# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /Users/distiller/project/recipes/machina, last modified Mon Mar 22 12:12:36 2021
# ------------------------------------------------

package:
    name: machina
    version: '1.2'
source:
    -   sha256: 2ba9116659140a28b070a5878f1956fdca2a1df5200d69c483200a22fe908350
        url: https://github.com/raphael-group/machina/archive/v1.2.zip
    -   sha256: 1d58586f9a33ac7035f51f6a04707248218f70bddbec78cb83f11c986ac652cd
        url: https://packages.gurobi.com/9.0/gurobi9.0.2_mac64.pkg
build:
    number: '2'
    string: h7eed37d_2
requirements:
    build:
        - bzip2 1.0.8 hc929b4f_4
        - c-ares 1.17.1 h0d85af4_1
        - ca-certificates 2020.12.5 h033912b_0
        - cctools 949.0.1 h22b1bf0_0
        - cctools_osx-64 949.0.1 h5ba7a2e_0
        - clang 9.0.1 default_hf57f61e_0
        - clang_osx-64 9.0.1 h05bbb7f_2
        - clangxx 9.0.1 default_hf57f61e_0
        - clangxx_osx-64 9.0.1 h05bbb7f_2
        - cmake 3.19.6 h641592c_0
        - compiler-rt 9.0.1 h6a512c6_3
        - compiler-rt_osx-64 9.0.1 h99342c6_3
        - expat 2.2.10 h1c7c35f_0
        - krb5 1.17.2 h60d9502_0
        - ld64 530 0
        - ld64_osx-64 530 h3c32e8a_0
        - libcurl 7.75.0 h8ef9fac_0
        - libcxx 11.1.0 habf9029_0
        - libedit 3.1.20191231 h0678c8f_2
        - libev 4.33 haf1e3a3_1
        - libffi 3.3 h046ec9c_2
        - libllvm9 9.0.1 h223d4b2_3
        - libnghttp2 1.43.0 h07e645a_0
        - libssh2 1.9.0 h52ee1ee_6
        - libuv 1.41.0 hbcf498f_0
        - llvm-tools 9.0.1 h223d4b2_3
        - lz4-c 1.9.3 h046ec9c_0
        - ncurses 6.2 h2e338ed_4
        - openssl 1.1.1j hbcf498f_0
        - python 3.9.2 h2502468_0_cpython
        - readline 8.0 h0678c8f_2
        - rhash 1.4.1 h35c211d_0
        - sqlite 3.34.0 h17101e1_0
        - tapi 1000.10.8 h879752b_4
        - tk 8.6.10 h0419947_1
        - tzdata 2021a he74cb21_0
        - xz 5.2.5 haf1e3a3_1
        - zlib 1.2.11 h7795811_1010
        - zstd 1.4.9 h582d3a0_0
    host:
        - boost-cpp 1.70.0 hef959ae_3
        - bzip2 1.0.8 hc929b4f_4
        - coincbc 2.10.5 he509fd4_1
        - glpk 4.65 h343d7f2_1003
        - gmp 6.2.1 h2e338ed_0
        - icu 67.1 hb1e8313_0
        - lemon 1.3.1 h1fadc39_3
        - libblas 3.9.0 8_openblas
        - libcblas 3.9.0 8_openblas
        - libcxx 11.1.0 habf9029_0
        - libgfortran 5.0.0 9_3_0_h6c81a4c_20
        - libgfortran5 9.3.0 h6c81a4c_20
        - liblapack 3.9.0 8_openblas
        - libopenblas 0.3.12 openmp_h54245bb_1
        - llvm-openmp 11.1.0 hda6cdc1_0
        - lz4-c 1.9.3 h046ec9c_0
        - xz 5.2.5 haf1e3a3_1
        - zlib 1.2.11 h7795811_1010
        - zstd 1.4.9 h582d3a0_0
    run:
        - boost-cpp >=1.70.0,<1.70.1.0a0
        - glpk >=4.65,<4.66.0a0
        - lemon >=1.3.1,<1.3.2.0a0
        - libcxx >=9.0.1
        - zlib >=1.2.11,<1.3.0a0
test:
    commands:
        - $PREFIX/bin/cluster --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/generatemigrationtrees --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/generatemutationtrees --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_tr --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_ti --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/pmh_sankoff --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/ms --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/visualizeclonetree --help || [[ "$?" == 1 ]]
        - $PREFIX/bin/visualizemigrationgraph --help || [[ "$?" == 1 ]]
about:
    description: 'MACHINA is a computational framework for inferring migration patterns

        between a primary tumor and metastases using DNA sequencing data.

        '
    home: https://github.com/raphael-group/machina
    license: BSD-3
    summary: Metastatic And Clonal History INtegrative Analysis
extra:
    copy_test_source_files: true
    final: true
