# DO NOT edit this file unless you are aware of the details of Rotamer code
# to add rotamer for non-standard amino acid, append the chi (X) angle
# definition to the file. following the same format
#
# Yong Zhao
#

# format:
# amino_acid_name  a b c d X Y Z ...
#
# a,b,c,d are the four atom names that defines the dihedral angle.
# X Y Z... etc are the names of atoms that will be moved by this rotation.

# attention: the angles are ordered. (cooresponding to X1,X2, X3.. etc)
# all data are seperated by (one or more) space/tab 

# ALA and GLY is not defined 

ARG  N   CA  CB  CG   CG
ARG  CA  CB  CG  CD   CD
ARG  CB  CG  CD  NE   NE
ARG  CG  CD  NE  CZ   CZ NH1 NH2

ASN  N  CA  CB  CG   CG
ASN  CA  CB  CG ND2  OD1 ND2 

ASP  N  CA  CB  CG   CG
ASP  CA CB  CG  OD1  OD1 OD2

CYS  N  CA  CB  SG   SG


GLN  N  CA CB CG   CG
GLN  CA CB CG CD   CD
GLN  CB CG CD OE1  OE1 NE2

GLU  N  CA CB CG   CG
GLU  CA CB CG CD   CD
GLU  CB CG CD OE1  OE1 OE2 


HIS  N   CA  CB  CG   CG 
HIS  CA  CB  CG  ND1  NE1 CE1 NE2 CD2 

ILE N  CA CB  CG1   CG1 CG2
ILE CA CB CG1 CD1   CD1


LEU  N  CA CB CG   CG 
LEU  CA CB CG CD1  CD1 CD2  

LYS N  CA CB CG   CG
LYS CA CB CG CD   CD
LYS CB CG CD CE   CE
LYS CG CD CE NZ   NZ

MET N  CA CB CG   CG
MET CA CB CG SD   SD
MET CB CG SD CE   CE



PHE  N  CA CB CG   CG 
PHE  CA CB CG CD1  CD1 CD2 CE1 CE2 CZ


PRO  N  CA CB CG   CG 
PRO  CA CB CG CD   CD


SER N  CA CB OG    OG

THR N CA CB CG2    CG2  OG1

TRP N CA CB CG    CG 
TRP CA CB CG CD1  CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 CH2

TYR N CA CB CG    CG 
TYR CA CB CG CD1  CD1 CD2 CE1 CE2 CZ OH 


VAL N  CA CB CG1   CG1 CG2




