Requirements
	- JRE 1.6 or greater
	- Main memory 2GB or greater (recommended 4GB)

Installation
	- Unzip MSGFPlus.zip
	- Place MSGFPlus.jar in any folder

Usage Information
	- Type 'java -jar MSGFPlus.jar' for command line arguments
	- For detailed documentation, visit https://bix-lab.ucsd.edu/pages/viewpage.action?pageId=13533355
	- To convert an mzid output file into a tsv file, run 'java -cp MSGFPlus.jar edu.ucsd.msjava.ui.MzIDToTsv'

Contact Information
	- Sangtae Kim (sak008@ucsd.edu)

Publications
	- MS-GF+: Universal Database Search Tool for Mass Spectrometry, Sangtae Kim, Pavel A. Pevzner, submitted.
	- Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases, Sangtae Kim, Nitin Gupta and Pavel Pevzner, J. Proteome Res., 7 (8), 3354-3363, 2008.
