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share/homer-4.11-0/motifs/ews-erg.motif
share/homer-4.11-0/motifs/ews-fli1.motif
share/homer-4.11-0/motifs/extras/createMotifTable.pl
share/homer-4.11-0/motifs/extras/motifTable.txt
share/homer-4.11-0/motifs/extras/motifs2symbol.txt
share/homer-4.11-0/motifs/extras/notes.txt
share/homer-4.11-0/motifs/extras/symbol2motifFile.txt
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share/homer-4.11-0/motifs/insects/dl.motif
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share/homer-4.11-0/motifs/nur77.motif
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share/homer-4.11-0/motifs/olig2.motif
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share/homer-4.11-0/motifs/plants/VIP1.motif
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share/homer-4.11-0/motifs/plants/VND3.motif
share/homer-4.11-0/motifs/plants/VND4.motif
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share/homer-4.11-0/motifs/plants/VRN1.motif
share/homer-4.11-0/motifs/plants/WIP5.motif
share/homer-4.11-0/motifs/plants/WRKY11.motif
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share/homer-4.11-0/motifs/plants/WRKY20.motif
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share/homer-4.11-0/motifs/plants/WRKY55.motif
share/homer-4.11-0/motifs/plants/WRKY6.motif
share/homer-4.11-0/motifs/plants/WRKY65.motif
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share/homer-4.11-0/motifs/plants/WRKY71.motif
share/homer-4.11-0/motifs/plants/WRKY75.motif
share/homer-4.11-0/motifs/plants/WRKY8.motif
share/homer-4.11-0/motifs/plants/WUS1.motif
share/homer-4.11-0/motifs/plants/ZIM.motif
share/homer-4.11-0/motifs/plants/ZML1.motif
share/homer-4.11-0/motifs/plants/ZML2.motif
share/homer-4.11-0/motifs/plants/abf1.motif
share/homer-4.11-0/motifs/plants/bHLH10.motif
share/homer-4.11-0/motifs/plants/bHLH122.motif
share/homer-4.11-0/motifs/plants/bHLH130.motif
share/homer-4.11-0/motifs/plants/bHLH157.motif
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share/homer-4.11-0/motifs/plants/bHLH74.motif
share/homer-4.11-0/motifs/plants/bHLH80.motif
share/homer-4.11-0/motifs/plants/bZIP16.motif
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share/homer-4.11-0/motifs/plants/bZIP28.motif
share/homer-4.11-0/motifs/plants/bZIP3.motif
share/homer-4.11-0/motifs/plants/bZIP42.motif
share/homer-4.11-0/motifs/plants/bZIP44.motif
share/homer-4.11-0/motifs/plants/bZIP48.motif
share/homer-4.11-0/motifs/plants/bZIP50.motif
share/homer-4.11-0/motifs/plants/bZIP52.motif
share/homer-4.11-0/motifs/plants/bZIP53.motif
share/homer-4.11-0/motifs/plants/bZIP68.motif
share/homer-4.11-0/motifs/plants/bZIP69.motif
share/homer-4.11-0/motifs/plants/cca.motif
share/homer-4.11-0/motifs/plants/dof24.motif
share/homer-4.11-0/motifs/plants/dof42.motif
