########################################################################
#
#    Vision Network - Python source code - file generated by vision
#    Wednesday 11 April 2007 11:34:41 
#    
#       The Scripps Research Institute (TSRI)
#       Molecular Graphics Lab
#       La Jolla, CA 92037, USA
#
# Copyright: Daniel Stoffler, Michel Sanner and TSRI
#   
# revision: Guillaume Vareille
#  
#########################################################################
#
# $Header: /mnt/raid/services/cvs/python/packages/share1.5/Pmv/VisionInterface/APBSPot2MSMS_net.py,v 1.17 2007/04/11 20:43:22 sargis Exp $
#
# $Id: APBSPot2MSMS_net.py,v 1.17 2007/04/11 20:43:22 sargis Exp $
#

from traceback import print_exc
## loading libraries ##
from Pmv.VisionInterface.PmvNodes import pmvlib
masterNet.getEditor().addLibraryInstance(pmvlib,"Pmv.VisionInterface.PmvNodes", "pmvlib")

from Volume.VisionInterface.VolumeNodes import vollib
masterNet.getEditor().addLibraryInstance(vollib,"Volume.VisionInterface.VolumeNodes", "vollib")

from Vision.StandardNodes import stdlib
masterNet.getEditor().addLibraryInstance(stdlib,"Vision.StandardNodes", "stdlib")

from DejaVu.VisionInterface.DejaVuNodes import vizlib
masterNet.getEditor().addLibraryInstance(vizlib,"DejaVu.VisionInterface.DejaVuNodes", "vizlib")

try:
    ## saving node Pmv ##
    from Pmv.VisionInterface.PmvNodes import PmvNode
    Pmv_0 = PmvNode(vf=masterNet.editor.vf, constrkw = {'vf': 'masterNet.editor.vf'}, name='Pmv', library=pmvlib)
    masterNet.addNode(Pmv_0,35,8)
except:
    print "WARNING: failed to restore PmvNode named Pmv in network masterNet"
    print_exc()
    Pmv_0=None

try:
    ## saving node Get MSMS Geom ##
    from Pmv.VisionInterface.PmvNodes import GetMSMSGeom
    Get_MSMS_Geom_1 = GetMSMSGeom(constrkw = {}, name='Get MSMS Geom', library=pmvlib)
    masterNet.addNode(Get_MSMS_Geom_1,35,147)
except:
    print "WARNING: failed to restore GetMSMSGeom named Get MSMS Geom in network masterNet"
    print_exc()
    Get_MSMS_Geom_1=None

try:
    ## saving node Choose Molecule ##
    from Pmv.VisionInterface.PmvNodes import PmvMoleculeChooser
    Choose_Molecule_3 = PmvMoleculeChooser(constrkw = {}, name='Choose Molecule', library=pmvlib)
    masterNet.addNode(Choose_Molecule_3,0,60)
    Choose_Molecule_3.inputPortByName['molecule'].widget.set("", run=False)
    apply(Choose_Molecule_3.configure, (), {'expanded': True})
except:
    print "WARNING: failed to restore PmvMoleculeChooser named Choose Molecule in network masterNet"
    print_exc()
    Choose_Molecule_3=None

try:
    ## saving node Map Pot On Geom ##
    from DejaVu.VisionInterface.MapPotOnGeom import MapPotOnGeom
    Map_Pot_On_Geom_4 = MapPotOnGeom(constrkw = {}, name='Map Pot On Geom', library=vizlib)
    masterNet.addNode(Map_Pot_On_Geom_4,250,181)
    Offset_9 = Map_Pot_On_Geom_4.macroNetwork.nodes[4]
    Offset_9.inputPortByName['dial'].widget.set(1.0, run=False)
    call_method_13 = Map_Pot_On_Geom_4.macroNetwork.nodes[8]
    call_method_13.inputPortByName['signature'].widget.set("Set materials inheritMaterial", run=False)
    Get_viewer_17 = Map_Pot_On_Geom_4.macroNetwork.nodes[12]
    apply(Get_viewer_17.inputPortByName['attr'].widget.configure, (), {'choices': ('viewer',)})
    Get_viewer_17.inputPortByName['attr'].widget.set("viewer", run=False)
    Slice_Data_18 = Map_Pot_On_Geom_4.macroNetwork.nodes[13]
    Slice_Data_18.inputPortByName['_slice'].widget.set("[0]", run=False)
    from Vision.StandardNodes import Generic
    Generic_22 = Generic(constrkw = {}, name='Generic', library=stdlib)
    Map_Pot_On_Geom_4.macroNetwork.addNode(Generic_22,510,484)
    apply(Generic_22.addInputPort, (), {'name': 'surf', 'cast': True, 'datatype': 'geom', 'height': 8, 'width': 12, 'shape': 'rect', 'color': 'red'})
    apply(Generic_22.addInputPort, (), {'name': 'colors', 'cast': True, 'datatype': 'colorfloat3or4(0)', 'height': 8, 'width': 12, 'shape': 'rect', 'color': 'orange'})
    code = """def doit(self, geom, colors):
    geomC = geom.mol.geomContainer
    surfName = geom.userName
    geom.apbs_colors = colors
    surf = geomC.msms[surfName][0]
    surfName = geom.userName
    surfNum = geomC.msms[surfName][1]
    atomIndices = []
    indName = '__surfIndex%d__'%surfNum
    for a in geom.mol.allAtoms.data:
        atomIndices.append(a.__dict__[indName])
    # get the indices of closest atoms
    dum1, vi, dum2 = surf.getTriangles(atomIndices)   
    geom.apbs_dum1 = dum1
    for atom in geom.mol.allAtoms:
        atom.colors[surfName] = (1.5,1.5,1.5)
"""
    Generic_22.configure(function=code)

