# Homer Update File
#
# This file is updated from the Homer website and contains information about data available for
# use with the program.
#
# This file has been further modified by the local update script
#
# Each section has the same format, which is <tab> separated values specifying:
# package name <tab> version <tab> description <tab> url <tab> optional parameters (, separated)
#

SOFTWARE
homer	v4.9.1	Code/Executables, ontologies, motifs for HOMER	http://homer.ucsd.edu/homer/data/software/homer.v4.9.1.zip	./	

ORGANISMS
anemone	v5.10	Nematostella vectensis (anemone) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/anemone.v5.10.zip	data/accession/	45351,NCBI Gene
arabidopsis	v5.10	Arabidopsis thaliana (arabidopsis) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/arabidopsis.v5.10.zip	data/accession/	3702,NCBI Gene
ascomycetes	v5.10	Neurospora crassa (ascomycetes) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/ascomycetes.v5.10.zip	data/accession/	5141,NCBI Gene
bee	v5.10	Apis mellifera (bee) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/bee.v5.10.zip	data/accession/	7460,NCBI Gene
chicken	v5.10	Gallus gallus (chicken) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/chicken.v5.10.zip	data/accession/	9031,NCBI Gene
chlamy	v5.10	Chlamydomonas reinhardtii (chlamy) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/chlamy.v5.10.zip	data/accession/	3055,NCBI Gene
ciliate	v5.10	Tetrahymena thermophila (ciliate) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/ciliate.v5.10.zip	data/accession/	312017,NCBI Gene
ciona	v5.10	Ciona intestinalis (ciona) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/ciona.v5.10.zip	data/accession/	7719,NCBI Gene
corn	v5.10	Zea mays (corn) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/corn.v5.10.zip	data/accession/	45.8,NCBI Gene
cow	v5.4	Bos taurus (cow) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/cow.v5.4.zip	data/accession/	9913,NCBI Gene
diatom	v5.10	Phaeodactylum tricornutum (diatom) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/diatom.v5.10.zip	data/accession/	556484,NCBI Gene
dicty	v5.10	Dictyostelium discoideum (dicty) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/dicty.v5.10.zip	data/accession/	352472,NCBI Gene
dog	v5.10	Canis lupus familiaris (dog) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/dog.v5.10.zip	data/accession/	9615,NCBI Gene
fly	v5.10	Drosophila melanogaster (fly) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/fly.v5.10.zip	data/accession/	7227,NCBI Gene
frog	v5.10	Xenopus tropicalis (frog) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/frog.v5.10.zip	data/accession/	8364,NCBI Gene
fugu	v5.10	Takifugu rubripes (fugu) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/fugu.v5.10.zip	data/accession/	31033,NCBI Gene
human	v5.10	Homo sapiens (human) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/human.v5.10.zip	data/accession/	9606,NCBI Gene
hydra	v5.10	Hydra vulgaris (hydra) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/hydra.v5.10.zip	data/accession/	6087,NCBI Gene
laevis	v5.10	Xenopus laevis (laevis) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/laevis.v5.10.zip	data/accession/	8355,NCBI Gene
lamprey	v5.10	Petromyzon marinus (lamprey) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/lamprey.v5.10.zip	data/accession/	7757,NCBI Gene
mosquito	v5.10	Anopheles gambiae (mosquito) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/mosquito.v5.10.zip	data/accession/	180454,NCBI Gene
mouse	v5.10	Mus musculus (mouse) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/mouse.v5.10.zip	data/accession/	10090,NCBI Gene
mushroom	v5.10	Agaricus bisporus (mushroom) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/mushroom.v5.10.zip	data/accession/	5.8362,NCBI Gene
