# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/gmap, last modified Tue Feb 22 02:12:39 2022
# ------------------------------------------------

package:
  name: gmap
  version: 2021.08.25
source:
  patches:
    - single_quote_paths.patch
  sha256: ef58843eb9cfbe174fad8444bf1b52b3f8841731412a3f90544a0e2bb85799b5
  url: http://research-pub.gene.com/gmap/src/gmap-gsnap-2021-08-25.tar.gz
build:
  number: '2'
  string: pl5321h516f2a5_2
requirements:
  build:
    - ca-certificates 2021.10.8 h033912b_0
    - cctools_osx-64 973.0.1 h609b070_7
    - clang 12.0.1 h694c41f_4
    - clang-12 12.0.1 default_he082bbe_4
    - clang_osx-64 12.0.1 h633439f_6
    - clangxx 12.0.1 default_he082bbe_4
    - compiler-rt 12.0.1 he01351e_0
    - compiler-rt_osx-64 12.0.1 hd3f61c9_0
    - ld64_osx-64 609 hc6b1d1e_7
    - libclang-cpp12 12.0.1 default_he082bbe_4
    - libcxx 12.0.1 habf9029_1
    - libllvm12 12.0.1 hd011deb_2
    - libzlib 1.2.11 h9173be1_1013
    - llvm-tools 12.0.1 hd011deb_2
    - make 4.3 h22f3db7_1
    - openssl 3.0.0 h0d85af4_2
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h9173be1_1013
  host:
    - bzip2 1.0.8 h0d85af4_4
    - libzlib 1.2.11 h9173be1_1013
    - perl 5.32.1 2_h0d85af4_perl5
    - zlib 1.2.11 h9173be1_1013
  run:
    - bzip2 >=1.0.8,<2.0a0
    - bzip2 >=1.0.8,<2.0a0
    - libzlib >=1.2.11,<1.3.0a0
    - perl >=5.32.1,<5.33.0a0 *_perl5
    - zlib >=1.2.11,<1.3.0a0
test:
  commands:
    - gmap --help
    - gsnap --help
    - ': | fa_coords | grep ''Error: No contigs were read in.'''
about:
  home: http://research-pub.gene.com/gmap/
  license: Apache-2.0
  license_family: APACHE
  license_file: LICENSE
  summary: Genomic mapping and alignment program for mRNA and EST sequences.
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:gmap
    - doi:10.1093/bioinformatics/bti310
    - doi:10.1093/bioinformatics/btq057
