README.md
setup.cfg
setup.py
bin/epic
bin/epic-blacklist
bin/epic-cluster
bin/epic-count
bin/epic-effective
bin/epic-merge
bin/epic-overlaps
bioepic.egg-info/PKG-INFO
bioepic.egg-info/SOURCES.txt
bioepic.egg-info/dependency_links.txt
bioepic.egg-info/requires.txt
bioepic.egg-info/top_level.txt
epic/__init__.py
epic/version.py
epic/bigwig/__init__.py
epic/bigwig/create_bigwigs.py
epic/blacklist/__init__.py
epic/blacklist/compute_poisson.py
epic/cluster/__init__.py
epic/cluster/cluster.py
epic/config/__init__.py
epic/config/constants.py
epic/config/genomes.py
epic/config/logging_settings.py
epic/matrixes/__init__.py
epic/matrixes/matrixes.py
epic/merge/__init__.py
epic/merge/compute_bed_bins.py
epic/merge/merge.py
epic/merge/merge_helpers.py
epic/run/__init__.py
epic/run/run_epic.py
epic/scripts/__init__.py
epic/scripts/effective_genome_size.py
epic/scripts/genome.snakefile
epic/scripts/chromsizes/ailMel1.chromsizes
epic/scripts/chromsizes/anoCar2.chromsizes
epic/scripts/chromsizes/apiMel1.chromsizes
epic/scripts/chromsizes/aplCal1.chromsizes
epic/scripts/chromsizes/aquChr2.chromsizes
epic/scripts/chromsizes/balAcu1.chromsizes
epic/scripts/chromsizes/braFlo1.chromsizes
epic/scripts/chromsizes/calJac1.chromsizes
epic/scripts/chromsizes/calJac3.chromsizes
epic/scripts/chromsizes/cavPor3.chromsizes
epic/scripts/chromsizes/cerSim1.chromsizes
epic/scripts/chromsizes/chlSab2.chromsizes
epic/scripts/chromsizes/chrPic1.chromsizes
epic/scripts/chromsizes/danRer10.chromsizes
epic/scripts/chromsizes/danRer3.chromsizes
epic/scripts/chromsizes/danRer4.chromsizes
epic/scripts/chromsizes/danRer5.chromsizes
epic/scripts/chromsizes/danRer6.chromsizes
epic/scripts/chromsizes/danRer7.chromsizes
epic/scripts/chromsizes/dm3.chromsizes
epic/scripts/chromsizes/dm6.chromsizes
epic/scripts/chromsizes/echTel2.chromsizes
epic/scripts/chromsizes/equCab1.chromsizes
epic/scripts/chromsizes/equCab2.chromsizes
epic/scripts/chromsizes/eriEur1.chromsizes
epic/scripts/chromsizes/eriEur2.chromsizes
epic/scripts/chromsizes/fr1.chromsizes
epic/scripts/chromsizes/fr2.chromsizes
epic/scripts/chromsizes/galVar1.chromsizes
epic/scripts/chromsizes/gasAcu1.chromsizes
epic/scripts/chromsizes/geoFor1.chromsizes
epic/scripts/chromsizes/gorGor3.chromsizes
epic/scripts/chromsizes/gorGor4.chromsizes
epic/scripts/chromsizes/gorGor5.chromsizes
epic/scripts/chromsizes/hetGla1.chromsizes
epic/scripts/chromsizes/hetGla2.chromsizes
epic/scripts/chromsizes/hg18.chromsizes
epic/scripts/chromsizes/hg19.chromsizes
epic/scripts/chromsizes/hg38.chromsizes
epic/scripts/chromsizes/loxAfr3.chromsizes
epic/scripts/chromsizes/macEug2.chromsizes
epic/scripts/chromsizes/melGal1.chromsizes
epic/scripts/chromsizes/melGal5.chromsizes
epic/scripts/chromsizes/micMur2.chromsizes
epic/scripts/chromsizes/mm10.chromsizes