patens	v5.10	Physcomitrella patens (patens) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/patens.v5.10.zip	data/accession/	3218,NCBI Gene
pig	v5.10	Sus scrofa (pig) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/pig.v5.10.zip	data/accession/	9823,NCBI Gene
pombe	v5.10	Schizosaccharomyces pombe (pombe) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/pombe.v5.10.zip	data/accession/	284812,NCBI Gene
pseudonana	v5.10	Thalassiosira pseudonana (pseudonana) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/pseudonana.v5.10.zip	data/accession/	296543,NCBI Gene
rat	v5.10	Rattus norvegicus (rat) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/rat.v5.10.zip	data/accession/	10116,NCBI Gene
rhesus	v5.10	Macaca mulatta (rhesus) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/rhesus.v5.10.zip	data/accession/	9544,NCBI Gene
rice	v5.10	Oryza sativa (rice) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/rice.v5.10.zip	data/accession/	39947,NCBI Gene
seahare	v5.10	Aplysia californica (seahare) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/seahare.v5.10.zip	data/accession/	6500,NCBI Gene
selaginella	v5.10	Selaginella moellendorffii (selaginella) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/selaginella.v5.10.zip	data/accession/	88036,NCBI Gene
tomato	v5.10	Solanum lycopersicum (tomato) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/tomato.v5.10.zip	data/accession/	4081,NCBI Gene
urchin	v5.10	Strongylocentrotus purpuratus (urchin) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/urchin.v5.10.zip	data/accession/	7668,NCBI Gene
volvox	v5.10	Volvox carteri (volvox) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/volvox.v5.10.zip	data/accession/	3068,NCBI Gene
worm	v5.10	Caenorhabditis elegans (worm) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/worm.v5.10.zip	data/accession/	6239,NCBI Gene
yeast	v5.10	Saccharomyces cerevisiae (yeast) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/yeast.v5.10.zip	data/accession/	559292,NCBI Gene
zebrafinch	v5.10	Taeniopygia guttata (zebrafinch) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/zebrafinch.v5.10.zip	data/accession/	5.829,NCBI Gene
zebrafish	v5.10	Danio rerio (zebrafish) accession and ontology information	http://homer.ucsd.edu/homer/data/organisms/zebrafish.v5.10.zip	data/accession/	7955,NCBI Gene

PROMOTERS
arabidopsis	v5.0	Arabidopsis Ensembl Promoters (tair10)	http://homer.salk.edu/homer/data/promoters/arabidopsis.v5.0.zip	data/promoters/	arabidopsis,tair10,orf,-2000,2000
chicken	v5.5	chicken promoters (chicken)	http://homer.salk.edu/homer/data/promoters/chicken.v5.5.zip	data/promoters/	chicken,galGal4,refseq,-2000,2000
fly	v5.5	fly promoters (fly)	http://homer.salk.edu/homer/data/promoters/fly.v5.5.zip	data/promoters/	fly,dm3,refseq,-2000,2000
frog	v5.5	frog promoters (frog)	http://homer.salk.edu/homer/data/promoters/frog.v5.5.zip	data/promoters/	frog,xenTro2,refseq,-2000,2000
human	v5.5	human promoters (human)	http://homer.salk.edu/homer/data/promoters/human.v5.5.zip	data/promoters/	human,hg19,refseq,-2000,2000
mouse	v5.5	mouse promoters (mouse)	http://homer.salk.edu/homer/data/promoters/mouse.v5.5.zip	data/promoters/	mouse,mm9,refseq,-2000,2000
rat	v5.5	rat promoters (rat)	http://homer.salk.edu/homer/data/promoters/rat.v5.5.zip	data/promoters/	rat,rn5,refseq,-2000,2000
worm	v5.5	worm promoters (worm)	http://homer.salk.edu/homer/data/promoters/worm.v5.5.zip	data/promoters/	worm,ce10,refseq,-2000,2000
yeast	v5.5	yeast promoters (yeast)	http://homer.salk.edu/homer/data/promoters/yeast.v5.5.zip	data/promoters/	yeast,sacCer3,orf,-2000,2000
