# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /Users/distiller/project/recipes/medaka, last modified Mon Feb 18 12:32:05 2019
# ------------------------------------------------

package:
    name: medaka
    version: 0.5.2
source:
    sha256: 42f5513deab90dd4c0982dcb27c9dc9da3246f72eb9796d54fee5e7b6b2a90a6
    url: https://pypi.io/packages/source/m/medaka/medaka-0.5.2.tar.gz
build:
    entry_points:
        - medaka = medaka.medaka:main
        - medaka_counts = medaka.medaka_counts:main
        - medaka_data_path = medaka.common:print_data_path
        - medaka_version_report = medaka:report_binaries
    number: '0'
    string: py36h6e834b3_0
requirements:
    build:
        - cctools 895 h7512d6f_0
        - clang 4.0.1 h662ec87_0
        - clang_osx-64 4.0.1 h1ce6c1d_11
        - compiler-rt 4.0.1 h5487866_0
        - ld64 274.2 h7c2db76_0
        - libcxx 4.0.1 h579ed51_0
        - libcxxabi 4.0.1 hebd6815_0
        - llvm 4.0.1 hc748206_0
        - llvm-lto-tapi 4.0.1 h6701bc3_0
    host:
        - _tflow_select 2.3.0 mkl
        - absl-py 0.7.0 py36_1000
        - astor 0.7.1 py_0
        - bcftools 1.3.1 ha441bb4_4
        - biopython 1.73 py36h1de35cc_0
        - blas 1.1 openblas
        - bzip2 1.0.6 h1de35cc_1002
        - c-ares 1.15.0 h1de35cc_1001
        - ca-certificates 2018.11.29 ha4d7672_0
        - certifi 2018.11.29 py36_1000
        - cffi 1.12.1 py36h342bebf_0
        - curl 7.64.0 heae2a1f_0
        - gast 0.2.1.post0 py_0
        - grpcio 1.16.0 py36h9011c5e_1000
        - h5py 2.7.1 py36_2
        - hdf5 1.10.1 2
        - htslib 1.3.1 1
        - intervaltree 3.0.2 py_0
        - keras 2.2.4 0
        - keras-applications 1.0.6 py36_0
        - keras-base 2.2.4 py36_0
        - keras-preprocessing 1.0.5 py_0
        - krb5 1.16.3 h24a3359_1000
        - libcurl 7.64.0 h76de61e_0
        - libcxx 7.0.0 h2d50403_2
        - libdeflate 1.0 h1de35cc_1
        - libedit 3.1.20170329 hcfe32e1_1001
        - libffi 3.2.1 h0a44026_1005
        - libgfortran 3.0.1 h93005f0_2
        - libprotobuf 3.6.1 hd9629dc_1000
        - libssh2 1.8.0 hf30b1f0_1003
        - llvm-meta 7.0.0 0
        - markdown 2.6.11 py_0
        - ncurses 6.1 h0a44026_1002
        - numpy 1.16.1 py36_blas_openblash486cb9f_0
        - openblas 0.3.3 hdc02c5d_1001
        - openssl 1.0.2p h1de35cc_1002
        - pip 19.0.2 py36_0
        - protobuf 3.6.1 py36h0a44026_1001
        - pycparser 2.19 py_0
        - pysam 0.10.0 py36_5
        - python 3.6.7 h4a56312_1001
        - pyyaml 3.13 py36h1de35cc_1001
        - readline 7.0 hcfe32e1_1001
        - samtools 1.3.1 5
        - scipy 1.2.1 py36_blas_openblash486cb9f_0
        - setuptools 40.8.0 py36_0
        - six 1.12.0 py36_1000
        - sortedcontainers 2.1.0 py_0
        - sqlite 3.26.0 h1765d9f_1000
        - tensorboard 1.12.0 py36_1000
        - tensorflow 1.12.0 mkl_py36h2b2bbaf_0
        - tensorflow-base 1.12.0 mkl_py36h70e0e9a_0
        - termcolor 1.1.0 py_2
        - tk 8.6.9 ha441bb4_1000
        - werkzeug 0.14.1 py_0
        - wheel 0.33.0 py36_0
        - xz 5.2.4 h1de35cc_1001
        - yaml 0.1.7 h1de35cc_1001
        - zlib 1.2.11 h1de35cc_1004
    run:
        - bcftools ==1.3.1
        - biopython
        - bzip2 >=1.0.6,<2.0a0
        - bzip2 >=1.0.6,<2.0a0
        - cffi
        - h5py ==2.7.1
        - htslib >=1.3.1,<1.4.0a0
        - intervaltree >=3.0.0
        - keras ==2.2.4
        - libdeflate >=1.0,<1.1.0a0
        - minimap2 ==2.11
        - numpy ==1.16.1
        - pysam
        - python >=3.6,<3.7.0a0
        - samtools ==1.3.1
        - tensorflow ==1.12.0
        - xz >=5.2.4,<5.3.0a0
        - xz >=5.2.4,<5.3.0a0
        - zlib >=1.2.11,<1.3.0a0
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - medaka --help
        - medaka consensus --help
        - medaka_data_path
        - medaka_version_report
    imports:
        - medaka
about:
    dev_url: https://github.com/nanoporetech/medaka
    doc_url: https://nanoporetech.github.io/medaka/index.html
    home: https://github.com/nanoporetech/medaka
    license: Mozilla Public License 2.0
    license_family: OTHER
    license_file: LICENSE.md
    summary: Neural network sequence error correction.
extra:
    copy_test_source_files: true
    final: true
    recipe-maintainers:
        - cjw85