share/homer-4.11-0/motifs/plants/dof43.motif
share/homer-4.11-0/motifs/plants/dof45.motif
share/homer-4.11-0/motifs/plants/ebox.motif
share/homer-4.11-0/motifs/plants/eil4.motif
share/homer-4.11-0/motifs/plants/fea4.motif
share/homer-4.11-0/motifs/plants/fhy3.motif
share/homer-4.11-0/motifs/plants/gaga.motif
share/homer-4.11-0/motifs/plants/gbf3.motif
share/homer-4.11-0/motifs/plants/hb6.motif
share/homer-4.11-0/motifs/plants/ibl1.motif
share/homer-4.11-0/motifs/plants/kan1.motif
share/homer-4.11-0/motifs/plants/kn1.motif
share/homer-4.11-0/motifs/plants/lhy.motif
share/homer-4.11-0/motifs/plants/myb3.motif
share/homer-4.11-0/motifs/plants/o2.motif
share/homer-4.11-0/motifs/plants/pcf.motif
share/homer-4.11-0/motifs/plants/pif4.motif
share/homer-4.11-0/motifs/plants/pif5ox.motif
share/homer-4.11-0/motifs/plants/ref6.motif
share/homer-4.11-0/motifs/plants/rin.motif
share/homer-4.11-0/motifs/plants/rpl.motif
share/homer-4.11-0/motifs/plants/sep3.motif
share/homer-4.11-0/motifs/plants/soc1.motif
share/homer-4.11-0/motifs/plants/spch.motif
share/homer-4.11-0/motifs/plants/tagl1.motif
share/homer-4.11-0/motifs/plants/unkprm.motif
share/homer-4.11-0/motifs/plants/unkprm2.motif
share/homer-4.11-0/motifs/plants/unkprm3.motif
share/homer-4.11-0/motifs/plants/unkprm4.motif
share/homer-4.11-0/motifs/ppara.motif
share/homer-4.11-0/motifs/pparg.motif
share/homer-4.11-0/motifs/pr.motif
share/homer-4.11-0/motifs/prdm1.motif
share/homer-4.11-0/motifs/prdm10.motif
share/homer-4.11-0/motifs/prdm14.motif
share/homer-4.11-0/motifs/prdm15.motif
share/homer-4.11-0/motifs/prdm9.motif
share/homer-4.11-0/motifs/prop1.motif
share/homer-4.11-0/motifs/pse.motif
share/homer-4.11-0/motifs/ptf1a.motif
share/homer-4.11-0/motifs/pu1-irf.motif
share/homer-4.11-0/motifs/pu1-irf8.motif
share/homer-4.11-0/motifs/pu1.motif
share/homer-4.11-0/motifs/rara.motif
share/homer-4.11-0/motifs/rarg.motif
share/homer-4.11-0/motifs/rbpj1-ebox.motif
share/homer-4.11-0/motifs/rbpj1.motif
share/homer-4.11-0/motifs/rest.motif
share/homer-4.11-0/motifs/reverb.motif
share/homer-4.11-0/motifs/rfx1.motif
share/homer-4.11-0/motifs/rfx2.motif
share/homer-4.11-0/motifs/rfx3.motif
share/homer-4.11-0/motifs/rfx5.motif
share/homer-4.11-0/motifs/rfx6.motif
share/homer-4.11-0/motifs/rna/celf2.motif
share/homer-4.11-0/motifs/rna/hur.motif
share/homer-4.11-0/motifs/rna/pabpc1.motif
share/homer-4.11-0/motifs/rna/rbfox2.motif
share/homer-4.11-0/motifs/ronin.motif
share/homer-4.11-0/motifs/rora.motif
share/homer-4.11-0/motifs/rorg.motif
share/homer-4.11-0/motifs/rorgt.motif
share/homer-4.11-0/motifs/runx.motif
share/homer-4.11-0/motifs/runx1.motif
share/homer-4.11-0/motifs/runx1m.motif
share/homer-4.11-0/motifs/runx2.motif
share/homer-4.11-0/motifs/rxr.motif
share/homer-4.11-0/motifs/scl.motif
