# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/maker, last modified Thu Mar 25 14:02:35 2021
# ------------------------------------------------

package:
  name: maker
  version: 3.01.03
source:
  patches:
    - mpi_init.patch
    - repeatmasker_check.patch
  sha256: f36cc7ef584c215955a4d9fdd46287a49f7508bbe59c6fe78d50e0c6e99192ae
  url: http://yandell.topaz.genetics.utah.edu/maker_downloads/static/maker-3.01.03.tgz
build:
  number: '1'
  string: pl5262h40483fd_1
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_20
    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcxx 11.1.0 habf9029_0
    - libllvm11 11.1.0 hd011deb_0
    - llvm-tools 11.1.0 hd011deb_0
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
    - atk-1.0 2.36.0 he69c4ee_4
    - c-compiler 1.1.3 h35c211d_0
    - ca-certificates 2020.12.5 h033912b_0
    - cairo 1.16.0 he43a7df_1008
    - cctools 949.0.1 hd9211c8_20
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    - clang 11.1.0 h694c41f_0
    - clang-11 11.1.0 default_he082bbe_0
    - clang_osx-64 11.1.0 hb91bd55_0
    - clangxx 11.1.0 default_he082bbe_0
    - clangxx_osx-64 11.1.0 h7e1b574_0
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - compilers 1.1.3 h694c41f_0
    - cxx-compiler 1.1.3 h926bf3e_0
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    - font-ttf-source-code-pro 2.030 hab24e00_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 hd23ceaa_1004
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - fortran-compiler 1.1.3 h6818c3e_0
    - freetype 2.10.4 h4cff582_1
    - fribidi 1.0.10 hbcb3906_0
    - gdk-pixbuf 2.42.4 h2e6141f_2
    - gettext 0.19.8.1 h7937167_1005
    - gfortran_impl_osx-64 9.3.0 h9cc0e5e_20
    - gfortran_osx-64 9.3.0 h18f7dce_14
    - giflib 5.2.1 hbcb3906_2
    - gmp 6.2.1 h2e338ed_0
    - graphite2 1.3.13 h2e338ed_1001
    - graphviz 2.47.0 ha2e93d9_0
    - gtk2 2.24.33 h55c0dba_0
    - gts 0.7.6 hccb3bdf_2
    - harfbuzz 2.8.0 h159f659_1
    - icu 68.1 h74dc148_0
    - isl 0.22.1 hb1e8313_2
    - jpeg 9d hbcb3906_0
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    - ld64 530 hd2e7500_20
    - ld64_osx-64 530 he8994da_20
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_0
    - libcxx 11.1.0 habf9029_0
    - libdb 6.2.32 h046ec9c_0
    - libedit 3.1.20191231 h0678c8f_2
    - libffi 3.3 h046ec9c_2
    - libgd 2.3.0 h55673e3_1
    - libgfortran 5.0.0 9_3_0_h6c81a4c_20
    - libgfortran-devel_osx-64 9.3.0 h6c81a4c_20
    - libgfortran5 9.3.0 h6c81a4c_20
    - libglib 2.68.0 hd556434_2
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    - libllvm11 11.1.0 hd011deb_0
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    - libpq 11.5 h31a01ba_2
    - librsvg 2.50.3 hd4300c0_1
    - libtiff 4.2.0 h355d032_0
    - libtool 2.4.6 h2e338ed_1007
    - libwebp 1.2.0 h1648767_0
    - libwebp-base 1.2.0 h0d85af4_2
    - libxml2 2.9.10 h802ca4f_3
    - libxslt 1.1.33 h5739fc3_2
    - llvm-openmp 11.1.0 hda6cdc1_0
    - llvm-tools 11.1.0 hd011deb_0
    - lz4-c 1.9.3 h046ec9c_0
    - make 4.3 h22f3db7_1
    - mpc 1.1.0 ha57cd0f_1009
    - mpfr 4.0.2 h72d8aaf_1
    - mpi 1.0 mpich
    - mpich 3.4.1 hd33e60e_104
    - ncurses 6.2 h2e338ed_4
    - openssl 1.1.1k h0d85af4_0
    - pango 1.42.4 ha86e081_5
    - pcre 8.44 hb1e8313_0
    - perl 5.26.2 hbcb3906_1008
    - perl-aceperl 1.92 pl526_2
    - perl-acme-damn 0.08 pl526h04f5b5a_3
    - perl-algorithm-munkres 0.08 pl526_1
    - perl-apache-test 1.40 pl526_1
    - perl-app-cpanminus 1.7044 pl526_1
    - perl-appconfig 1.71 pl526_1
    - perl-array-compare 3.0.1 pl526_1
    - perl-attribute-handlers 0.96 pl526_2
    - perl-autoloader 5.74 pl526_2
    - perl-base 2.23 pl526_1
