fimo
/Users/cegrant/meme_4.12.0/bin/fimo --parse-genomic-coord --verbosity 1 --oc memechip_example_output_files/fimo_out_3 --bgfile memechip_example_output_files/background --motif MA0545.1 JASPAR_CORE_2014.meme memechip_example_output_files/Klf1.fna
JASPAR_CORE_2014.meme
memechip_example_output_files/Klf1.fna
0.0001
GAACAGCTGTG
0.306
CAACAGATGTT
0.334
GCACAGCTGTT
0.334
CACCAGCTGGC
0.334
CAACAGCTGTC
0.06
AGACAGCTGTT
0.334
CATCAGCTGAC
0.411
GACCAGCTGGC
0.334
CCACAGCTGCC
0.329
GAGCAACTGGC
0.334
CAGCAACTGAT
0.395
GAGCAGATGAC
0.374
CAACAGATGGC
0.329
AAGCAGTTGAC
0.336
AAGCAGCTGGC
0.306
CCACAGCTGTC
0.313
CAACAGCTGCT
0.294
CAGCAGCTGTT
0.306
AGACAGTTGAC
0.373
AAACAGTTGGT
0.334
AGGCAGCTGCC
0.398
CAACAGCTGTC
0.06
GGACAGCTGTT
0.321
CCACAGCTGGC
0.329
GAACAGATGAC
0.323
CATCAGCTGAC
0.411
GAACAACTGTC
0.294
CAGCAACTGGC
0.334
GAGCAGATGTC
0.344
AAACAGCTGAG
0.334
GGGCAGCTGGC
0.334
CAGCAGCTGGC
0.294
CGGCAGCTGGC
0.334
CCACAGCTGGC
0.329
AAGCAGCTGGT
0.336
CAGCAGTTGCC
0.329
CCACAGCTGAC
0.329
GAGCAGCTGCG
0.398
CACCAGCTGTC
0.329
AAACAGCTGTG
0.329
GCACAGCTGTT
0.334
CACCAGCTGGC
0.334
TAGCAGCTGTC
0.329
GGACAGCTGCT
0.329
AAGCAGCTGTC
0.295
GGGCAGCTGGC
0.334
CAGCAGTTGGT
0.376
GCACAGCTGGT
0.374
CCACAGCTGAT
0.365
TAGCAGCTGAC
0.334
GAACAGCTGAG
0.323
GAGCAGCTGTG
0.344
GAGCAGCTGAG
0.374
CACCAGCTGAT
0.397
CAACAGCTGTC
0.06
AGACAGCTGGC
0.329
GAGCAGTTGCC
0.329
TAGCAGCTGCC
0.344
GCACAGCTGAT
0.36
AAACAGCTGGC
0.263
GAGCAACTGAT
0.381
GAACAGTTGGC
0.294
CCACAGCTGCC
0.329
TAACAGCTGTC
0.294
AGACAGCTGTT
0.334
GAACAGATGAT
0.344
CACCAGCTGGC
0.334
GGACAGATGTC
0.381
CAACAAATGTC
0.374
GAACAGCTGGT
0.294
GGGCAGCTGAC
0.334
GCACAGTTGTC
0.344
CCACAGCTGCC
0.329
CAGCAGCTGTG
0.35
CCACAGCTGCT
0.381
AAACAGTTGAC
0.306
GAGCAGCTGGG
0.397
CAACAGATGCT
0.374
CAGCAGCTGGG
0.398
GAGCAGCTGGC
0.294
ACACAGCTGGC
0.349
GAACACTTGTC
0.398
AAACAGCTGGG
0.344
CACCAGCTGGC
0.334
CAACAGCTGAG
0.329
CAACAGCTGGT
0.294
GGACAGCTGGC
0.295
CAACAGCTGTC
0.06
CAGCAGCTGAC
0.294
GCACAGCTGTC
0.306
GGACAGCTGTG
0.381
CATCAGCTGTC
0.374
CAGCAGCTGCT
0.329
AAGCAGCTGCT
0.336
CAGCAGCTGTC
0.294
GGACAGCTGCT
0.329
CCACAGCTGGC
0.329
CAGCAGTTGGC
0.329
CACCAGCTGAT
0.397
AGACAGCTGCC
0.329
CAACAGCTGGG
0.329
GGGCAGCTGTC
0.329
GAACAGTTGTT
0.295
AAACAACTGTT
0.334
GAACAGATGCT
0.373
GCACAGCTGGT
0.374
CCGCAGCTGTC
0.365
AAACAACTGGT
0.344
GCACAGCTGTC
0.306
GGACAGCTGTG
0.381
AGACAGCTGTC
0.306
AGACAGCTGTC
0.306
CAACAGCTGGT
0.294
CAGCAGCTGCT
0.329
TAGCAGCTGTC
0.329
GGACAGCTGCT
0.329
AAGCAGCTGCT
0.336
AAACACCTGGC
0.406
CAACAGCTGCC
0.167
GGGCAGCTGTT
0.374
CAACAACTGCC
0.295
CCACAGCTGGC
0.329
CAGCAGCTGGG
0.398
GAACAGCTGGC
0.124
TGACAGCTGCC
0.374
GAACAGATGAT
0.344
CAGCAGCTGCT
0.329
CAGCAGCTGCT
0.329
CAACAGGTGGC
0.336
GAACAGTTGTT
0.295
AAGCAGTTGTT
0.399
GGACAGCTGGT
0.329
AACCAGCTGTC
0.338
CAACAGCTGTC
0.06
AGACAGCTGTT
0.334
GCACAGTTGCC
0.397
AAGCAGCTGCC
0.313
GGACAGCTGCC
0.295
CAACAGCTGTG
0.306
GCACAGCTGTT
0.334
GAGCAGCTGCT
0.329
CAGCAGCTGCT
0.329
CAACAACTGCC
0.295
TAACAGCTGGC
0.306
TAACAGCTGTC
0.294
AGACAGCTGTT
0.334
CAGCAGTTGCC
0.329
GCACAGTTGAC
0.374
AGACAGCTGTC
0.306
TGACAGCTGTC
0.334
CAGCAGCTGAG
0.381
CAGCAGCTGGC
0.294
CAACAGTTGGC
0.294
yes