# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/freebayes, last modified Wed May 21 05:15:58 2025
# ------------------------------------------------

package:
  name: freebayes
  version: 1.3.9
source:
  - patches:
      - 0001-make-meson-build-conda-friendly.patch
      - 0002-meson.patch
      - 0003-meson-macos.patch
    sha256: 41ed3074c7648375286168a6708e02dac6788eaca4ca6039ff5a7ed91f257b53
    url: https://github.com/freebayes/freebayes/archive/refs/tags/v1.3.9.tar.gz
  - folder: contrib/smithwaterman
    sha256: 8e1b37ab0e8cd9d3d5cbfdba80258c0ebd0862749b531e213f44cdfe2fc541d8
    url: https://github.com/ekg/smithwaterman/archive/2610e259611ae4cde8f03c72499d28f03f6d38a7.tar.gz
  - folder: contrib/multichoose
    sha256: 0045051ee85d36435582151830efe0eefb466be0ec9aedbbc4465dca30d22102
    url: https://github.com/vcflib/multichoose/archive/255192edd49cfe36557f7f4f0d2d6ee1c702ffbb.tar.gz
  - folder: contrib/fastahack
    sha256: cc1c04729b0c8ba3647cbb7e15e2b490ce701d73773f30f5892d68c36a1dceae
    url: https://github.com/ekg/fastahack/archive/refs/tags/v1.0.0.tar.gz
build:
  number: '2'
  run_exports:
    - freebayes >=1.3.9,<2.0a0
  string: hd217303_2
requirements:
  build:
    - bc 1.07.1 h0d85af4_0
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.5 hf13058a_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - cctools_osx-64 1010.6 hd19c6af_6
    - clang 18.1.8 default_h576c50e_10
    - clang-18 18.1.8 default_h3571c67_10
    - clang-format 18.1.8 default_h3571c67_10
    - clang-format-18 18.1.8 default_h3571c67_10
    - clang-tools 18.1.8 default_h3571c67_10
    - clang_impl_osx-64 18.1.8 h6a44ed1_24
    - clang_osx-64 18.1.8 h7e5c614_24
    - clangdev 18.1.8 default_h3571c67_10
    - clangxx 18.1.8 default_heb2e8d1_10
    - clangxx_impl_osx-64 18.1.8 h4b7810f_24
    - clangxx_osx-64 18.1.8 h7e5c614_24
    - cmake 4.0.2 h477996e_0
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - icu 75.1 h120a0e1_0
    - krb5 1.21.3 h37d8d59_0
    - ld64_osx-64 951.9 h33512f0_6
    - libclang 18.1.8 default_h3571c67_10
    - libclang-cpp 18.1.8 default_h3571c67_10
    - libclang-cpp18.1 18.1.8 default_h3571c67_10
    - libclang13 18.1.8 default_hf2b7afa_10
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.5 hf95d169_0
    - libcxx-devel 18.1.8 h7c275be_8
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libiconv 1.18 h4b5e92a_1
    - libllvm18 18.1.8 default_h3571c67_5
    - liblzma 5.8.1 hd471939_1
    - libmpdec 4.0.0 hfdf4475_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libsqlite 3.49.2 hdb6dae5_0
    - libssh2 1.11.1 hed3591d_0
    - libuv 1.50.0 h4cb831e_0
    - libxml2 2.14.2 h8c082e5_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 default_h3571c67_5
    - llvm-tools-18 18.1.8 default_h3571c67_5
    - llvmdev 18.1.8 default_h3571c67_5
    - meson 1.8.0 pyh29332c3_0
    - ncurses 6.5 h0622a9a_3
    - ninja 1.12.1 hd6aca1a_1
    - openssl 3.5.0 hc426f3f_1
    - pkg-config 0.29.2 hf7e621a_1009
    - python 3.13.3 h534c281_101_cp313
    - python_abi 3.13 7_cp313
    - readline 8.2 h7cca4af_2
    - rhash 1.4.5 ha44c9a9_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025b h78e105d_0
    - zstd 1.5.7 h8210216_2
  host:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.5 hf13058a_0
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - fastahack 1.0.0 h5fa12a8_3
    - htslib 1.21 h9f635df_1
    - krb5 1.21.3 h37d8d59_0
    - libasprintf 0.24.1 h27064b9_0
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.5 hf95d169_0
    - libdeflate 1.24 hcc1b750_0
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libgettextpo 0.24.1 h27064b9_0
    - libiconv 1.18 h4b5e92a_1
    - libidn2 2.3.8 he8ff88c_0
    - libintl 0.24.1 h27064b9_0
    - liblzma 5.8.1 hd471939_1
    - liblzma-devel 5.8.1 hd471939_1
    - libmpdec 4.0.0 hfdf4475_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libsqlite 3.49.2 hdb6dae5_0
    - libssh2 1.11.1 hed3591d_0
    - libunistring 0.9.10 h0d85af4_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-openmp 20.1.5 ha54dae1_0
    - ncurses 6.5 h0622a9a_3
    - openssl 3.5.0 hc426f3f_1
    - perl 5.32.1 7_h10d778d_perl5
    - python 3.13.3 h534c281_101_cp313
    - python_abi 3.13 7_cp313
    - readline 8.2 h7cca4af_2
    - rhash 1.4.5 ha44c9a9_0
    - samtools 1.21 ha21ef43_1
    - simde 0.8.2 h37c8870_0
    - tabixpp 1.1.2 hd217303_4
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025b h78e105d_0
    - vcflib 1.0.12 he0a7b27_3
    - wfa2-lib 2.3.5 h8e8ab34_3
    - wget 1.21.4 hca547e6_0
    - xz 5.8.1 h357f2ed_1
    - xz-gpl-tools 5.8.1 h357f2ed_1
    - xz-tools 5.8.1 hd471939_1
    - zlib 1.3.1 hd23fc13_2
    - zstd 1.5.7 h8210216_2
  run:
    - bzip2 >=1.0.8,<2.0a0
    - htslib >=1.21,<1.22.0a0
    - libcxx >=18
    - liblzma >=5.8.1,<6.0a0
    - libzlib >=1.3.1,<2.0a0
    - parallel
    - samtools
    - vcflib >=1.0.12,<2.0a0
test:
  commands:
    - freebayes --version
    - freebayes-parallel
about:
  dev_url: https://github.com/freebayes/freebayes
  doc_url: https://github.com/freebayes/freebayes/blob/v1.3.9/README.md
  home: https://github.com/freebayes/freebayes
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Bayesian haplotype-based polymorphism discovery and genotyping.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:freebayes
    - doi:10.48550/arXiv.1207.3907
    - usegalaxy-eu:freebayes
  recipe-maintainers:
    - jpuritz
    - mencian
