#!/usr/bin/env bash

export NCM_HOME=/opt/mambaforge/envs/bioconda/conda-bld/ngscheckmate_1741103980394/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/NGSCheckMate
echo "Set the path to your reference file with the NCM_REF environment variable"
echo "eg. export NCM_REF=/<path>/<to>/<reference>" 
echo
python /opt/mambaforge/envs/bioconda/conda-bld/ngscheckmate_1741103980394/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/NGSCheckMate/ncm.py "$@"