epic/scripts/chromsizes/mm9.chromsizes
epic/scripts/chromsizes/monDom4.chromsizes
epic/scripts/chromsizes/monDom5.chromsizes
epic/scripts/chromsizes/myoLuc2.chromsizes
epic/scripts/chromsizes/nanPar1.chromsizes
epic/scripts/chromsizes/nasLar1.chromsizes
epic/scripts/chromsizes/nomLeu1.chromsizes
epic/scripts/chromsizes/nomLeu2.chromsizes
epic/scripts/chromsizes/nomLeu3.chromsizes
epic/scripts/chromsizes/ochPri3.chromsizes
epic/scripts/chromsizes/oreNil2.chromsizes
epic/scripts/chromsizes/ornAna1.chromsizes
epic/scripts/chromsizes/ornAna2.chromsizes
epic/scripts/chromsizes/oryCun2.chromsizes
epic/scripts/chromsizes/oryLat2.chromsizes
epic/scripts/chromsizes/oviAri1.chromsizes
epic/scripts/chromsizes/oviAri3.chromsizes
epic/scripts/chromsizes/papAnu2.chromsizes
epic/scripts/chromsizes/petMar1.chromsizes
epic/scripts/chromsizes/petMar2.chromsizes
epic/scripts/chromsizes/ponAbe2.chromsizes
epic/scripts/chromsizes/priPac1.chromsizes
epic/scripts/chromsizes/rheMac2.chromsizes
epic/scripts/chromsizes/rheMac3.chromsizes
epic/scripts/chromsizes/rheMac8.chromsizes
epic/scripts/chromsizes/rhiRox1.chromsizes
epic/scripts/chromsizes/rn4.chromsizes
epic/scripts/chromsizes/rn5.chromsizes
epic/scripts/chromsizes/rn6.chromsizes
epic/scripts/chromsizes/sacCer1.chromsizes
epic/scripts/chromsizes/sacCer2.chromsizes
epic/scripts/chromsizes/sacCer3.chromsizes
epic/scripts/chromsizes/saiBol1.chromsizes
epic/scripts/chromsizes/sorAra2.chromsizes
epic/scripts/chromsizes/speTri2.chromsizes
epic/scripts/chromsizes/strPur1.chromsizes
epic/scripts/chromsizes/strPur2.chromsizes
epic/scripts/chromsizes/susScr2.chromsizes
epic/scripts/chromsizes/susScr3.chromsizes
epic/scripts/chromsizes/taeGut1.chromsizes
epic/scripts/chromsizes/taeGut2.chromsizes
epic/scripts/chromsizes/tarSyr2.chromsizes
epic/scripts/chromsizes/tetNig1.chromsizes
epic/scripts/chromsizes/tetNig2.chromsizes
epic/scripts/chromsizes/triMan1.chromsizes
epic/scripts/chromsizes/xenTro3.chromsizes
epic/scripts/chromsizes/xenTro7.chromsizes
epic/scripts/effective_sizes/ailMel1_100.txt
epic/scripts/effective_sizes/ailMel1_36.txt
epic/scripts/effective_sizes/ailMel1_50.txt
epic/scripts/effective_sizes/ailMel1_75.txt
epic/scripts/effective_sizes/anoCar2_100.txt
epic/scripts/effective_sizes/anoCar2_36.txt
epic/scripts/effective_sizes/anoCar2_50.txt
epic/scripts/effective_sizes/anoCar2_75.txt
epic/scripts/effective_sizes/aplCal1_100.txt
epic/scripts/effective_sizes/aplCal1_36.txt
epic/scripts/effective_sizes/aplCal1_50.txt
epic/scripts/effective_sizes/aplCal1_75.txt
epic/scripts/effective_sizes/aquChr2_100.txt
epic/scripts/effective_sizes/aquChr2_36.txt
epic/scripts/effective_sizes/aquChr2_50.txt
epic/scripts/effective_sizes/aquChr2_75.txt
epic/scripts/effective_sizes/balAcu1_100.txt
epic/scripts/effective_sizes/balAcu1_36.txt