zebrafish	v5.5	zebrafish promoters (zebrafish)	http://homer.salk.edu/homer/data/promoters/zebrafish.v5.5.zip	data/promoters/	zebrafish,danRer7,refseq,-2000,2000

GENOMES
AGPv3	v5.10	corn genome and annotation (AGPv3)	http://homer.ucsd.edu/homer/data/genomes/AGPv3.v5.10.zip	data/genomes/AGPv3/	corn,default
anoGam1	v5.10	mosquito genome and annotation for UCSC anoGam1	http://homer.ucsd.edu/homer/data/genomes/anoGam1.v5.10.zip	data/genomes/anoGam1/	mosquito,default
apiMel2	v5.10	bee genome and annotation for UCSC apiMel2	http://homer.ucsd.edu/homer/data/genomes/apiMel2.v5.10.zip	data/genomes/apiMel2/	bee,default
aplCal1	v5.10	seahare genome and annotation for UCSC aplCal1	http://homer.ucsd.edu/homer/data/genomes/aplCal1.v5.10.zip	data/genomes/aplCal1/	seahare,default
canFam3	v5.10	dog genome and annotation for UCSC canFam3	http://homer.ucsd.edu/homer/data/genomes/canFam3.v5.10.zip	data/genomes/canFam3/	dog,default
ce10	v5.10	worm genome and annotation for UCSC ce10	http://homer.ucsd.edu/homer/data/genomes/ce10.v5.10.zip	data/genomes/ce10/	worm,default
ce11	v5.10	worm genome and annotation for UCSC ce11	http://homer.ucsd.edu/homer/data/genomes/ce11.v5.10.zip	data/genomes/ce11/	worm,default
ce6	v5.10	worm genome and annotation for UCSC ce6	http://homer.ucsd.edu/homer/data/genomes/ce6.v5.10.zip	data/genomes/ce6/	worm,default
ci2	v5.10	ciona genome and annotation for UCSC ci2	http://homer.ucsd.edu/homer/data/genomes/ci2.v5.10.zip	data/genomes/ci2/	ciona,default
corn.AGPv3	v5.10	corn genome and annotation (corn.AGPv3)	http://homer.ucsd.edu/homer/data/genomes/corn.AGPv3.v5.10.zip	data/genomes/corn.AGPv3/	corn,default
danRer10	v5.10	zebrafish genome and annotation for UCSC danRer10	http://homer.ucsd.edu/homer/data/genomes/danRer10.v5.10.zip	data/genomes/danRer10/	zebrafish,default
danRer7	v5.10	zebrafish genome and annotation for UCSC danRer7	http://homer.ucsd.edu/homer/data/genomes/danRer7.v5.10.zip	data/genomes/danRer7/	zebrafish,default
dm3	v5.10	fly genome and annotation for UCSC dm3	http://homer.ucsd.edu/homer/data/genomes/dm3.v5.10.zip	data/genomes/dm3/	fly,default
dm6	v5.10	fly genome and annotation for UCSC dm6	http://homer.ucsd.edu/homer/data/genomes/dm6.v5.10.zip	data/genomes/dm6/	fly,default
fr3	v5.10	fugu genome and annotation for UCSC fr3	http://homer.ucsd.edu/homer/data/genomes/fr3.v5.10.zip	data/genomes/fr3/	fugu,default
galGal4	v5.10	chicken genome and annotation for UCSC galGal4	http://homer.ucsd.edu/homer/data/genomes/galGal4.v5.10.zip	data/genomes/galGal4/	chicken,default
gorGor3	v5.10	human genome and annotation for UCSC gorGor3	http://homer.ucsd.edu/homer/data/genomes/gorGor3.v5.10.zip	data/genomes/gorGor3/	human,default
gorGor4	v5.10	human genome and annotation for UCSC gorGor4	http://homer.ucsd.edu/homer/data/genomes/gorGor4.v5.10.zip	data/genomes/gorGor4/	human,default
gorGor5	v5.10	human genome and annotation for UCSC gorGor5	http://homer.ucsd.edu/homer/data/genomes/gorGor5.v5.10.zip	data/genomes/gorGor5/	human,default
hg17	v5.10	human genome and annotation for UCSC hg17	http://homer.ucsd.edu/homer/data/genomes/hg17.v5.10.zip	data/genomes/hg17/	human,default
hg18	v5.10	human genome and annotation for UCSC hg18	http://homer.ucsd.edu/homer/data/genomes/hg18.v5.10.zip	data/genomes/hg18/	human,default
hg19	v5.10	human genome and annotation for UCSC hg19	http://homer.ucsd.edu/homer/data/genomes/hg19.v5.10.zip	data/genomes/hg19/	human,default
hg38	v5.10	human genome and annotation for UCSC hg38	http://homer.ucsd.edu/homer/data/genomes/hg38.v5.10.zip	data/genomes/hg38/	human,default
mm10	v5.10	mouse genome and annotation for UCSC mm10	http://homer.ucsd.edu/homer/data/genomes/mm10.v5.10.zip	data/genomes/mm10/	mouse,default
mm8	v5.10	mouse genome and annotation for UCSC mm8	http://homer.ucsd.edu/homer/data/genomes/mm8.v5.10.zip	data/genomes/mm8/	mouse,default