    ## saving connections for network Map Pot On Geom ##
    Map_Pot_On_Geom_4.macroNetwork.freeze()
    Color_Map_12 = Map_Pot_On_Geom_4.macroNetwork.nodes[7]
    if Color_Map_12 is not None and Generic_22 is not None:
        try:
            Map_Pot_On_Geom_4.macroNetwork.connectNodes(
                Color_Map_12, Generic_22, "mappedColors", "colors", blocking=True)
        except:
            print "WARNING: failed to restore connection between Color_Map_12 and Generic_22 in network Map_Pot_On_Geom_4.macroNetwork"
    input_Ports_5 = Map_Pot_On_Geom_4.macroNetwork.ipNode
    if input_Ports_5 is not None and Generic_22 is not None:
        try:
            Map_Pot_On_Geom_4.macroNetwork.connectNodes(
                input_Ports_5, Generic_22, "getSurfaceVFN_geometry", "surf", blocking=True)
        except:
            print "WARNING: failed to restore connection between input_Ports_5 and Generic_22 in network Map_Pot_On_Geom_4.macroNetwork"
    Map_Pot_On_Geom_4.macroNetwork.unfreeze()
    Map_Pot_On_Geom_4.shrink()
except:
    print "WARNING: failed to restore MapPotOnGeom named Map Pot On Geom in network masterNet"
    print_exc()
    Map_Pot_On_Geom_4=None

try:
    ## saving node Pmv Viewer ##
    from Pmv.VisionInterface.PmvNodes import PmvViewer
    Pmv_Viewer_23 = PmvViewer(viewer=masterNet.editor.vf.GUI.VIEWER, constrkw = {'viewer': 'masterNet.editor.vf.GUI.VIEWER'}, name='Pmv Viewer', library=pmvlib)
    masterNet.addNode(Pmv_Viewer_23,250,252)
except:
    print "WARNING: failed to restore PmvViewer named Pmv Viewer in network masterNet"
    print_exc()
    Pmv_Viewer_23=None

try:
    ## saving node Pmv Grids ##
    from Volume.VisionInterface.VolumeNodes import PmvGridChooser
    Pmv_Grids_24 = PmvGridChooser(constrkw = {}, name='Pmv Grids', library=vollib)
    masterNet.addNode(Pmv_Grids_24,267,13)
    apply(Pmv_Grids_24.configure, (), {'expanded': True})
except:
    print "WARNING: failed to restore PmvGridChooser named Pmv Grids in network masterNet"
    print_exc()
    Pmv_Grids_24=None

masterNet.freeze()

## saving connections for network APBSPot2MSMS ##
if Pmv_0 is not None and Choose_Molecule_3 is not None:
    try:
        masterNet.connectNodes(
            Pmv_0, Choose_Molecule_3, "PMV", "Pmv", blocking=True)
    except:
        print "WARNING: failed to restore connection between Pmv_0 and Choose_Molecule_3 in network masterNet"
if Choose_Molecule_3 is not None and Get_MSMS_Geom_1 is not None:
    try:
        masterNet.connectNodes(
            Choose_Molecule_3, Get_MSMS_Geom_1, "molecule", "molecule", blocking=True)
    except:
        print "WARNING: failed to restore connection between Choose_Molecule_3 and Get_MSMS_Geom_1 in network masterNet"
if Get_MSMS_Geom_1 is not None and Map_Pot_On_Geom_4 is not None:
    try:
        masterNet.connectNodes(
            Get_MSMS_Geom_1, Map_Pot_On_Geom_4, "msmsGeom", "getSurfaceVFN_geometry", blocking=True)
    except:
        print "WARNING: failed to restore connection between Get_MSMS_Geom_1 and Map_Pot_On_Geom_4 in network masterNet"
if Map_Pot_On_Geom_4 is not None and Pmv_Viewer_23 is not None:
    try:
        masterNet.connectNodes(
            Map_Pot_On_Geom_4, Pmv_Viewer_23, "Color Map_legend", "geometries", blocking=True)
    except:
        print "WARNING: failed to restore connection between Map_Pot_On_Geom_4 and Pmv_Viewer_23 in network masterNet"
if Pmv_Grids_24 is not None and Map_Pot_On_Geom_4 is not None:
    try:
        masterNet.connectNodes(
            Pmv_Grids_24, Map_Pot_On_Geom_4, "grid", "triInterp_grid", blocking=True)
    except:
        print "WARNING: failed to restore connection between Pmv_Grids_24 and Map_Pot_On_Geom_4 in network masterNet"
masterNet.unfreeze()
#masterNet.run()