    - perl-bio-phylo 0.58 pl526_2
    - perl-bioperl-core 1.007002 pl526_2
    - perl-bit-vector 7.4 pl526_2
    - perl-business-isbn 3.004 pl526_0
    - perl-business-isbn-data 20140910.003 pl526_0
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    - perl-constant 1.33 pl526_1
    - perl-convert-binary-c 0.78 pl526h04f5b5a_3
    - perl-convert-binhex 1.125 pl526_1
    - perl-crypt-rc4 2.02 pl526_1
    - perl-data-dumper 2.173 pl526_0
    - perl-data-optlist 0.110 pl526_2
    - perl-data-stag 0.14 pl526_1
    - perl-date-format 2.30 pl526_2
    - perl-db-file 1.855 pl526h0b31af3_0
    - perl-dbd-pg 3.8.1 pl526h1de35cc_0
    - perl-dbd-sqlite 1.64 pl526h01d97ff_0
    - perl-dbi 1.642 pl526_0
    - perl-devel-globaldestruction 0.14 pl526_0
    - perl-devel-overloadinfo 0.005 pl526_0
    - perl-devel-stacktrace 2.04 pl526_0
    - perl-devel-symdump 2.18 pl526_1
    - perl-digest-hmac 1.03 pl526_3
    - perl-digest-md5 2.55 pl526_0
    - perl-digest-perl-md5 1.9 pl526_1
    - perl-digest-sha1 2.13 pl526h04f5b5a_1
    - perl-dist-checkconflicts 0.11 pl526_2
    - perl-dynaloader 1.25 pl526_1
    - perl-email-date-format 1.005 pl526_2
    - perl-encode 2.88 pl526_1
    - perl-encode-locale 1.05 pl526_6
    - perl-error 0.17027 pl526_1
    - perl-eval-closure 0.14 pl526h04f5b5a_4
    - perl-exporter 5.72 pl526_1
    - perl-exporter-tiny 1.002001 pl526_0
    - perl-extutils-makemaker 7.36 pl526_1
    - perl-file-listing 6.04 pl526_1
    - perl-file-path 2.16 pl526_0
    - perl-file-sharedir-install 0.13 pl526_0
    - perl-file-slurp-tiny 0.004 pl526_1
    - perl-file-temp 0.2304 pl526_2
    - perl-file-which 1.23 pl526_0
    - perl-font-afm 1.20 pl526_2
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    - perl-forks 0.36 pl526_4
    - perl-gd 2.68 pl526he941832_0
    - perl-getopt-long 2.50 pl526_1
    - perl-graph 0.9704 pl526_1
    - perl-graphviz 2.24 pl526h734ff71_0
    - perl-html-element-extended 1.18 pl526_1
    - perl-html-entities-numbered 0.04 pl526_1
    - perl-html-formatter 2.16 pl526_0
    - perl-html-parser 3.72 pl526h04f5b5a_5
    - perl-html-tableextract 2.13 pl526_2
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    - perl-html-tidy 1.60 pl526_0
    - perl-html-tree 5.07 pl526_1
    - perl-html-treebuilder-xpath 0.14 pl526_1
    - perl-http-cookies 6.04 pl526_0
    - perl-http-daemon 6.01 pl526_1
    - perl-http-date 6.02 pl526_3
    - perl-http-message 6.18 pl526_0
    - perl-http-negotiate 6.01 pl526_3
    - perl-image-info 1.38 pl526_1
    - perl-image-size 3.300 pl526_2
    - perl-inline 0.83 pl526_0
    - perl-inline-c 0.78 pl526h1de35cc_1
    - perl-io-all 0.87 pl526_0
    - perl-io-html 1.001 pl526_2
    - perl-io-prompt 0.997004 pl526_2
    - perl-io-sessiondata 1.03 pl526_1
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    - perl-io-stringy 2.111 pl526_1
    - perl-io-tty 1.12 pl526_1
    - perl-ipc-run 20180523.0 pl526_0
    - perl-ipc-sharelite 0.17 pl526h04f5b5a_1
    - perl-jcode 2.07 pl526_2
    - perl-json 4.02 pl526_0
    - perl-json-xs 2.34 pl526h04f5b5a_3
    - perl-lib 0.63 pl526_1
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    - perl-libxml-perl 0.08 pl526_2
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    - perl-lwp-mediatypes 6.04 pl526_0
    - perl-lwp-protocol-https 6.07 pl526_4
    - perl-lwp-simple 6.15 pl526h470a237_4
    - perl-mailtools 2.21 pl526_0
    - perl-math-cdf 0.1 pl526h1de35cc_5
    - perl-math-derivative 1.01 pl526_0
    - perl-math-random 0.72 pl526h1de35cc_2
    - perl-math-spline 0.02 pl526_2
    - perl-mime-base64 3.15 pl526_1
    - perl-mime-lite 3.030 pl526_1
    - perl-mime-tools 5.508 pl526_1
