LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
./SPARSE.py
./__init__.py
EM/Makefile
EM/ipopt_nlp.cpp
EM/ipopt_nlp.h
EM/ipopt_nlp.o
EM/ipopt_run.cpp
EM/ipopt_run.h
EM/ipopt_run.o
EM/solve-model
EM/solve_model_main.cpp
EM/solve_model_main.o
EM/Ipopt/include/IpAlgTypes.hpp
EM/Ipopt/include/IpBlas.hpp
EM/Ipopt/include/IpCachedResults.hpp
EM/Ipopt/include/IpCompoundVector.hpp
EM/Ipopt/include/IpDebug.hpp
EM/Ipopt/include/IpDenseVector.hpp
EM/Ipopt/include/IpException.hpp
EM/Ipopt/include/IpIpoptApplication.hpp
EM/Ipopt/include/IpIpoptCalculatedQuantities.hpp
EM/Ipopt/include/IpIpoptData.hpp
EM/Ipopt/include/IpIpoptNLP.hpp
EM/Ipopt/include/IpIteratesVector.hpp
EM/Ipopt/include/IpJournalist.hpp
EM/Ipopt/include/IpLapack.hpp
EM/Ipopt/include/IpMatrix.hpp
EM/Ipopt/include/IpNLP.hpp
EM/Ipopt/include/IpNLPScaling.hpp
EM/Ipopt/include/IpObserver.hpp
EM/Ipopt/include/IpOptionsList.hpp
EM/Ipopt/include/IpOrigIpoptNLP.hpp
EM/Ipopt/include/IpReferenced.hpp
EM/Ipopt/include/IpRegOptions.hpp
EM/Ipopt/include/IpReturnCodes.h
EM/Ipopt/include/IpReturnCodes.hpp
EM/Ipopt/include/IpReturnCodes.inc
EM/Ipopt/include/IpReturnCodes_inc.h
EM/Ipopt/include/IpSmartPtr.hpp
EM/Ipopt/include/IpSolveStatistics.hpp
EM/Ipopt/include/IpStdCInterface.h
EM/Ipopt/include/IpSymMatrix.hpp
EM/Ipopt/include/IpTNLP.hpp
EM/Ipopt/include/IpTNLPAdapter.hpp
EM/Ipopt/include/IpTNLPReducer.hpp
EM/Ipopt/include/IpTaggedObject.hpp
EM/Ipopt/include/IpTimedTask.hpp
EM/Ipopt/include/IpTimingStatistics.hpp
EM/Ipopt/include/IpTypes.hpp
EM/Ipopt/include/IpUtils.hpp
EM/Ipopt/include/IpVector.hpp
EM/Ipopt/include/IpoptConfig.h
EM/Ipopt/include/ThirdParty/dmumps_c.h
EM/Ipopt/include/ThirdParty/mpi.h
EM/Ipopt/include/ThirdParty/mumps_c_types.h
EM/Ipopt/include/ThirdParty/mumps_compat.h
EM/Ipopt/lib64/libcoinblas.a
EM/Ipopt/lib64/libcoinblas.la
EM/Ipopt/lib64/libcoinlapack.a
EM/Ipopt/lib64/libcoinlapack.la
EM/Ipopt/lib64/libcoinmumps.a
EM/Ipopt/lib64/libcoinmumps.la
EM/Ipopt/lib64/libfblas.a
EM/Ipopt/lib64/libipopt.a
EM/Ipopt/lib64/libipopt.la
EM/Ipopt/lib64/liblapack.a
EM/Ipopt/lib64/pkgconfig/coinblas.pc
EM/Ipopt/lib64/pkgconfig/coinlapack.pc
EM/Ipopt/lib64/pkgconfig/coinmumps.pc
EM/Ipopt/lib64/pkgconfig/ipopt.pc
bin/bowtie2
bin/bowtie2-align-l
bin/bowtie2-align-s
bin/bowtie2-build
bin/bowtie2-build-l
bin/bowtie2-build-s
bin/mash
bin/mash-license
bin/minimap2
docs/Makefile
docs/conf.py
docs/custom.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/map.rst
docs/mash.rst
docs/output.rst
docs/parameter.rst
docs/refseq.rst
docs/representative.rst
docs/rtd.requirements.txt
docs/toyexample.rst
meta_sparse.egg-info/PKG-INFO
meta_sparse.egg-info/SOURCES.txt
meta_sparse.egg-info/dependency_links.txt
meta_sparse.egg-info/entry_points.txt
meta_sparse.egg-info/requires.txt
meta_sparse.egg-info/top_level.txt
modules/A1_db_create.py
modules/A2_db_index.py
modules/A3_db_MapDB.py
modules/B1_query_metadata.py
modules/B1_query_metadata.pyc
modules/B2_query_reads.py
modules/B2_query_reads.pyc
modules/B3_query_sample.py
modules/C1_modify_metadata.py
modules/C2_get_specific_reads.py
modules/D1_sparse_parse.py
modules/__init__.py
modules/__init__.pyc
modules/minihash.capnp
modules/parameter.py
modules/utils.py
modules/utils.pyc