# DREME 4.11.1
#     command: dreme -v 1 -oc memechip_example_output_files/dreme_out -png -dna -p memechip_example_output_files/seqs-centered -n memechip_example_output_files/seqs-shuffled
#   positives: 812 from memechip_example_output_files/seqs-centered (Wed Apr 27 15:00:12 AEST 2016)
#   negatives: 812 from memechip_example_output_files/seqs-shuffled (Wed Apr 27 15:00:12 AEST 2016)
#        host: fos-sciit-102
#        when: Wed Apr 27 15:08:40 AEST 2016

MEME version 4.11.1

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.246 C 0.254 G 0.250 T 0.251


MOTIF MCRCCCW DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST     MCRCCCW    WGGGYGK        369         76   1.8e-063   5.8e-059
#          ACACCCT    AGGGTGT         87         13   1.1e-015   3.6e-011
#          ACACCCA    TGGGTGT         93         16   1.6e-015   5.2e-011
#          ACGCCCT    AGGGCGT         43          1   1.5e-012   4.8e-008
#          CCACCCA    TGGGTGG         67         16   3.0e-009   9.8e-005
#          ACGCCCA    TGGGCGT         38          4   2.0e-008   6.5e-004
#          CCGCCCT    AGGGCGG         31          3   3.0e-007   9.9e-003
#          CCGCCCA    TGGGCGG         21          3   1.3e-004   4.1e+000
#          CCACCCT    AGGGTGG         49         26   4.4e-003   1.5e+002

letter-probability matrix: alength= 4 w= 7 nsites= 443 E= 5.8e-059
0.613995 0.386005 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.697517 0.000000 0.302483 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.503386 0.000000 0.000000 0.496614


MOTIF TTATCW DREME

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST      TTATCW     WGATAA        253         42   1.8e-045   5.7e-041
#           TTATCT     AGATAA        154         25   1.2e-026   3.7e-022
#           TTATCA     TGATAA        114         17   1.8e-020   5.6e-016

letter-probability matrix: alength= 4 w= 6 nsites= 281 E= 5.7e-041
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.430605 0.000000 0.000000 0.569395


# Stopping reason: E-value threshold exceeded
#    Running time: 41.54 seconds
