	        MGLTools LICENSE AGREEMENTS:
----------------------------------------------------------------------------

Unless otherwise specified, this software is licensed by 
Michel F. SANNER and The Scripps Research Institute.
Certain pieces of software in this package provide their own licensing 
scheme which you will find below.

    ______________________________________________________________
    |Packages 	|        SOFTWARE LICENSES 	                  | 
    |           |_________________________________________________|      
    |           |   ACADEMIC 	        |       COMMERCIAL        |
    |___________|_______________________|_________________________|
    |mslib 	|  Free for Academic    | Contact Michel Sanner   |
    |           |                       | (sanner@scripps.edu)    |
    |___________|_______________________|_________________________|
    |UTpackages |  Free for Academic    | Contact Chandrajit Bajaj|
    |           |                       |(bajaj@cs.utexas.edu)    |
    |___________|_______________________|_________________________| 

All the components not specifying their own license are under the
Mozilla open source license.

Although this licensing scheme allows the re-distribution of this software
we would appreciate if people using it would download it from our site.
This helps us keep track of who is using it which is a strong argument when
trying to get money to work on this. Thanks !
If you have any questions please contact Michel SANNER (sanner@scripps.edu).

---------------------------------------------------------------------------
       MGLTOOLS SOFTWARE LICENSE AGREEMENT.
---------------------------------------------------------------------------

  1. Grant Of Limited License; Software Use Restrictions. The programs
     received by you will be used only for NON COMMERCIAL purposes.
     This license is issued to you as an individual.

     For COMMERCIAL use done with the software please contact Michel F. 
     Sanner for details about commercial usage license agreements.
     
     For any question regarding license agreements, please contact
             Michel Sanner:
	     TSRI, Molecular Biology Department, TCP 26,
	     10550 North Torrey Pines Road, La Jolla, CA 92037
	     sanner@scripps.edu
	     tel (858) 784-7742
	     fax (858) 784-2341

  2. COMMERCIAL USAGE is defined as revenues generating activities. These
     include using this software for consulting activities and selling
     applications built on top of, or using this software. Scientific 
     research in an academic environment and teaching are considered 
     NON COMMERCIAL.

  3.  Copying Restrictions. You will not sell or otherwise distribute commercially 
     these programs or derivatives to any other party, whether with or without 
     consideration.

  4. Ownership of Software. You will not obtain, and will not attempt to 
     obtain copyright coverage thereon without the express purpose written 
     consent of The Scripps Research Institute and Dr. Sanner.

  5. IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY
     FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
     ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY
     DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE
     POSSIBILITY OF SUCH DAMAGE.

  6. THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,
     INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,
     FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT.  THIS SOFTWARE
     IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE
     NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
     MODIFICATIONS.


----------------------------------------------------------------------------
MOZILLA OPEN SOURCE LICENSE AGREEMENT
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Mozilla open source license version 1.1
http://www.opensource.org/licenses/mozilla1.1.php


----------------------------------------------------------------------------
MSLIB LICENSE AGREEMENT
----------------------------------------------------------------------------
FOR COMMERCIAL USE OF MSLIB PLEASE CONTACT Michel SANNER (sanner@scripps.edu)
  
THE SCRIPPS RESEARCH INSTITUTE SOFTWARE LICENSE AGREEMENT
  
1. Grant Of Limited License: Software Use Restrictions. You are free to use the
 program (MSMS) ONLY FOR NON-COMMERCIAL SCIENTIFIC RESEARCH. This license is 
issued to you as an individual. For institution wide use or commercial use of 
the software you will have to follow the official registration procedure. To do
 so you can contact us by e-mail (sanner@scripps.edu), mail (Michel Sanner, 
TSRI,Molecular Biology Department, TCP26, 10550 North Torrey Pines Road, 92037 
La Jolla) or fax (858) 784-2341.

