# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /Users/runner/work/1/s/recipes/mykrobe, last modified Mon Jun 10 08:35:14 2024
# ------------------------------------------------

package:
  name: mykrobe
  version: 0.13.0
source:
  sha256: 49662937378a4ff10ffcb3876efcc069be58f0dc183615e9cffb57f51348a45e
  url: https://github.com/Mykrobe-tools/mykrobe/archive/v0.13.0.tar.gz
build:
  entry_points:
    - mykrobe = mykrobe.cli:main
  number: '2'
  run_exports:
    - mykrobe >=0.13.0,<0.14.0a0
  string: py39h1cb89c5_2
requirements:
  build:
    - biopython 1.83 py310hb372a2b_0
    - bzip2 1.0.8 h10d778d_5
    - ca-certificates 2024.6.2 h8857fd0_0
    - cctools_osx-64 973.0.1 habff3f6_15
    - clang 15.0.7 hdae98eb_5
    - clang-15 15.0.7 default_h7151d67_5
    - clang_impl_osx-64 15.0.7 h03d6864_8
    - clang_osx-64 15.0.7 hb91bd55_8
    - clangxx 15.0.7 default_h7151d67_5
    - clangxx_impl_osx-64 15.0.7 h2133e9c_8
    - clangxx_osx-64 15.0.7 hb91bd55_8
    - compiler-rt 15.0.7 ha38d28d_2
    - compiler-rt_osx-64 15.0.7 ha38d28d_2
    - icu 73.2 hf5e326d_0
    - ld64_osx-64 609 h0fd476b_15
    - libblas 3.9.0 22_osx64_openblas
    - libcblas 3.9.0 22_osx64_openblas
    - libclang-cpp15 15.0.7 default_h7151d67_5
    - libcxx 17.0.6 h88467a6_0
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - libiconv 1.17 hd75f5a5_2
    - liblapack 3.9.0 22_osx64_openblas
    - libllvm15 15.0.7 hbedff68_4
    - libopenblas 0.3.27 openmp_hfef2a42_0
    - libsqlite 3.45.3 h92b6c6a_0
    - libxml2 2.12.7 h3e169fe_1
    - libzlib 1.3.1 h87427d6_1
    - llvm-openmp 18.1.7 h15ab845_0
    - llvm-tools 15.0.7 hbedff68_4
    - make 4.3 h22f3db7_1
    - ncurses 6.5 h5846eda_0
    - numpy 1.21.6 py310hb608527_0
    - openssl 3.3.1 h87427d6_0
    - pip 24.0 pyhd8ed1ab_0
    - python 3.10.14 h00d2728_0_cpython
    - python_abi 3.10 4_cp310
    - readline 8.2 h9e318b2_1
    - setuptools 70.0.0 pyhd8ed1ab_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024a h0c530f3_0
    - wheel 0.43.0 pyhd8ed1ab_1
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  host:
    - anytree 2.8.0 pyh9f0ad1d_0
    - biopython 1.83 py39ha09f3b3_0
    - brotli-python 1.1.0 py39h840bb9f_1
    - bzip2 1.0.8 h10d778d_5
    - c-ares 1.28.1 h10d778d_0
    - ca-certificates 2024.6.2 h8857fd0_0
    - certifi 2024.2.2 pyhd8ed1ab_0
    - charset-normalizer 3.3.2 pyhd8ed1ab_0
    - cython 3.0.10 py39hd253f6c_0
    - dnspython 2.6.1 pyhd8ed1ab_1
    - gettext 0.22.5 h5ff76d1_2
    - gettext-tools 0.22.5 h5ff76d1_2
    - icu 73.2 hf5e326d_0
    - idna 3.7 pyhd8ed1ab_0
    - krb5 1.21.2 hb884880_0
    - libabseil 20230802.1 cxx17_h048a20a_0
    - libasprintf 0.22.5 h5ff76d1_2
    - libasprintf-devel 0.22.5 h5ff76d1_2
    - libblas 3.9.0 22_osx64_openblas
    - libboost 1.82.0 h99d8d82_6
    - libcblas 3.9.0 22_osx64_openblas
    - libcurl 8.8.0 hf9fcc65_0
    - libcxx 17.0.6 h88467a6_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 h10d778d_2
    - libffi 3.4.2 h0d85af4_5
    - libgettextpo 0.22.5 h5ff76d1_2
    - libgettextpo-devel 0.22.5 h5ff76d1_2
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - libiconv 1.17 hd75f5a5_2
    - libidn2 2.3.7 h10d778d_0
    - libintl 0.22.5 h5ff76d1_2
    - libintl-devel 0.22.5 h5ff76d1_2
    - liblapack 3.9.0 22_osx64_openblas
    - libnghttp2 1.58.0 h64cf6d3_1
    - libopenblas 0.3.27 openmp_hfef2a42_0
    - libsqlite 3.45.3 h92b6c6a_0
    - libssh2 1.11.0 hd019ec5_0
    - libunistring 0.9.10 h0d85af4_0
    - libzlib 1.2.13 h87427d6_6
    - llvm-openmp 18.1.7 h15ab845_0
    - mongodb 6.0.12 hfc94666_0
    - mongoengine 0.28.2 pyhd8ed1ab_1
    - ncurses 6.5 h5846eda_0
    - numpy 1.21.6 py39hf56e92f_0
    - openssl 3.3.1 h87427d6_0
    - pcre 8.45 he49afe7_0
    - pip 24.0 pyhd8ed1ab_0
    - pymongo 4.7.3 py39h09c4c31_0
    - pysocks 1.7.1 pyha2e5f31_6
    - python 3.9.19 h7a9c478_0_cpython
    - python_abi 3.9 4_cp39
    - pyvcf3 1.0.3 pyhdfd78af_0
    - readline 8.2 h9e318b2_1
    - requests 2.32.3 pyhd8ed1ab_0
    - setuptools 70.0.0 pyhd8ed1ab_0
    - six 1.16.0 pyh6c4a22f_0
    - snappy 1.1.10 h6dc393e_1
    - sniffio 1.3.1 pyhd8ed1ab_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024a h0c530f3_0
    - urllib3 2.2.1 pyhd8ed1ab_0
    - wget 1.21.4 hca547e6_0
    - wheel 0.43.0 pyhd8ed1ab_1
    - xz 5.2.6 h775f41a_0
    - yaml-cpp 0.8.0 he965462_0
    - zlib 1.2.13 h87427d6_6
    - zstd 1.5.6 h915ae27_0
  run:
    - anytree
    - biopython
    - libcxx >=14
    - libzlib >=1.2.13,<2.0a0
    - mongodb >3.0
    - mongoengine >=0.18.0
    - numpy >=1.21.6,<2.0a0
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - pyvcf3 >=1.0.3
    - requests
    - setuptools
    - wget
    - zlib
test:
  commands:
    - mykrobe --version
    - mykrobe --help
    - mykrobe predict --help
    - mykrobe variants --help
    - mykrobe panels describe
    - test -x $PREFIX/lib/python*/site-packages/mykrobe/cortex/mccortex31
    - $PREFIX/lib/python*/site-packages/mykrobe/cortex/mccortex31 uniqkmers -k 7 1
  imports:
    - mykrobe
about:
  description: Rapid antibiotic-resistance predictions from genome sequence data for
    Staphylococcus aureus and Mycobacterium tuberculosis.
  home: https://github.com/Mykrobe-tools/mykrobe
  license: MIT
  license_file: LICENSE
  summary: Antibiotic resistance prediction in minutes
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - martinghunt
    - mbhall88
