(double massA, double massB, double ppmTolerance);

    /*
     * @brief Get mass error at PPM value - basically ppmTolerance * m/z /10^6
     */
    static double getMassErrorAtPPMLevel(double mz, double ppmTolerance);
  };
//////////////////////////////////////////////////////
// compare two masses at the PPM value and decide
// if they fall into the m/z tolerance window
  inline bool SuperHirnUtil::compareMassValuesAtPPMLevel(double mzA, double mzB, double ppmTol)
  {

    // take the average mass, parts per million:
    double avMassPPM = (mzA + mzB) / 2000000.0;
    double ppmDeltaTol = avMassPPM * ppmTol;

    double deltaMass = fabs(mzA - mzB);
    if (deltaMass > ppmDeltaTol)
    {
      return false;
    }

    return true;
  }

//////////////////////////////////////////////////////
// get the mass error at the PPM value
  inline double SuperHirnUtil::getMassErrorAtPPMLevel(double mz, double ppmTol)
  {
    return mz * ppmTol / 1000000.00;
  }

}
#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_SUPERHIRN_SUPERHIRNUTIL_H
