recipe_sha: 54b50cde49af5b8c60e4f8122e3b442158fc9b2417ce166d10b78c930144df56  # The commit at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |2-
      tomli:               2.0.1-pyhd8ed1ab_0           conda-forge
      typing-extensions:   4.6.2-hd8ed1ab_0             conda-forge
      typing_extensions:   4.6.2-pyha770c72_0           conda-forge
      urllib3:             2.0.2-pyhd8ed1ab_0           conda-forge
      wheel:               0.40.0-pyhd8ed1ab_0          conda-forge
      xz:                  5.2.6-h166bdaf_0             conda-forge
      zipp:                3.15.0-pyhd8ed1ab_0          conda-forge
      zstd:                1.5.2-h3eb15da_6             conda-forge

  Preparing transaction: ...working... done
  Verifying transaction: ...working... done
  Executing transaction: ...working... done
  export PREFIX=/opt/conda/conda-bld/gambit_1685351725074/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p
  export SRC_DIR=/opt/conda/conda-bld/gambit_1685351725074/test_tmp
  import: 'gambit'
  import: 'gambit'
   pytest
  ============================= test session starts ==============================
  platform linux -- Python 3.8.16, pytest-7.3.1, pluggy-1.0.0
  rootdir: $SRC_DIR
  collected 605 items

  tests/test_classify.py .....                                             [  0%]
  tests/test_cluster.py ..                                                 [  1%]
  tests/test_kmers.py ................                                     [  3%]
  tests/test_metric.py ................................................... [ 12%]
  ........................................................................ [ 24%]
  ...........................................                              [ 31%]
  tests/test_misc.py ...                                                   [ 31%]
  tests/test_query.py ...                                                  [ 32%]
  tests/test_results.py ...                                                [ 32%]
  tests/test_seq.py .................                                      [ 35%]
  tests/test_test.py .....................................                 [ 41%]
  tests/cli/test_cli_common.py .................                           [ 44%]
  tests/cli/test_cli_dist.py ..............                                [ 46%]
  tests/cli/test_cli_query.py ........                                     [ 48%]
  tests/cli/test_cli_signatures.py ...............                         [ 50%]
  tests/cli/test_cli_tree.py ..                                            [ 50%]
  tests/db/test_db_migrate.py ..FsF                                        [ 51%]
  tests/db/test_db_models.py ...........                                   [ 53%]
  tests/db/test_db_refdb.py ......                                         [ 54%]
  tests/db/test_db_sqla.py .                                               [ 54%]
  tests/sigs/test_sigs_base.py ........................................... [ 61%]
  ................................................                         [ 69%]
  tests/sigs/test_sigs_calc.py ..................                          [ 72%]
  tests/sigs/test_sigs_convert.py ......                                   [ 73%]
  tests/sigs/test_sigs_hdf5.py ........................................... [ 80%]
  ..........                                                               [ 82%]
  tests/util/test_util_indexing.py ..........                              [ 84%]
  tests/util/test_util_io.py ................................              [ 89%]
  tests/util/test_util_json.py .........                                   [ 90%]
  tests/util/test_util_misc.py .................                           [ 93%]
  tests/util/test_util_progress.py .s..s........s.s..................      [ 99%]
  tests/util/test_util_typing.py ....                                      [100%]

  =================================== FAILURES ===================================
  ________________________ TestCurrentRevision.test_empty ________________________

  self = <test_db_migrate.TestCurrentRevision object at 0x7f88dedb1a30>

      def test_empty(self):
      	"""Test on freshly initialized database."""
      	engine = create_engine('sqlite:///:memory:')
      	init_db(engine)
  >   	assert current_revision(engine) == CURRENT_HEAD
  E    AssertionError: assert None == 'c43540b80d50'
  E       where None = current_revision(Engine(sqlite:///:memory:))

  tests/db/test_db_migrate.py:40: AssertionError
  _________________________________ test_init_db _________________________________

      def test_init_db():
      	"""Test the init_db() function."""
      	engine = create_engine('sqlite:///:memory:')
      	init_db(engine)

      	# Check current revision matches
  >   	assert current_revision(engine) == current_head()
  E    AssertionError: assert None == 'c43540b80d50'
  E       where None = current_revision(Engine(sqlite:///:memory:))
  E       and   'c43540b80d50' = current_head()

  tests/db/test_db_migrate.py:63: AssertionError
  =============================== warnings summary ===============================
  ../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/gambit/db/models.py:28
    $PREFIX/lib/python3.8/site-packages/gambit/db/models.py:28: MovedIn20Warning: The declarative_base() function is now available as sqlalchemy.orm.declarative_base(). (deprecated since: 2.0) (Background on SQLAlchemy 2.0 at: https://sqlalche.me/e/b8d9)
      Base = declarative_base(metadata=metadata)

  ../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/python3.8/site-packages/pkg_resources/__init__.py:121
    $PREFIX/lib/python3.8/site-packages/pkg_resources/__init__.py:121: DeprecationWarning: pkg_resources is deprecated as an API
      warnings.warn("pkg_resources is deprecated as an API", DeprecationWarning)

  -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
  =========================== short test summary info ============================
  FAILED tests/db/test_db_migrate.py::TestCurrentRevision::test_empty - Asserti...
  FAILED tests/db/test_db_migrate.py::test_init_db - AssertionError: assert Non...
  ============ 2 failed, 598 passed, 5 skipped, 2 warnings in 51.93s =============
  Tests failed for gambit-1.0.0-py38he5da3d1_1.tar.bz2 - moving package to /opt/conda/conda-bld/broken
  WARNING:conda_build.build:Tests failed for gambit-1.0.0-py38he5da3d1_1.tar.bz2 - moving package to /opt/conda/conda-bld/broken
  TESTS FAILED: gambit-1.0.0-py38he5da3d1_1.tar.bz2
# Last 100 lines of the build log.
