# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/megalodon, last modified Mon May 29 08:51:08 2023
# ------------------------------------------------

package:
  name: megalodon
  version: 2.4.1
source:
  sha256: c67de21120407258019498cd704892573f687576edbb3d4d4c5bb4b48aa56e7c
  url: https://github.com/nanoporetech/megalodon/archive/2.4.1.tar.gz
build:
  entry_points:
    - megalodon = megalodon.__main__:_main
    - megalodon_extras = megalodon_extras.__main__:_main
  number: '2'
  script: /opt/mambaforge/envs/bioconda/conda-bld/megalodon_1685368342947/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/bin/python
    -m pip install . -vv
  string: py310he07d9a1_2
requirements:
  build:
    - ca-certificates 2023.5.7 h8857fd0_0
    - cctools_osx-64 973.0.1 h48a5a9d_13
    - clang 15.0.7 h694c41f_2
    - clang-15 15.0.7 default_hdb78580_2
    - clang_osx-64 15.0.7 h03d6864_3
    - clangxx 15.0.7 default_hdb78580_2
    - compiler-rt 15.0.7 he1888fc_1
    - compiler-rt_osx-64 15.0.7 he1888fc_1
    - icu 72.1 h7336db1_0
    - ld64_osx-64 609 h8ce0179_13
    - libclang-cpp15 15.0.7 default_hdb78580_2
    - libcxx 16.0.4 hd57cbcb_0
    - libiconv 1.17 hac89ed1_0
    - libllvm15 15.0.7 he4b1e75_2
    - libxml2 2.11.4 hd95e348_0
    - libzlib 1.2.13 hfd90126_4
    - llvm-tools 15.0.7 he4b1e75_2
    - openssl 3.1.0 h8a1eda9_3
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.2 hbc0c0cd_6
  host:
    - bzip2 1.0.8 h0d85af4_4
    - ca-certificates 2023.5.7 h8857fd0_0
    - cython 0.29.35 py310h9e9d8ca_0
    - libblas 3.9.0 16_osx64_openblas
    - libcblas 3.9.0 16_osx64_openblas
    - libcxx 16.0.4 hd57cbcb_0
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 11_3_0_h97931a8_31
    - libgfortran5 12.2.0 he409387_31
    - liblapack 3.9.0 16_osx64_openblas
    - libopenblas 0.3.21 openmp_h429af6e_3
    - libsqlite 3.42.0 h58db7d2_0
    - libzlib 1.2.13 hfd90126_4
    - llvm-openmp 16.0.4 hff08bdf_0
    - ncurses 6.3 h96cf925_1
    - numpy 1.24.3 py310h7451ae0_0
    - openssl 3.1.0 h8a1eda9_3
    - pip 23.1.2 pyhd8ed1ab_0
    - python 3.10.11 he7542f4_0_cpython
    - python_abi 3.10 3_cp310
    - readline 8.2 h9e318b2_1
    - setuptools 67.7.2 pyhd8ed1ab_0
    - tk 8.6.12 h5dbffcc_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xz 5.2.6 h775f41a_0
  run:
    - h5py >=2.2.1
    - mappy >=2.16
    - numpy >=1.24.3,<2.0a0
    - numpy >=1.9.0
    - ont-fast5-api >=3.2
    - pysam >=0.15
    - python >=3.10,<3.11.0a0
    - python_abi 3.10.* *_cp310
    - scikit-learn
    - scipy >=1.1.0
    - seaborn
    - setuptools
    - tqdm
test:
  commands:
    - megalodon --help
    - megalodon_extras --help
  imports:
    - megalodon
about:
  dev_url: https://github.com/nanoporetech/megalodon
  doc_url: https://nanoporetech.github.io/megalodon/index.html
  home: https://github.com/nanoporetech/megalodon
  license: Mozilla Public License 2.0
  license_family: OTHER
  license_file: LICENCE.txt
  summary: Nanopore modified base and sequence variant detection.
extra:
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - marcus1487