share/homer-4.11-0/motifs/scrt1.motif
share/homer-4.11-0/motifs/sf1.motif
share/homer-4.11-0/motifs/six1.motif
share/homer-4.11-0/motifs/six2.motif
share/homer-4.11-0/motifs/six4.motif
share/homer-4.11-0/motifs/smad2.motif
share/homer-4.11-0/motifs/smad3.motif
share/homer-4.11-0/motifs/smad4.motif
share/homer-4.11-0/motifs/snai1.motif
share/homer-4.11-0/motifs/snai2.motif
share/homer-4.11-0/motifs/sox10.motif
share/homer-4.11-0/motifs/sox15.motif
share/homer-4.11-0/motifs/sox17.motif
share/homer-4.11-0/motifs/sox2.motif
share/homer-4.11-0/motifs/sox21.motif
share/homer-4.11-0/motifs/sox3.motif
share/homer-4.11-0/motifs/sox4.motif
share/homer-4.11-0/motifs/sox6.motif
share/homer-4.11-0/motifs/sox7.motif
share/homer-4.11-0/motifs/sox9.motif
share/homer-4.11-0/motifs/sp1.motif
share/homer-4.11-0/motifs/sp2.motif
share/homer-4.11-0/motifs/sp5.motif
share/homer-4.11-0/motifs/spdef.motif
share/homer-4.11-0/motifs/spib.motif
share/homer-4.11-0/motifs/srebp1a.motif
share/homer-4.11-0/motifs/srebp2.motif
share/homer-4.11-0/motifs/srf.motif
share/homer-4.11-0/motifs/staf.motif
share/homer-4.11-0/motifs/stat1.motif
share/homer-4.11-0/motifs/stat3.il23.motif
share/homer-4.11-0/motifs/stat3.motif
share/homer-4.11-0/motifs/stat4.motif
share/homer-4.11-0/motifs/stat5.motif
share/homer-4.11-0/motifs/stat6.2.motif
share/homer-4.11-0/motifs/stat6.motif
share/homer-4.11-0/motifs/t1isre.motif
share/homer-4.11-0/motifs/table.txt
share/homer-4.11-0/motifs/tata.motif
share/homer-4.11-0/motifs/tbet.motif
share/homer-4.11-0/motifs/tbox-smad.motif
share/homer-4.11-0/motifs/tbr1.motif
share/homer-4.11-0/motifs/tbx20.motif
share/homer-4.11-0/motifs/tbx21.motif
share/homer-4.11-0/motifs/tbx5.motif
share/homer-4.11-0/motifs/tbx6.motif
share/homer-4.11-0/motifs/tcf12.motif
share/homer-4.11-0/motifs/tcf21.motif
share/homer-4.11-0/motifs/tcf3.motif
share/homer-4.11-0/motifs/tcf4.motif
share/homer-4.11-0/motifs/tcf7.motif
share/homer-4.11-0/motifs/tcf7l2.motif
share/homer-4.11-0/motifs/tcfcp2l1.motif
share/homer-4.11-0/motifs/tead.motif
share/homer-4.11-0/motifs/tead1.motif
share/homer-4.11-0/motifs/tead2.motif
share/homer-4.11-0/motifs/tead3.motif
share/homer-4.11-0/motifs/tead4.motif
share/homer-4.11-0/motifs/tfe3.motif
share/homer-4.11-0/motifs/tgif1.motif
share/homer-4.11-0/motifs/tgif2.motif
share/homer-4.11-0/motifs/thrb.motif
share/homer-4.11-0/motifs/tlx.motif
share/homer-4.11-0/motifs/tr4.motif
share/homer-4.11-0/motifs/tra.motif
share/homer-4.11-0/motifs/trb.motif
share/homer-4.11-0/motifs/trps1.motif
share/homer-4.11-0/motifs/twist1.motif
share/homer-4.11-0/motifs/twist2.motif
share/homer-4.11-0/motifs/usf1.motif
share/homer-4.11-0/motifs/usf2.motif
share/homer-4.11-0/motifs/vdr.motif
share/homer-4.11-0/motifs/worms/ces1.motif
share/homer-4.11-0/motifs/worms/dpl1.motif
