bin/mykrobe
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/INSTALLER
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/LICENSE
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/METADATA
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/RECORD
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/REQUESTED
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/WHEEL
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/direct_url.json
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/entry_points.txt
lib/python3.9/site-packages/mykrobe-0.13.0.dist-info/top_level.txt
lib/python3.9/site-packages/mykrobe/__init__.py
lib/python3.9/site-packages/mykrobe/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/base.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/base.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/cli.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/cli.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/constants.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/constants.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/mformat.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/mformat.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/parser.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/parser.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/utils.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/utils.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/version.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/__pycache__/version.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/_vcf/__init__.py
lib/python3.9/site-packages/mykrobe/_vcf/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/_vcf/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/_vcf/__pycache__/models.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/_vcf/__pycache__/models.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/_vcf/models.py
lib/python3.9/site-packages/mykrobe/annotation/__init__.py
lib/python3.9/site-packages/mykrobe/annotation/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/annotation/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/annotation/genes/__init__.py
lib/python3.9/site-packages/mykrobe/annotation/genes/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/annotation/genes/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/annotation/genes/__pycache__/models.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/annotation/genes/__pycache__/models.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/annotation/genes/models.py
lib/python3.9/site-packages/mykrobe/base.py
lib/python3.9/site-packages/mykrobe/cli.py
lib/python3.9/site-packages/mykrobe/cmds/__init__.py
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/amr.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/amr.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/dump.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/dump.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/genotype.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/genotype.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/makeprobes.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/makeprobes.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/panels.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/__pycache__/panels.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/amr.py
lib/python3.9/site-packages/mykrobe/cmds/dump.py
lib/python3.9/site-packages/mykrobe/cmds/genotype.py
lib/python3.9/site-packages/mykrobe/cmds/makeprobes.py
lib/python3.9/site-packages/mykrobe/cmds/panels.py
lib/python3.9/site-packages/mykrobe/cmds/variants/__init__.py
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/add.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/add.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/distance.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/__pycache__/distance.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cmds/variants/add.py
lib/python3.9/site-packages/mykrobe/cmds/variants/distance.py
lib/python3.9/site-packages/mykrobe/constants.py
lib/python3.9/site-packages/mykrobe/cortex/__init__.py
lib/python3.9/site-packages/mykrobe/cortex/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cortex/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cortex/__pycache__/mccortex.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/cortex/__pycache__/mccortex.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/cortex/mccortex.py
lib/python3.9/site-packages/mykrobe/cortex/mccortex31
lib/python3.9/site-packages/mykrobe/data/manifest.json
lib/python3.9/site-packages/mykrobe/data/paratyphiB/manifest.json
lib/python3.9/site-packages/mykrobe/data/paratyphiB/paraB.lineage.20230627.json
lib/python3.9/site-packages/mykrobe/data/paratyphiB/paraB.lineage.20230627.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/paratyphiB/paraB.probe.dtar.20230524.fa.gz
lib/python3.9/site-packages/mykrobe/data/paratyphiB/paraB.probe.invA.20230426.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/manifest.json
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.lineage.20201007.json
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.lineage.20201007.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.lineage.20210201.json
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.lineage.20210201.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.mlst.20201010.sonnei.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.probe.uidA.20201010.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.qrdr.20201010.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/sonnei/sonnei.qrdr.20201010.res_to_drug.json
lib/python3.9/site-packages/mykrobe/data/staph/manifest.json
lib/python3.9/site-packages/mykrobe/data/staph/staph-amr-bradley_2015-feb-17-2017.fasta.gz
lib/python3.9/site-packages/mykrobe/data/staph/staph-species-160227.fasta.gz
lib/python3.9/site-packages/mykrobe/data/staph/variant_to_resistance_drug-20170217.json
lib/python3.9/site-packages/mykrobe/data/tb/manifest.json
lib/python3.9/site-packages/mykrobe/data/tb/mtbc_hierarchy.202309.json
lib/python3.9/site-packages/mykrobe/data/tb/mtbc_hierarchy.json
lib/python3.9/site-packages/mykrobe/data/tb/ncbi_names.202309.json
lib/python3.9/site-packages/mykrobe/data/tb/tb-bradley-probe-set-jan-2019.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-hunt-probe-set-jan-03-2019.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-lineage-bcg-rd1.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-probe-set-202206.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-species-170421.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-species-202309.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb-walker-probe-set-jan-2019.fasta.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb.lineage.20200930.json
