prim_db	prim_id	prim_alt	sec_db	sec_id	sec_alt	trim_left	trim_right	red_db	red_id	red_alt	E-value	gap	orient	count	total	adj_p-value	p-value
dreme.xml	TTATCW	DREME	JASPAR_CORE_2014	MA0456.1	opa	0	0	.	.	.	5.78e+00	24	1	4	68	8.64e-07	7.77e-06
dreme.xml	TTATCW	DREME	JASPAR_CORE_2014	MA0035.3	Gata1	0	0	.	.	.	6.40e+00	53	1	3	22	9.50e-07	8.55e-06
dreme.xml	TTATCW	DREME	dreme.xml	MCRCCCW	DREME	0	0	.	.	.	6.52e+00	18	2	6	265	9.41e-07	8.47e-06
dreme.xml	TTATCW	DREME	meme.xml	3	MEME	0	0	.	.	.	8.19e+00	27	3	2	3	1.40e-06	1.26e-05
dreme.xml	TTATCW	DREME	JASPAR_CORE_2014	MA0050.2	IRF1	3	0	.	.	.	8.48e+00	68	6	4	37	1.33e-06	1.19e-05
dreme.xml	TTATCW	DREME	meme.xml	1	MEME	0	2	.	.	.	8.52e+00	24	7	8	289	1.26e-06	1.13e-05
dreme.xml	TTATCW	DREME	meme.xml	1	MEME	0	2	.	.	.	8.52e+00	15	3	6	289	1.73e-06	1.55e-05
dreme.xml	TTATCW	DREME	JASPAR_CORE_2014	MA0514.1	Sox3	0	0	.	.	.	9.16e+00	84	4	5	82	1.35e-06	1.22e-05
dreme.xml	TTATCW	DREME	JASPAR_CORE_2014	MA0514.1	Sox3	0	0	.	.	.	9.16e+00	84	1	4	82	1.72e-06	1.55e-05
##
# Detailed descriptions of columns in this file:
#
# prim_db:	The name of the database (file name) that contains the primary motif.
# prim_id:	A name for the primary motif that is unique in the motif database file.
# prim_alt:	An alternate name of the primary motif that may be provided
#		in the motif database file.
# sec_db:	The name of the database (file name) that contains the secondary motif.
# sec_id:	A name for the motif that is unique in the motif database file.
# sec_alt:	An alternate name of the secondary motif that may be provided
#		in the motif database file.
# trim_left:	Number of positions trimmed from left of secondary motif
# trim_right:	Number of positions trimmed from right of secondary motif
# If the next three fields are not blank, the motif is redundant with a more significant ('parent') motif.
# red_db:	The database (file name) that contains the parent motif.
# red_id:	A name for the parent motif that is unique in the motif database file.
# red_alt:	An alternate name of the parent motif that may be provided
#		in the motif database file.
# E-value:	The expected number motifs that would have least one
#		spacing as enriched as the best spacing for this secondary.
#		The E-value is the best spacing p-value multiplied by the number of motifs in the
#		input database(s).
# gap:		The distance between the edge of the primary and the (trimmed) secondary motif.
# orient:	The (combination) of quadrants for which occurrences
#		of this spacing are combined.
# count:	The number of occurrences of the secondary motif with the
#		given spacing and orientation to the primary motif.
# total:	The total number of occurrences of the secondary motif within the
#		margins around the best primary motif occurrence.
# adj_p-value:	The p-value of the gap and orientation, adjusted for
#		nine combinations of quadrants times the number of gaps tested
#		(as controlled by the -range switch).
# p-value:	The p-value of the gap and orientation adjusted only for the number of gaps tested.