epic/scripts/effective_sizes/balAcu1_50.txt
epic/scripts/effective_sizes/balAcu1_75.txt
epic/scripts/effective_sizes/braFlo1_100.txt
epic/scripts/effective_sizes/braFlo1_36.txt
epic/scripts/effective_sizes/braFlo1_50.txt
epic/scripts/effective_sizes/braFlo1_75.txt
epic/scripts/effective_sizes/calJac1_100.txt
epic/scripts/effective_sizes/calJac1_36.txt
epic/scripts/effective_sizes/calJac1_50.txt
epic/scripts/effective_sizes/calJac1_75.txt
epic/scripts/effective_sizes/calJac3_100.txt
epic/scripts/effective_sizes/calJac3_36.txt
epic/scripts/effective_sizes/calJac3_50.txt
epic/scripts/effective_sizes/calJac3_75.txt
epic/scripts/effective_sizes/cavPor3_100.txt
epic/scripts/effective_sizes/cavPor3_36.txt
epic/scripts/effective_sizes/cavPor3_50.txt
epic/scripts/effective_sizes/cavPor3_75.txt
epic/scripts/effective_sizes/cerSim1_100.txt
epic/scripts/effective_sizes/cerSim1_36.txt
epic/scripts/effective_sizes/cerSim1_50.txt
epic/scripts/effective_sizes/cerSim1_75.txt
epic/scripts/effective_sizes/chlSab2_100.txt
epic/scripts/effective_sizes/chlSab2_36.txt
epic/scripts/effective_sizes/chlSab2_50.txt
epic/scripts/effective_sizes/chlSab2_75.txt
epic/scripts/effective_sizes/chrPic1_100.txt
epic/scripts/effective_sizes/chrPic1_36.txt
epic/scripts/effective_sizes/chrPic1_50.txt
epic/scripts/effective_sizes/chrPic1_75.txt
epic/scripts/effective_sizes/danRer10_100.txt
epic/scripts/effective_sizes/danRer10_36.txt
epic/scripts/effective_sizes/danRer10_50.txt
epic/scripts/effective_sizes/danRer10_75.txt
epic/scripts/effective_sizes/danRer3_100.txt
epic/scripts/effective_sizes/danRer3_36.txt
epic/scripts/effective_sizes/danRer3_50.txt
epic/scripts/effective_sizes/danRer3_75.txt
epic/scripts/effective_sizes/danRer4_100.txt
epic/scripts/effective_sizes/danRer4_36.txt
epic/scripts/effective_sizes/danRer4_50.txt
epic/scripts/effective_sizes/danRer4_75.txt
epic/scripts/effective_sizes/danRer5_100.txt
epic/scripts/effective_sizes/danRer5_36.txt
epic/scripts/effective_sizes/danRer5_50.txt
epic/scripts/effective_sizes/danRer5_75.txt
epic/scripts/effective_sizes/danRer6_100.txt
epic/scripts/effective_sizes/danRer6_36.txt
epic/scripts/effective_sizes/danRer6_50.txt
epic/scripts/effective_sizes/danRer6_75.txt
epic/scripts/effective_sizes/danRer7_100.txt
epic/scripts/effective_sizes/danRer7_36.txt
epic/scripts/effective_sizes/danRer7_50.txt
epic/scripts/effective_sizes/danRer7_75.txt
epic/scripts/effective_sizes/dm3_100.txt
epic/scripts/effective_sizes/dm3_36.txt
epic/scripts/effective_sizes/dm3_50.txt
epic/scripts/effective_sizes/dm3_75.txt
epic/scripts/effective_sizes/dm6_100.txt
epic/scripts/effective_sizes/dm6_36.txt
epic/scripts/effective_sizes/dm6_50.txt
epic/scripts/effective_sizes/dm6_75.txt
epic/scripts/effective_sizes/echTel2_100.txt
epic/scripts/effective_sizes/echTel2_36.txt