lib/python3.9/site-packages/mykrobe/data/tb/tb.lineage.20200930.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/tb/tb.lineage.202206.json
lib/python3.9/site-packages/mykrobe/data/tb/variant_to_resistance_drug-202206.json.gz
lib/python3.9/site-packages/mykrobe/data/tb/variant_to_resistance_drug-jan-03-2019.json.gz
lib/python3.9/site-packages/mykrobe/data/tb/variant_to_resistance_drug.json
lib/python3.9/site-packages/mykrobe/data/typhi/manifest.json
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.amr.plas.20210210.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.amr.plas.20210322.json
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.amr.plas.20220503.json
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.amr.plas.20220503.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.lineage.20210210.json
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.lineage.20210210.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.lineage.20221109.json
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.lineage.20221109.probes.fa.gz
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.mlst.20210322.fa.gz
lib/python3.9/site-packages/mykrobe/data/typhi/typhi.probe.invA.20210322.fa.gz
lib/python3.9/site-packages/mykrobe/metagenomics/__init__.py
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/lineages.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/lineages.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/models.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/models.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/phylo.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/__pycache__/phylo.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/metagenomics/lineages.py
lib/python3.9/site-packages/mykrobe/metagenomics/models.py
lib/python3.9/site-packages/mykrobe/metagenomics/phylo.py
lib/python3.9/site-packages/mykrobe/mformat.py
lib/python3.9/site-packages/mykrobe/parser.py
lib/python3.9/site-packages/mykrobe/predict/__init__.py
lib/python3.9/site-packages/mykrobe/predict/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/predict/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/predict/__pycache__/amr.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/predict/__pycache__/amr.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/predict/__pycache__/models.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/predict/__pycache__/models.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/predict/amr.py
lib/python3.9/site-packages/mykrobe/predict/models.py
lib/python3.9/site-packages/mykrobe/probes/__init__.py
lib/python3.9/site-packages/mykrobe/probes/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/probes/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/probes/__pycache__/models.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/probes/__pycache__/models.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/probes/__pycache__/probe_generation.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/probes/__pycache__/probe_generation.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/probes/models.py
lib/python3.9/site-packages/mykrobe/probes/probe_generation.py
lib/python3.9/site-packages/mykrobe/species_data/__init__.py
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/data_dir.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/data_dir.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/species_dir.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/species_data/__pycache__/species_dir.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/species_data/data_dir.py
lib/python3.9/site-packages/mykrobe/species_data/species_dir.py
lib/python3.9/site-packages/mykrobe/stats/__init__.py
lib/python3.9/site-packages/mykrobe/stats/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/stats/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/stats/__pycache__/stats.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/stats/__pycache__/stats.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/stats/stats.py
lib/python3.9/site-packages/mykrobe/typing/__init__.py
lib/python3.9/site-packages/mykrobe/typing/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__init__.py
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/base.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/base.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/panel.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/panel.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/presence.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/presence.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/variant.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/models/__pycache__/variant.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/models/base.py
lib/python3.9/site-packages/mykrobe/typing/models/panel.py
lib/python3.9/site-packages/mykrobe/typing/models/presence.py
lib/python3.9/site-packages/mykrobe/typing/models/variant.py
lib/python3.9/site-packages/mykrobe/typing/typer/__init__.py
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/base.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/base.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/genotyper.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/genotyper.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/presence.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/presence.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/variant.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/__pycache__/variant.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/typing/typer/base.py
lib/python3.9/site-packages/mykrobe/typing/typer/genotyper.py
lib/python3.9/site-packages/mykrobe/typing/typer/presence.py
lib/python3.9/site-packages/mykrobe/typing/typer/variant.py
lib/python3.9/site-packages/mykrobe/utils.py
lib/python3.9/site-packages/mykrobe/variants/__init__.py
lib/python3.9/site-packages/mykrobe/variants/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/__init__.py
lib/python3.9/site-packages/mykrobe/variants/schema/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__init__.py
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/__init__.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/__init__.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/base.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/base.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/references.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/references.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/variants.cpython-310.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/__pycache__/variants.cpython-39.pyc
lib/python3.9/site-packages/mykrobe/variants/schema/models/base.py
lib/python3.9/site-packages/mykrobe/variants/schema/models/references.py
lib/python3.9/site-packages/mykrobe/variants/schema/models/variants.py
lib/python3.9/site-packages/mykrobe/version.py
