# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/gambit, last modified Wed Jun  5 16:27:31 2024
# ------------------------------------------------

package:
  name: gambit
  version: 1.0.1
source:
  sha256: d99285b1b8df971d36292ca3639bab5998b501262db8c72769dc1287920f73e8
  url: https://github.com/jlumpe/gambit/archive/v1.0.1.tar.gz
build:
  entry_points:
    - gambit = gambit.cli:cli
  number: '1'
  run_exports:
    - gambit >=1.0.1,<2.0a0
  script: /opt/mambaforge/envs/bioconda/conda-bld/gambit_1717605969603/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/bin/python
    -m pip install --no-deps --no-build-isolation . -vvv
  string: py38h51c4a30_1
requirements:
  build:
    - ca-certificates 2024.6.2 h8857fd0_0
    - cctools_osx-64 986 ha1c5b94_0
    - clang 16.0.6 hd4457cd_7
    - clang-16 16.0.6 default_h4c8afb6_7
    - clang_impl_osx-64 16.0.6 h8787910_15
    - clang_osx-64 16.0.6 hb91bd55_15
    - clangxx 16.0.6 default_ha3b9224_7
    - compiler-rt 16.0.6 ha38d28d_2
    - compiler-rt_osx-64 16.0.6 ha38d28d_2
    - icu 73.2 hf5e326d_0
    - ld64_osx-64 711 ha20a434_0
    - libclang-cpp16 16.0.6 default_h4c8afb6_7
    - libcxx 17.0.6 h88467a6_0
    - libiconv 1.17 hd75f5a5_2
    - libllvm16 16.0.6 hbedff68_3
    - libxml2 2.12.7 h3e169fe_1
    - libzlib 1.3.1 h87427d6_1
    - llvm-tools 16.0.6 hbedff68_3
    - openssl 3.3.1 h87427d6_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  host:
    - bzip2 1.0.8 h10d778d_5
    - ca-certificates 2024.6.2 h8857fd0_0
    - cython 0.29.37 py38h1f5f77c_0
    - libblas 3.9.0 22_osx64_openblas
    - libcblas 3.9.0 22_osx64_openblas
    - libcxx 17.0.6 h88467a6_0
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - liblapack 3.9.0 22_osx64_openblas
    - libopenblas 0.3.27 openmp_hfef2a42_0
    - libsqlite 3.45.3 h92b6c6a_0
    - libzlib 1.3.1 h87427d6_1
    - llvm-openmp 18.1.6 h15ab845_0
    - ncurses 6.5 h5846eda_0
    - numpy 1.24.4 py38h9a4a08f_0
    - openssl 3.3.1 h87427d6_0
    - pip 24.0 pyhd8ed1ab_0
    - python 3.8.19 h5ba8234_0_cpython
    - python_abi 3.8 4_cp38
    - readline 8.2 h9e318b2_1
    - setuptools 70.0.0 pyhd8ed1ab_0
    - tk 8.6.13 h1abcd95_1
    - wheel 0.43.0 pyhd8ed1ab_1
    - xz 5.2.6 h775f41a_0
  run:
    - alembic >=1.0
    - attrs >=20
    - biopython >=1.69
    - cattrs >=1.0
    - click >=7.0
    - h5py >=3.0
    - numpy >=1.24.4,<2.0a0
    - python >=3.8,<3.9.0a0
    - python_abi 3.8.* *_cp38
    - scipy >=1.7
    - setuptools
    - sqlalchemy >=1.1,<2.dev0
test:
  commands:
    - gambit --help
  imports:
    - gambit
  requires:
    - pytest
  source_files:
    - tests/
about:
  description: 'GAMBIT (Genomic Approximation Method for Bacterial Identification
    and Tracking)

    is a tool for rapid taxonomic identification of microbial pathogens. It uses an

    extremely efficient genomic distance metric along with a curated database of

    approximately 50,000 reference genomes (derived from NCBI RefSeq) to identify

    unknown bacterial genomes within seconds.

    '
  dev_url: https://github.com/jlumpe/gambit
  doc_url: https://gambit-genomics.readthedocs.io/en/latest
  home: https://github.com/jlumpe/gambit
  license: AGPL-3.0-or-later
  license_family: AGPL
  license_file: LICENSE
  summary: Tool for rapid taxonomic identification of microbial pathogens
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:gambit_bacterial
    - doi:10.1371/journal.pone.0277575
  recipe-maintainers:
    - jlumpe
  skip-lints:
    - uses_setuptools