epic/scripts/effective_sizes/echTel2_50.txt
epic/scripts/effective_sizes/echTel2_75.txt
epic/scripts/effective_sizes/equCab1_100.txt
epic/scripts/effective_sizes/equCab1_36.txt
epic/scripts/effective_sizes/equCab1_50.txt
epic/scripts/effective_sizes/equCab1_75.txt
epic/scripts/effective_sizes/equCab2_100.txt
epic/scripts/effective_sizes/equCab2_36.txt
epic/scripts/effective_sizes/equCab2_50.txt
epic/scripts/effective_sizes/equCab2_75.txt
epic/scripts/effective_sizes/eriEur1_100.txt
epic/scripts/effective_sizes/eriEur1_36.txt
epic/scripts/effective_sizes/eriEur1_50.txt
epic/scripts/effective_sizes/eriEur1_75.txt
epic/scripts/effective_sizes/eriEur2_100.txt
epic/scripts/effective_sizes/eriEur2_36.txt
epic/scripts/effective_sizes/eriEur2_50.txt
epic/scripts/effective_sizes/eriEur2_75.txt
epic/scripts/effective_sizes/fr1_100.txt
epic/scripts/effective_sizes/fr1_36.txt
epic/scripts/effective_sizes/fr1_50.txt
epic/scripts/effective_sizes/fr1_75.txt
epic/scripts/effective_sizes/fr2_100.txt
epic/scripts/effective_sizes/fr2_36.txt
epic/scripts/effective_sizes/fr2_50.txt
epic/scripts/effective_sizes/fr2_75.txt
epic/scripts/effective_sizes/galVar1_100.txt
epic/scripts/effective_sizes/galVar1_36.txt
epic/scripts/effective_sizes/galVar1_50.txt
epic/scripts/effective_sizes/galVar1_75.txt
epic/scripts/effective_sizes/gasAcu1_100.txt
epic/scripts/effective_sizes/gasAcu1_36.txt
epic/scripts/effective_sizes/gasAcu1_50.txt
epic/scripts/effective_sizes/gasAcu1_75.txt
epic/scripts/effective_sizes/geoFor1_100.txt
epic/scripts/effective_sizes/geoFor1_36.txt
epic/scripts/effective_sizes/geoFor1_50.txt
epic/scripts/effective_sizes/geoFor1_75.txt
epic/scripts/effective_sizes/gorGor3_100.txt
epic/scripts/effective_sizes/gorGor3_36.txt
epic/scripts/effective_sizes/gorGor3_50.txt
epic/scripts/effective_sizes/gorGor3_75.txt
epic/scripts/effective_sizes/gorGor4_100.txt
epic/scripts/effective_sizes/gorGor4_36.txt
epic/scripts/effective_sizes/gorGor4_50.txt
epic/scripts/effective_sizes/gorGor4_75.txt
epic/scripts/effective_sizes/gorGor5_100.txt
epic/scripts/effective_sizes/gorGor5_36.txt
epic/scripts/effective_sizes/gorGor5_50.txt
epic/scripts/effective_sizes/gorGor5_75.txt
epic/scripts/effective_sizes/hetGla1_100.txt
epic/scripts/effective_sizes/hetGla1_36.txt
epic/scripts/effective_sizes/hetGla1_50.txt
epic/scripts/effective_sizes/hetGla1_75.txt
epic/scripts/effective_sizes/hetGla2_100.txt
epic/scripts/effective_sizes/hetGla2_36.txt
epic/scripts/effective_sizes/hetGla2_50.txt
epic/scripts/effective_sizes/hetGla2_75.txt
epic/scripts/effective_sizes/hg18_100.txt
epic/scripts/effective_sizes/hg18_36.txt
epic/scripts/effective_sizes/hg18_50.txt
epic/scripts/effective_sizes/hg18_75.txt
epic/scripts/effective_sizes/hg19_100.txt
epic/scripts/effective_sizes/hg19_36.txt
