bin/a3m_database_extract
bin/a3m_database_filter
bin/a3m_database_reduce
bin/a3m_extract
bin/a3m_reduce
bin/cstranslate
bin/ffindex_apply
bin/ffindex_build
bin/ffindex_from_fasta
bin/ffindex_from_fasta_with_split
bin/ffindex_get
bin/ffindex_modify
bin/ffindex_order
bin/ffindex_reduce
bin/ffindex_unpack
bin/hhalign
bin/hhalign_omp
bin/hhblits
bin/hhblits_ca3m
bin/hhblits_omp
bin/hhconsensus
bin/hhfilter
bin/hhmake
bin/hhsearch
bin/hhsearch_omp
data/context_data.crf
data/context_data.lib
data/cs219.lib
data/do_not_delete
data/do_not_delete.phr
data/do_not_delete.pin
data/do_not_delete.psq
scripts/Align.pm
scripts/HHPaths.pm
scripts/a3m.py
scripts/a3m.pyc
scripts/addss.pl
scripts/check_a3m.py
scripts/check_a3m.pyc
scripts/cif2fasta.py
scripts/cif2fasta.pyc
scripts/create_profile_from_hhm.pl
scripts/create_profile_from_hmmer.pl
scripts/ffindex.py
scripts/ffindex.pyc
scripts/get_a3m_size.py
scripts/get_a3m_size.pyc
scripts/hh_reader.py
scripts/hh_reader.pyc
scripts/hhmakemodel.pl
scripts/hhmakemodel.py
scripts/hhmakemodel.pyc
scripts/hhsuitedb.py
scripts/hhsuitedb.pyc
scripts/mergeali.pl
scripts/multithread.pl
scripts/pdb2fasta.pl
scripts/pdbfilter.pl
scripts/pdbfilter.py
scripts/pdbfilter.pyc
scripts/reformat.pl
scripts/renumberpdb.pl
scripts/splitfasta.pl
