# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /Users/runner/work/1/s/recipes/hatchet, last modified Mon Jul  4 00:44:07 2022
# ------------------------------------------------

package:
  name: hatchet
  version: 1.0.1
source:
  - sha256: 29e86bef46b32a41ec56b81aae5c04b8a3b2263a3ebfc4354620fb2d72457aa5
    url: https://github.com/raphael-group/hatchet/archive/v1.0.1.zip
  - sha256: 1d58586f9a33ac7035f51f6a04707248218f70bddbec78cb83f11c986ac652cd
    url: https://packages.gurobi.com/9.0/gurobi9.0.2_mac64.pkg
build:
  number: '0'
  string: py37h314cd4a_0
requirements:
  build:
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.18.1 h0d85af4_0
    - ca-certificates 2022.6.15 h033912b_0
    - cctools_osx-64 973.0.1 h3eff9a4_10
    - clang 12.0.1 h694c41f_4
    - clang-12 12.0.1 default_he082bbe_4
    - clang_osx-64 12.0.1 h633439f_9
    - clangxx 12.0.1 default_he082bbe_4
    - clangxx_osx-64 12.0.1 hdb584c0_9
    - cmake 3.23.2 hf2c7296_0
    - compiler-rt 12.0.1 he01351e_0
    - compiler-rt_osx-64 12.0.1 hd3f61c9_0
    - expat 2.4.8 h96cf925_0
    - krb5 1.19.3 hb98e516_0
    - ld64_osx-64 609 hc6b1d1e_10
    - libclang-cpp12 12.0.1 default_he082bbe_4
    - libcurl 7.83.1 h23f1065_0
    - libcxx 14.0.6 hce7ea42_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libllvm12 12.0.1 hd011deb_2
    - libllvm13 13.0.1 h64f94b2_2
    - libnghttp2 1.47.0 hca56917_0
    - libssh2 1.10.0 hd3787cc_2
    - libuv 1.43.0 h0d85af4_0
    - libzlib 1.2.12 hfe4f2af_1
    - llvm-tools 12.0.1 hd011deb_2
    - lz4-c 1.9.3 he49afe7_1
    - make 4.3 h22f3db7_1
    - ncurses 6.3 h96cf925_1
    - openssl 3.0.4 hfe4f2af_2
    - rhash 1.4.3 hac89ed1_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.12 hfe4f2af_1
    - zstd 1.5.2 ha9df2e0_2
  host:
    - ca-certificates 2022.6.15 h033912b_0
    - libcxx 14.0.6 hce7ea42_0
    - libffi 3.4.2 h0d85af4_5
    - libzlib 1.2.12 hfe4f2af_1
    - ncurses 6.3 h96cf925_1
    - openssl 3.0.4 hfe4f2af_2
    - python 3.7.12 hf3644f1_100_cpython
    - python_abi 3.7 2_cp37m
    - readline 8.1.2 h3899abd_0
    - setuptools 62.6.0 py37hf985489_0
    - sqlite 3.39.0 hd9f0692_0
    - tk 8.6.12 h5dbffcc_0
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.12 hfe4f2af_1
  run:
    - bcftools>=1.9
    - biopython
    - hmmlearn
    - libcxx >=12.0.1
    - matplotlib-base
    - mosdepth
    - pandas
    - picard
    - psutil
    - pyomo
    - pysam
    - python >=3.7,<3.8.0a0
    - python_abi 3.7.* *_cp37m
    - requests
    - samtools>=1.9
    - scikit-learn
    - scipy
    - seaborn
    - tabix
test:
  imports:
    - hatchet
about:
  description: 'HATCHet is an algorithm to infer allele and clone-specific copy-number

    aberrations (CNAs), clone proportions, and whole-genome duplications

    (WGD) for several tumor clones jointly from multiple bulk-tumor samples

    of the same patient or from a single bulk-tumor sample.

    '
  home: https://github.com/raphael-group/hatchet
  license: BSD-3
  summary: Holistic Allele-specific Tumor Copy-number Heterogeneity
extra:
  copy_test_source_files: true
  final: true