epic/scripts/effective_sizes/hg19_50.txt
epic/scripts/effective_sizes/hg19_75.txt
epic/scripts/effective_sizes/hg38_100.txt
epic/scripts/effective_sizes/hg38_36.txt
epic/scripts/effective_sizes/hg38_50.txt
epic/scripts/effective_sizes/hg38_75.txt
epic/scripts/effective_sizes/macEug2_100.txt
epic/scripts/effective_sizes/macEug2_36.txt
epic/scripts/effective_sizes/macEug2_50.txt
epic/scripts/effective_sizes/macEug2_75.txt
epic/scripts/effective_sizes/melGal1_100.txt
epic/scripts/effective_sizes/melGal1_36.txt
epic/scripts/effective_sizes/melGal1_50.txt
epic/scripts/effective_sizes/melGal1_75.txt
epic/scripts/effective_sizes/melGal5_100.txt
epic/scripts/effective_sizes/melGal5_36.txt
epic/scripts/effective_sizes/melGal5_50.txt
epic/scripts/effective_sizes/melGal5_75.txt
epic/scripts/effective_sizes/micMur2_100.txt
epic/scripts/effective_sizes/micMur2_36.txt
epic/scripts/effective_sizes/micMur2_50.txt
epic/scripts/effective_sizes/micMur2_75.txt
epic/scripts/effective_sizes/mm10_100.txt
epic/scripts/effective_sizes/mm10_36.txt
epic/scripts/effective_sizes/mm10_50.txt
epic/scripts/effective_sizes/mm10_75.txt
epic/scripts/effective_sizes/mm9_100.txt
epic/scripts/effective_sizes/mm9_36.txt
epic/scripts/effective_sizes/mm9_50.txt
epic/scripts/effective_sizes/mm9_75.txt
epic/scripts/effective_sizes/monDom4_100.txt
epic/scripts/effective_sizes/monDom4_36.txt
epic/scripts/effective_sizes/monDom4_50.txt
epic/scripts/effective_sizes/monDom4_75.txt
epic/scripts/effective_sizes/monDom5_100.txt
epic/scripts/effective_sizes/monDom5_36.txt
epic/scripts/effective_sizes/monDom5_50.txt
epic/scripts/effective_sizes/monDom5_75.txt
epic/scripts/effective_sizes/myoLuc2_100.txt
epic/scripts/effective_sizes/myoLuc2_36.txt
epic/scripts/effective_sizes/myoLuc2_50.txt
epic/scripts/effective_sizes/myoLuc2_75.txt
epic/scripts/effective_sizes/nanPar1_100.txt
epic/scripts/effective_sizes/nanPar1_36.txt
epic/scripts/effective_sizes/nanPar1_50.txt
epic/scripts/effective_sizes/nanPar1_75.txt
epic/scripts/effective_sizes/nasLar1_100.txt
epic/scripts/effective_sizes/nasLar1_36.txt
epic/scripts/effective_sizes/nasLar1_50.txt
epic/scripts/effective_sizes/nasLar1_75.txt
epic/scripts/effective_sizes/nomLeu1_100.txt
epic/scripts/effective_sizes/nomLeu1_36.txt
epic/scripts/effective_sizes/nomLeu1_50.txt
epic/scripts/effective_sizes/nomLeu1_75.txt
epic/scripts/effective_sizes/nomLeu2_100.txt
epic/scripts/effective_sizes/nomLeu2_36.txt
epic/scripts/effective_sizes/nomLeu2_50.txt
epic/scripts/effective_sizes/nomLeu2_75.txt
epic/scripts/effective_sizes/nomLeu3_100.txt
epic/scripts/effective_sizes/nomLeu3_36.txt
epic/scripts/effective_sizes/nomLeu3_50.txt
epic/scripts/effective_sizes/nomLeu3_75.txt
epic/scripts/effective_sizes/ochPri3_100.txt
epic/scripts/effective_sizes/ochPri3_36.txt