    - perl-mime-types 2.17 pl526_0
    - perl-mldbm 2.05 pl526_1
    - perl-module-implementation 0.09 pl526_2
    - perl-module-runtime 0.016 pl526_1
    - perl-module-runtime-conflicts 0.003 pl526_0
    - perl-moo 2.003004 pl526_0
    - perl-moose 2.2011 pl526h0a44026_1
    - perl-mozilla-ca 20180117 pl526_1
    - perl-mro-compat 0.13 pl526_0
    - perl-net-http 6.19 pl526_0
    - perl-net-ssleay 1.88 pl526hb1dc21d_0
    - perl-ntlm 1.09 pl526_4
    - perl-ole-storage_lite 0.19 pl526_3
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    - perl-package-stash 0.38 pl526h0a44026_1
    - perl-package-stash-xs 0.28 pl526h0a44026_1
    - perl-params-util 1.07 pl526h04f5b5a_4
    - perl-parent 0.236 pl526_1
    - perl-parse-recdescent 1.967015 pl526_0
    - perl-pathtools 3.75 pl526h1de35cc_1
    - perl-pdf-api2 2.035 pl526_0
    - perl-pegex 0.61 pl526_1
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    - perl-perlio-gzip 0.20 pl526ha441bb4_1
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    - perl-socket 2.027 pl526_1
    - perl-sort-naturally 1.03 pl526_2
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    - perl-spreadsheet-writeexcel 2.40 pl526_2
    - perl-statistics-descriptive 3.0702 pl526_0
    - perl-storable 3.15 pl526h1de35cc_0
    - perl-sub-exporter 0.987 pl526_2
    - perl-sub-exporter-progressive 0.001013 pl526_0
    - perl-sub-identify 0.14 pl526h1de35cc_0
    - perl-sub-install 0.928 pl526_2
    - perl-sub-name 0.21 pl526_1
    - perl-sub-quote 2.006003 pl526_1
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    - perl-svg-graph 0.02 pl526_3
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    - perl-test-leaktrace 0.16 pl526h1de35cc_2
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    - perl-want 0.29 pl526_1
    - perl-www-robotrules 6.02 pl526_3
    - perl-xml-dom 1.46 pl526_0
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    - perl-xml-filter-buffertext 1.01 pl526_2
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    - perl-xml-namespacesupport 1.12 pl526_0
    - perl-xml-parser 2.44_01 pl526hb1d6bea_1002
    - perl-xml-regexp 0.04 pl526_2
    - perl-xml-sax 1.02 pl526_0
    - perl-xml-sax-base 1.09 pl526_0
    - perl-xml-sax-expat 0.51 pl526_3
    - perl-xml-sax-writer 0.57 pl526_0
    - perl-xml-simple 2.25 pl526_1
    - perl-xml-twig 3.52 pl526_2
    - perl-xml-writer 0.625 pl526_2
    - perl-xml-xpath 1.44 pl526_0
    - perl-xml-xpathengine 0.14 pl526_2
    - perl-xsloader 0.24 pl526_0
    - perl-yaml 1.29 pl526_0
    - perl-yaml-libyaml 0.66 pl526_1
    - pixman 0.40.0 hbcb3906_0
    - postgresql 11.5 h26bc10f_2
    - readline 8.1 h05e3726_0
    - tapi 1100.0.11 h9ce4665_0
    - tidyp 1.04 h0b31af3_2
    - tk 8.6.10 h0419947_1
    - tzcode 2021a h0d85af4_1
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
    - zstd 1.4.9 h582d3a0_0
  run:
    - augustus >=3.2.3
    - blast 2.9.0.*
    - evidencemodeler
    - exonerate
    - mpich >=3.4.1,<4.0a0
    - perl >=5.26.2,<5.26.3.0a0
    - perl-bioperl-core >=1.007002
    - perl-bit-vector
    - perl-dbd-pg
    - perl-dbd-sqlite
    - perl-dbi
    - perl-forks
    - perl-inline-c >=0.78
    - perl-io-all
    - perl-io-prompt
    - perl-perl-unsafe-signals
    - perl-perlio-gzip
    - postgresql
    - repeatmasker >=4.1.1
    - rmblast 2.9.0.*
    - snap
    - snoscan
    - trnascan-se
test:
  commands:
    - maker --version
about:
  home: http://www.yandell-lab.org/software/maker.html
  license: GPL3
  license_file: LICENSE
  summary: MAKER is a portable and easily configurable genome annotation pipeline.
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:maker
    - usegalaxy-eu:maker
