# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/hisat2, last modified Mon Jul 13 00:38:31 2020
# ------------------------------------------------

package:
    name: hisat2
    version: 2.2.0
source:
    sha256: 429882d90ad9c600a986279b3ca5d78573caacf3bf0d780c802c006d4fcf0a01
    url: https://github.com/DaehwanKimLab/hisat2/archive/v2.2.0.tar.gz
build:
    number: '4'
    string: py37hbeab489_4
requirements:
    build:
        - cctools 949.0.1 h22b1bf0_0
        - cctools_osx-64 949.0.1 h5ba7a2e_0
        - clang 9.0.1 default_hf57f61e_0
        - clang-tools 9.0.1 default_hf57f61e_0
        - clang_osx-64 9.0.1 h05bbb7f_2
        - clangxx 9.0.1 default_hf57f61e_0
        - clangxx_osx-64 9.0.1 h05bbb7f_2
        - compiler-rt 9.0.1 h6a512c6_3
        - compiler-rt_osx-64 9.0.1 h99342c6_3
        - ld64 530 0
        - ld64_osx-64 530 h3c32e8a_0
        - libcxx 10.0.0 h1af66ff_2
        - libllvm9 9.0.1 h7475705_1
        - llvm-tools 9.0.1 h1341992_1
        - llvmdev 9.0.1 h7475705_1
        - tapi 1000.10.8 ha1b3eb9_4
        - zlib 1.2.11 h0b31af3_1006
    host:
        - ca-certificates 2020.6.20 hecda079_0
        - libcxx 10.0.0 h1af66ff_2
        - libffi 3.2.1 h4a8c4bd_1007
        - ncurses 6.1 h0a44026_1002
        - openssl 1.1.1g h0b31af3_0
        - python 3.7.6 h90870a6_5_cpython
        - python_abi 3.7 1_cp37m
        - readline 8.0 hed1e85f_1
        - sqlite 3.32.3 h93121df_1
        - tk 8.6.10 hbbe82c9_0
        - xz 5.2.5 h0b31af3_1
        - zlib 1.2.11 h0b31af3_1006
    run:
        - libcxx >=9.0.1
        - perl
        - python >=3.7,<3.8.0a0
        - python_abi 3.7.* *_cp37m
test:
    commands:
        - hisat2 --help
        - hisatgenotype_extract_reads.py --help
about:
    description: HISAT2 is a fast and sensitive alignment program for mapping next-generation
        sequencing reads (both DNA and RNA) to a population of human genomes as well
        as to a single reference genome.
    dev_url: https://github.com/DaehwanKimLab/hisat2
    doc_url: https://daehwankimlab.github.io/hisat2/manual/
    home: http://daehwankimlab.github.io/hisat2
    license: GPL-3.0
    license_family: GPL
    license_file: LICENSE
    summary: Graph-based alignment of next generation sequencing reads to a population
        of genomes.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:HISAT2
        - doi:10.1038/nmeth.3317
        - doi:10.1038/s41587-019-0201-4
    notes: Pre-built indices for HISAT2 can be downloaded from https://daehwankimlab.github.io/hisat2/download/.
