# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/hatchet, last modified Tue Feb  4 06:20:27 2025
# ------------------------------------------------

package:
  name: hatchet
  version: 2.1.1
source:
  - sha256: c02d997eb266580af6f52990fe053d7cf7734403d9801250b1c6de554875f4bf
    url: https://github.com/raphael-group/hatchet/archive/v2.1.1.tar.gz
  - sha256: 1d58586f9a33ac7035f51f6a04707248218f70bddbec78cb83f11c986ac652cd
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_mac64.pkg
build:
  entry_points:
    - hatchet = hatchet.__main__:main
  number: '1'
  run_exports:
    - hatchet >=2.1.1,<3.0a0
  string: py311h53e8915_1
requirements:
  build:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.4 hf13058a_0
    - ca-certificates 2025.1.31 h8857fd0_0
    - cctools_osx-64 1010.6 hd19c6af_3
    - clang 18.1.8 default_h576c50e_7
    - clang-18 18.1.8 default_h3571c67_7
    - clang_impl_osx-64 18.1.8 h6a44ed1_23
    - clang_osx-64 18.1.8 h7e5c614_23
    - clangxx 18.1.8 default_heb2e8d1_7
    - clangxx_impl_osx-64 18.1.8 h4b7810f_23
    - clangxx_osx-64 18.1.8 h7e5c614_23
    - cmake 3.31.5 h477996e_0
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - krb5 1.21.3 h37d8d59_0
    - ld64_osx-64 951.9 h33512f0_3
    - libclang-cpp18.1 18.1.8 default_h3571c67_7
    - libcurl 8.11.1 h5dec5d8_0
    - libcxx 19.1.7 hf95d169_0
    - libcxx-devel 18.1.8 h7c275be_7
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.6.4 h240833e_0
    - libiconv 1.17 hd75f5a5_2
    - libllvm18 18.1.8 hc29ff6c_3
    - liblzma 5.6.4 hd471939_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libssh2 1.11.1 h3dc7d44_0
    - libuv 1.50.0 h4cb831e_0
    - libxml2 2.13.5 he8ee3e7_1
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 hc29ff6c_3
    - llvm-tools-18 18.1.8 hc29ff6c_3
    - make 4.4.1 h00291cd_2
    - ncurses 6.5 h0622a9a_3
    - openssl 3.4.0 hc426f3f_1
    - rhash 1.4.5 ha44c9a9_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - zstd 1.5.6 h915ae27_0
  host:
    - bzip2 1.0.8 hfdf4475_7
    - ca-certificates 2025.1.31 h8857fd0_0
    - libcxx 19.1.7 hf95d169_0
    - libexpat 2.6.4 h240833e_0
    - libffi 3.4.2 h0d85af4_5
    - liblzma 5.6.4 hd471939_0
    - libsqlite 3.48.0 hdb6dae5_1
    - libzlib 1.3.1 hd23fc13_2
    - ncurses 6.5 h0622a9a_3
    - openssl 3.4.0 hc426f3f_1
    - pip 25.0 pyh8b19718_0
    - python 3.11.11 h9ccd52b_1_cpython
    - readline 8.2 h9e318b2_1
    - setuptools 75.8.0 pyhff2d567_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025a h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
  run:
    - bcftools
    - biopython
    - hmmlearn
    - libcxx >=18
    - matplotlib-base
    - mosdepth
    - numpy <2
    - pandas
    - picard-slim
    - psutil
    - pybedtools
    - pyomo
    - pysam
    - python >=3.11,<3.12.0a0
    - python_abi 3.11.* *_cp311
    - requests
    - samtools
    - scikit-learn
    - scipy
    - seaborn-base
    - statsmodels
    - tabix
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  dev_url: https://github.com/raphael-group/hatchet
  doc_url: https://raphael-group.github.io/hatchet
  home: https://github.com/raphael-group/hatchet
  license: BSD-3-Clause
  license_family: BSD
  license_file: LICENSE
  summary: A package to infer allele and clone-specific copy-number aberrations (CNAs).
extra:
  copy_test_source_files: true
  final: true