2.Credits: WE REQUEST THAT YOU AGREE TO ACKNOWLEDGE THE USE OF THE MSMS 
SOFTWARE THAT RESULTS IN ANY PUBLISHED WORK, INCLUDING SCIENTIFIC PAPERS,
FILMS AND VIDEOTAPES BY CITING THE FOLLOWING REFERENCE:
Sanner, M.F., Spehner, J.-C., and Olson, A.J. (1996) Reduced surface: an 
efficient way to compute molecular surfaces. Biopolymers, Vol. 38, (3), 
305-320.

3. Copying Restrictions: You will not sell or otherwise distribute commercially 
these programs  or derivatives to any other party, whether with or without 
consideration.

4. Ownership of Software: You will not obtain, and will not attempt to obtain 
copyright coverage thereon without the express purpose written consent of The 
Scripps Research Institute.

5. Limitation Of Liability: You will hold harmless from all or any expenses you
may incur as a result of or arising from your use, direct or indirect, of 
these materials. You understand that no other right or license to this program 
or its derivatives is granted or implied as a result of our transmission of 
same to you. 

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UTPACKAGES LICENSE AGREEMENT
---------------------------------------------------------------------------

TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION

1. This software is the copyright of THE UNIVERSITY OF TEXAS AT AUSTIN, 2005. 

2. The software is available under multiple licenses.

3. For non commercial educational and non commercial academic use, the software 
including source code, interface definitions and compile scripts are freely available.
Any distribution of code, library or executables which contains any modules from this 
software should contain, conspicously and appropriately, on each copy, this copyright 
and license notice and should be freely distributed.

4. If you wish to incorporate parts of the Library into other free programs whose distribution 
conditions are incompatible with these, write to the author to ask for permission. 
For software which is copyrighted by the Free Software Foundation, write to the Free Software 
Foundation. 

5. For any other purpose, including commercial purposes, please contact The University of 
Texas at Austin for a different license.

6. Credits: 

This software has been developed at the Computational and Visualization center under 
	
	Dr Chandrajit Bajaj,
	Computational Applied Mathematics Chair in Visualization,
	Professor of Computer Sciences,
	Director of Center for Computational Visualization,
	Department of Computer Sciences & The Institute of Computational Engineering and Sciences,
	 Center for Computational Visualization,
	201 East 24th Street, ACES 2.324A,
	1 University Station, C0200,
	Austin, TX 78712-0027.

We request that you agree to acknowledge the use of the software that results in any published 
work, including scientific papers, films and videotapes by citing the references listed below

For UTblur:

C. Bajaj, V. Siddavanahalli
Fast Feature Adaptive Surfaces and Derivatives Computation for Volumetric Particle Data
ICES and CS technical reports, The University of Texas at Austin, 2005.


For UTisocontour:

C. Bajaj, V. Pascucci, D. Schikore
Accelerated IsoContouring of Scalar Fields
Data Visualization Techniques, edited by C. Bajaj, John Wiley and Sons (1998).

C. Bajaj, V. Pascucci, D. Schikore 
Fast Isocontouring for Improved Interactivity 
Proceedings: ACM Siggraph/IEEE Symposium on Volume Visualization, ACM Press, (1996), 
San Francisco, CA. Pages: 39-46 99


For UTmesh:

Y. Zhang, C. Bajaj
Adaptive and Quality Quadrilateral/Hexahedral Meshing from Volumetric Data
Computer Methods in Applied Mechanics and Engineering (CMAME), in press, 2005.

Y. Zhang, C. Bajaj, B-S. Sohn
3D Finite Element Meshing from Imaging Data
The special issue of Computer Methods in Applied Mechanics and Engineering (CMAME) on Unstructured
Mesh Generation, 194(48-49):5083-5106, 2005.


For UTsdf:

C. Bajaj, V. Siddavanahalli
An Adaptive Grid Based Method for Computing Molecular Surfaces and Properties
ICES and CS Technical Reports, The University of Texas at Austin, 2005.