epic/scripts/effective_sizes/ochPri3_50.txt
epic/scripts/effective_sizes/ochPri3_75.txt
epic/scripts/effective_sizes/oreNil2_100.txt
epic/scripts/effective_sizes/oreNil2_36.txt
epic/scripts/effective_sizes/oreNil2_50.txt
epic/scripts/effective_sizes/oreNil2_75.txt
epic/scripts/effective_sizes/ornAna1_100.txt
epic/scripts/effective_sizes/ornAna1_36.txt
epic/scripts/effective_sizes/ornAna1_50.txt
epic/scripts/effective_sizes/ornAna1_75.txt
epic/scripts/effective_sizes/ornAna2_100.txt
epic/scripts/effective_sizes/ornAna2_36.txt
epic/scripts/effective_sizes/ornAna2_50.txt
epic/scripts/effective_sizes/ornAna2_75.txt
epic/scripts/effective_sizes/oryCun2_100.txt
epic/scripts/effective_sizes/oryCun2_36.txt
epic/scripts/effective_sizes/oryCun2_50.txt
epic/scripts/effective_sizes/oryCun2_75.txt
epic/scripts/effective_sizes/oryLat2_100.txt
epic/scripts/effective_sizes/oryLat2_36.txt
epic/scripts/effective_sizes/oryLat2_50.txt
epic/scripts/effective_sizes/oryLat2_75.txt
epic/scripts/effective_sizes/oviAri1_100.txt
epic/scripts/effective_sizes/oviAri1_36.txt
epic/scripts/effective_sizes/oviAri1_50.txt
epic/scripts/effective_sizes/oviAri1_75.txt
epic/scripts/effective_sizes/oviAri3_100.txt
epic/scripts/effective_sizes/oviAri3_36.txt
epic/scripts/effective_sizes/oviAri3_50.txt
epic/scripts/effective_sizes/oviAri3_75.txt
epic/scripts/effective_sizes/petMar1_100.txt
epic/scripts/effective_sizes/petMar1_36.txt
epic/scripts/effective_sizes/petMar1_50.txt
epic/scripts/effective_sizes/petMar1_75.txt
epic/scripts/effective_sizes/petMar2_100.txt
epic/scripts/effective_sizes/petMar2_36.txt
epic/scripts/effective_sizes/petMar2_50.txt
epic/scripts/effective_sizes/petMar2_75.txt
epic/scripts/effective_sizes/ponAbe2_100.txt
epic/scripts/effective_sizes/ponAbe2_36.txt
epic/scripts/effective_sizes/ponAbe2_50.txt
epic/scripts/effective_sizes/ponAbe2_75.txt
epic/scripts/effective_sizes/priPac1_100.txt
epic/scripts/effective_sizes/priPac1_36.txt
epic/scripts/effective_sizes/priPac1_50.txt
epic/scripts/effective_sizes/priPac1_75.txt
epic/scripts/effective_sizes/rheMac2_100.txt
epic/scripts/effective_sizes/rheMac2_36.txt
epic/scripts/effective_sizes/rheMac2_50.txt
epic/scripts/effective_sizes/rheMac2_75.txt
epic/scripts/effective_sizes/rheMac3_100.txt
epic/scripts/effective_sizes/rheMac3_36.txt
epic/scripts/effective_sizes/rheMac3_50.txt
epic/scripts/effective_sizes/rheMac3_75.txt
epic/scripts/effective_sizes/rheMac8_100.txt
epic/scripts/effective_sizes/rheMac8_36.txt
epic/scripts/effective_sizes/rheMac8_50.txt
epic/scripts/effective_sizes/rheMac8_75.txt
epic/scripts/effective_sizes/rhiRox1_100.txt
epic/scripts/effective_sizes/rhiRox1_36.txt
epic/scripts/effective_sizes/rhiRox1_50.txt
epic/scripts/effective_sizes/rhiRox1_75.txt
epic/scripts/effective_sizes/rn4_100.txt
epic/scripts/effective_sizes/rn4_36.txt