share/homer-4.11-0/motifs/worms/efl1.motif
share/homer-4.11-0/motifs/worms/egl5.motif
share/homer-4.11-0/motifs/worms/elt3.motif
share/homer-4.11-0/motifs/worms/gei11.motif
share/homer-4.11-0/motifs/worms/hlh1.motif
share/homer-4.11-0/motifs/worms/lin15b.motif
share/homer-4.11-0/motifs/worms/lin39.motif
share/homer-4.11-0/motifs/worms/pha4.motif
share/homer-4.11-0/motifs/worms/pqm1.motif
share/homer-4.11-0/motifs/wt1.motif
share/homer-4.11-0/motifs/xbox.motif
share/homer-4.11-0/motifs/yeast/abf1.motif
share/homer-4.11-0/motifs/yeast/cbf1.motif
share/homer-4.11-0/motifs/yeast/gaga-repeat.motif
share/homer-4.11-0/motifs/yeast/pho2.motif
share/homer-4.11-0/motifs/yeast/pho4.motif
share/homer-4.11-0/motifs/yeast/reb1.motif
share/homer-4.11-0/motifs/yeast/rlr1.motif
share/homer-4.11-0/motifs/yeast/sfp1.motif
share/homer-4.11-0/motifs/yeast/sut1.motif
share/homer-4.11-0/motifs/yeast/tata.motif
share/homer-4.11-0/motifs/yeast/tod6.motif
share/homer-4.11-0/motifs/yy1.motif
share/homer-4.11-0/motifs/zac1.motif
share/homer-4.11-0/motifs/zbtb12.motif
share/homer-4.11-0/motifs/zbtb18.motif
share/homer-4.11-0/motifs/zbtb33.motif
share/homer-4.11-0/motifs/zeb1.motif
share/homer-4.11-0/motifs/zeb2.motif
share/homer-4.11-0/motifs/zfp281.motif
share/homer-4.11-0/motifs/zfp3.motif
share/homer-4.11-0/motifs/zfp57.motif
share/homer-4.11-0/motifs/zfp809.motif
share/homer-4.11-0/motifs/zfx.motif
share/homer-4.11-0/motifs/zic.motif
share/homer-4.11-0/motifs/zic2.motif
share/homer-4.11-0/motifs/zic3.motif
share/homer-4.11-0/motifs/zkscan1.motif
share/homer-4.11-0/motifs/znf136.motif
share/homer-4.11-0/motifs/znf16.motif
share/homer-4.11-0/motifs/znf165.motif
share/homer-4.11-0/motifs/znf189.motif
share/homer-4.11-0/motifs/znf263.motif
share/homer-4.11-0/motifs/znf264.motif
share/homer-4.11-0/motifs/znf317.motif
share/homer-4.11-0/motifs/znf322.motif
share/homer-4.11-0/motifs/znf341.motif
share/homer-4.11-0/motifs/znf382.motif
share/homer-4.11-0/motifs/znf41.motif
share/homer-4.11-0/motifs/znf415.motif
share/homer-4.11-0/motifs/znf416.motif
share/homer-4.11-0/motifs/znf467.motif
share/homer-4.11-0/motifs/znf519.motif
share/homer-4.11-0/motifs/znf528.motif
share/homer-4.11-0/motifs/znf652.motif
share/homer-4.11-0/motifs/znf669.motif
share/homer-4.11-0/motifs/znf675.motif
share/homer-4.11-0/motifs/znf692.motif
share/homer-4.11-0/motifs/znf7.motif
share/homer-4.11-0/motifs/znf711.motif
share/homer-4.11-0/motifs/znf768.motif
share/homer-4.11-0/motifs/zscan22.motif
share/homer-4.11-0/update.txt
share/homer-4.11-0/update/GO/addMSigDBtoHomer.pl
share/homer-4.11-0/update/GO/createNCBIbiosystemOntology.pl
share/homer-4.11-0/update/GO/filterGenesByOrganism.pl
share/homer-4.11-0/update/GO/parseCOSMIC.pl
share/homer-4.11-0/update/GO/parseChrLocationOntology.pl