For UTvolrend:

C. Bajaj, Z. Yu, M. Auer 
Volumetric Feature Extraction and Visualization of Tomographic Molecular Imaging.
Journal of Structural Biology, Volume 144, Issues 1-2, October 2003, Pages 132-143


For UTmolderivatives:

C. Bajaj, V. Siddavanahalli
Fast Feature Adaptive Surfaces and Derivatives Computation for Volumetric Particle Data
ICES and CS Technical Reports, The University of Texas at Austin, 2005.

7. No warranty 

7a. Because the library is licensed free of charge, there is no warranty for the library, 
to the extent permitted by applicable law. except when otherwise stated in writing the copyright
holders and/or other parties provide the library "as is" without warranty of any kind, either 
expressed or implied, including, but not limited to, the implied warranties of merchantability and 
fitness for a particular purpose. the entire risk as to the quality and performance of the library 
is with you. should the library prove defective, you assume the cost of all necessary servicing,
repair or correction. 

7b. In no event unless required by applicable law or agreed to in writing will any copyright 
holder, or any other party who may modify and/or redistribute the library as permitted above, 
be liable to you for damages, including any general, special, incidental or consequential damages 
arising out of the use or inability to use the library (including but not limited to loss of data 
or data being rendered inaccurate or losses sustained by you or third parties or a failure of the 
library to operate with any other software), even if such holder or other party has been advised 
of the possibility of such damages. 

END OF TERMS AND CONDITIONS

------------------------------------------------------------------------------
PYTHON IMAGING LIBRARY (PIL) LICENSE AGREEMENT
-------------------------------------------------------------------------------
The Python Imaging Library (PIL) is
    Copyright © 1997-2004 by Secret Labs AB
    Copyright © 1995-2004 by Fredrik Lundh

By obtaining, using, and/or copying this software and/or its associated 
documentation, you agree that you have read, understood, and will comply with 
the following terms and conditions:

Permission to use, copy, modify, and distribute this software and its 
associated documentation for any purpose and without fee is hereby granted, 
provided that the above copyright notice appears in all copies, and that both 
that copyright notice and this permission notice appear in supporting 
documentation, and that the name of Secret Labs AB or the author not be used 
in advertising or publicity pertaining to distribution of the software without 
specific, written prior permission.

SECRET LABS AB AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS 
SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS. IN 
NO EVENT SHALL SECRET LABS AB OR THE AUTHOR BE LIABLE FOR ANY SPECIAL, 
INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE 
OF THIS SOFTWARE.


------------------------------------------------------------------------------
 APBS License
------------------------------------------------------------------------------

Primary author: Nathan A. Baker <http://agave.wustl.edu/>
(baker@biochem.wustl.edu <mailto:baker@biochem.wustl.edu>)
Department of Biochemistry and Molecular Biophysics
Center for Computational Biology
Washington University in St. Louis
Additional contributing authors <authors.html> listed in the code
documentation.

Copyright (c) 2002-2005. Washington University in St. Louis.
All Rights Reserved.
Copyright (c) 1999-2002. The Regents of the University of California.
Portions Copyright (c) 1995. Michael Holst.

This program is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License
<http://www.gnu.org/licenses/gpl.html> as published by the Free Software
Foundation; either version 2 of the License, or (at your option) any
later version.

This program is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
Public License <http://www.gnu.org/licenses/gpl.html> for more details.

You should have received a copy of the GNU General Public License
<http://www.gnu.org/licenses/gpl.html> along with this program; if not,
write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330,
Boston, MA 02111-1307 USA

------------------------------------------------------------------------------
 munkres License
------------------------------------------------------------------------------
This software is released under a BSD license, adapted from
<http://opensource.org/licenses/bsd-license.php>

Copyright © 2008 Brian M. Clapper
All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:

* Redistributions of source code must retain the above copyright notice,
  this list of conditions and the following disclaimer.

* Redistributions in binary form must reproduce the above copyright notice,
  this list of conditions and the following disclaimer in the documentation
  and/or other materials provided with the distribution.

* Neither the name "clapper.org" nor the names of its contributors may be
  used to endorse or promote products derived from this software without
  specific prior written permission.

THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