mm9	v5.10	mouse genome and annotation for UCSC mm9	http://homer.ucsd.edu/homer/data/genomes/mm9.v5.10.zip	data/genomes/mm9/	mouse,default
panPan1	v5.10	human genome and annotation for UCSC panPan1	http://homer.ucsd.edu/homer/data/genomes/panPan1.v5.10.zip	data/genomes/panPan1/	human,default
panTro3	v5.10	human genome and annotation for UCSC panTro3	http://homer.ucsd.edu/homer/data/genomes/panTro3.v5.10.zip	data/genomes/panTro3/	human,default
panTro4	v5.10	human genome and annotation for UCSC panTro4	http://homer.ucsd.edu/homer/data/genomes/panTro4.v5.10.zip	data/genomes/panTro4/	human,default
panTro5	v5.10	human genome and annotation for UCSC panTro5	http://homer.ucsd.edu/homer/data/genomes/panTro5.v5.10.zip	data/genomes/panTro5/	human,default
papAnu2	v5.10	human genome and annotation for UCSC papAnu2	http://homer.ucsd.edu/homer/data/genomes/papAnu2.v5.10.zip	data/genomes/papAnu2/	human,default
patens.ASM242v1	v5.10	patens genome and annotation (patens.ASM242v1)	http://homer.ucsd.edu/homer/data/genomes/patens.ASM242v1.v5.10.zip	data/genomes/patens.ASM242v1/	patens,default
petMar2	v5.10	lamprey genome and annotation for UCSC petMar2	http://homer.ucsd.edu/homer/data/genomes/petMar2.v5.10.zip	data/genomes/petMar2/	lamprey,default
rheMac2	v5.10	rhesus genome and annotation for UCSC rheMac2	http://homer.ucsd.edu/homer/data/genomes/rheMac2.v5.10.zip	data/genomes/rheMac2/	rhesus,default
rheMac3	v5.10	rhesus genome and annotation for UCSC rheMac3	http://homer.ucsd.edu/homer/data/genomes/rheMac3.v5.10.zip	data/genomes/rheMac3/	rhesus,default
rheMac8	v5.10	rhesus genome and annotation for UCSC rheMac8	http://homer.ucsd.edu/homer/data/genomes/rheMac8.v5.10.zip	data/genomes/rheMac8/	rhesus,default
rice.IRGSP-1.0	v5.10	rice genome and annotation (rice.IRGSP-1.0)	http://homer.ucsd.edu/homer/data/genomes/rice.IRGSP-1.0.v5.10.zip	data/genomes/rice.IRGSP-1.0/	rice,default
rn4	v5.10	rat genome and annotation for UCSC rn4	http://homer.ucsd.edu/homer/data/genomes/rn4.v5.10.zip	data/genomes/rn4/	rat,default
rn5	v5.10	rat genome and annotation for UCSC rn5	http://homer.ucsd.edu/homer/data/genomes/rn5.v5.10.zip	data/genomes/rn5/	rat,default
rn6	v5.10	rat genome and annotation for UCSC rn6	http://homer.ucsd.edu/homer/data/genomes/rn6.v5.10.zip	data/genomes/rn6/	rat,default
sacCer2	v5.10	yeast genome and annotation for UCSC sacCer2	http://homer.ucsd.edu/homer/data/genomes/sacCer2.v5.10.zip	data/genomes/sacCer2/	yeast,default
sacCer3	v5.10	yeast genome and annotation for UCSC sacCer3	http://homer.ucsd.edu/homer/data/genomes/sacCer3.v5.10.zip	data/genomes/sacCer3/	yeast,default
strPur2	v5.10	urchin genome and annotation for UCSC strPur2	http://homer.ucsd.edu/homer/data/genomes/strPur2.v5.10.zip	data/genomes/strPur2/	urchin,default
susScr3	v5.10	pig genome and annotation for UCSC susScr3	http://homer.ucsd.edu/homer/data/genomes/susScr3.v5.10.zip	data/genomes/susScr3/	pig,default
taeGut2	v5.10	zebrafinch genome and annotation for UCSC taeGut2	http://homer.ucsd.edu/homer/data/genomes/taeGut2.v5.10.zip	data/genomes/taeGut2/	zebrafinch,default
tair10	v5.10	arabidopsis genome and annotation (tair10)	http://homer.ucsd.edu/homer/data/genomes/tair10.v5.10.zip	data/genomes/tair10/	arabidopsis,default
tetNig2	v5.10	fugu genome and annotation for UCSC tetNig2	http://homer.ucsd.edu/homer/data/genomes/tetNig2.v5.10.zip	data/genomes/tetNig2/	fugu,default
xenTro2	v5.10	frog genome and annotation for UCSC xenTro2	http://homer.ucsd.edu/homer/data/genomes/xenTro2.v5.10.zip	data/genomes/xenTro2/	frog,default
xenTro3	v5.10	frog genome and annotation for UCSC xenTro3	http://homer.ucsd.edu/homer/data/genomes/xenTro3.v5.10.zip	data/genomes/xenTro3/	frog,default