share/homer-4.11-0/update/GO/parseGWAScatalog.pl
share/homer-4.11-0/update/GO/parseInteractions.pl
share/homer-4.11-0/update/GO/parseOntology_OBO.pl
share/homer-4.11-0/update/GO/parseSMPDB.pl
share/homer-4.11-0/update/GO/populateGOTreeWithGenes.pl
share/homer-4.11-0/update/UCSC/createGOtoGenomeOntology.pl
share/homer-4.11-0/update/UCSC/getIntergenicAnn.pl
share/homer-4.11-0/update/UCSC/makeGenomeAnnotationFromRefGenes.pl
share/homer-4.11-0/update/UCSC/makeRepeatGroups.pl
share/homer-4.11-0/update/UCSC/reformatRefGene.pl
share/homer-4.11-0/update/externalIDs.tsv
share/homer-4.11-0/update/motifs/common.motifs
share/homer-4.11-0/update/motifs/insects/dmmpmm.fly.motifs
share/homer-4.11-0/update/motifs/insects/jaspar.motifs
share/homer-4.11-0/update/motifs/known.rna.motifs
share/homer-4.11-0/update/motifs/parseAthaMap.pl
share/homer-4.11-0/update/motifs/parseJasparMatrix.pl
share/homer-4.11-0/update/motifs/parseStromoMotifs.pl
share/homer-4.11-0/update/motifs/plants/athaMap.motifs
share/homer-4.11-0/update/motifs/plants/athamap.table.txt
share/homer-4.11-0/update/motifs/plants/jaspar.motifs
share/homer-4.11-0/update/motifs/ready2Homer.pl
share/homer-4.11-0/update/motifs/rna-hughes/parseHughesRNA.pl
share/homer-4.11-0/update/motifs/rna-hughes/rna.motifs
share/homer-4.11-0/update/motifs/rna-hughes/table.txt
share/homer-4.11-0/update/motifs/transfac2homer.pl
share/homer-4.11-0/update/motifs/vertebrates/jaspar.motifs
share/homer-4.11-0/update/motifs/vertebrates/vert.extra.jaspar.motifs
share/homer-4.11-0/update/motifs/worms/hlh.jaspar.motifs
share/homer-4.11-0/update/motifs/worms/jaspar.motifs
share/homer-4.11-0/update/motifs/worms/jaspar.worms.motifs
share/homer-4.11-0/update/motifs/worms/matrix_only.txt
share/homer-4.11-0/update/motifs/yeast/harbison.yeast.motifs
share/homer-4.11-0/update/motifs/yeast/jaspar.motifs
share/homer-4.11-0/update/motifs/yeast/macIssac.yeast.motifs
share/homer-4.11-0/update/promoters/fasta2tabMrna.pl
share/homer-4.11-0/update/promoters/getRedunMrna.pl
share/homer-4.11-0/update/promoters/parseUTRs.pl
share/homer-4.11-0/update/taxids.tsv
share/homer-4.11-0/update/ucsc.txt
share/homer-4.11-0/update/updateGeneIdentifiers.pl
share/homer-4.11-0/update/updateMotifFiles.pl
share/homer-4.11-0/update/updateMotifScanningTracks.pl
share/homer-4.11-0/update/updatePromoters.pl
share/homer-4.11-0/update/updateUCSCGenomeAnnotations.pl
share/homer-4.11-0/update/utils/cons2fasta.pl
share/homer-4.11-0/update/utils/downloadConservation.pl
share/homer-4.11-0/update/utils/downloadRepeats.pl
share/homer-4.11-0/update/utils/getSpliceJunc.pl
share/homer-4.11-0/update/utils/parseExons.pl
share/homer-4.11-0/update/utils/refGene2pos.pl
share/homer-4.11-0/update/utils/refseq2pos.pl
share/homer-4.11-0/update/utils/removeChrNameSpaces.pl