epic/scripts/effective_sizes/rn4_50.txt
epic/scripts/effective_sizes/rn4_75.txt
epic/scripts/effective_sizes/rn5_100.txt
epic/scripts/effective_sizes/rn5_36.txt
epic/scripts/effective_sizes/rn5_50.txt
epic/scripts/effective_sizes/rn5_75.txt
epic/scripts/effective_sizes/rn6_100.txt
epic/scripts/effective_sizes/rn6_36.txt
epic/scripts/effective_sizes/rn6_50.txt
epic/scripts/effective_sizes/rn6_75.txt
epic/scripts/effective_sizes/sacCer1_100.txt
epic/scripts/effective_sizes/sacCer1_36.txt
epic/scripts/effective_sizes/sacCer1_50.txt
epic/scripts/effective_sizes/sacCer1_75.txt
epic/scripts/effective_sizes/sacCer2_100.txt
epic/scripts/effective_sizes/sacCer2_36.txt
epic/scripts/effective_sizes/sacCer2_50.txt
epic/scripts/effective_sizes/sacCer2_75.txt
epic/scripts/effective_sizes/sacCer3_100.txt
epic/scripts/effective_sizes/sacCer3_36.txt
epic/scripts/effective_sizes/sacCer3_50.txt
epic/scripts/effective_sizes/sacCer3_75.txt
epic/scripts/effective_sizes/saiBol1_100.txt
epic/scripts/effective_sizes/saiBol1_36.txt
epic/scripts/effective_sizes/saiBol1_50.txt
epic/scripts/effective_sizes/saiBol1_75.txt
epic/scripts/effective_sizes/sorAra2_100.txt
epic/scripts/effective_sizes/sorAra2_36.txt
epic/scripts/effective_sizes/sorAra2_50.txt
epic/scripts/effective_sizes/sorAra2_75.txt
epic/scripts/effective_sizes/speTri2_100.txt
epic/scripts/effective_sizes/speTri2_36.txt
epic/scripts/effective_sizes/speTri2_50.txt
epic/scripts/effective_sizes/speTri2_75.txt
epic/scripts/effective_sizes/strPur1_100.txt
epic/scripts/effective_sizes/strPur1_36.txt
epic/scripts/effective_sizes/strPur1_50.txt
epic/scripts/effective_sizes/strPur1_75.txt
epic/scripts/effective_sizes/strPur2_100.txt
epic/scripts/effective_sizes/strPur2_36.txt
epic/scripts/effective_sizes/strPur2_50.txt
epic/scripts/effective_sizes/strPur2_75.txt
epic/scripts/effective_sizes/susScr2_100.txt
epic/scripts/effective_sizes/susScr2_36.txt
epic/scripts/effective_sizes/susScr2_50.txt
epic/scripts/effective_sizes/susScr2_75.txt
epic/scripts/effective_sizes/susScr3_100.txt
epic/scripts/effective_sizes/susScr3_36.txt
epic/scripts/effective_sizes/susScr3_50.txt
epic/scripts/effective_sizes/susScr3_75.txt
epic/scripts/effective_sizes/taeGut1_100.txt
epic/scripts/effective_sizes/taeGut1_36.txt
epic/scripts/effective_sizes/taeGut1_50.txt
epic/scripts/effective_sizes/taeGut1_75.txt
epic/scripts/effective_sizes/taeGut2_100.txt
epic/scripts/effective_sizes/taeGut2_36.txt
epic/scripts/effective_sizes/taeGut2_50.txt
epic/scripts/effective_sizes/taeGut2_75.txt
epic/scripts/effective_sizes/tarSyr2_100.txt
epic/scripts/effective_sizes/tarSyr2_36.txt
epic/scripts/effective_sizes/tarSyr2_50.txt
epic/scripts/effective_sizes/tarSyr2_75.txt
epic/scripts/effective_sizes/tetNig1_100.txt
epic/scripts/effective_sizes/tetNig1_36.txt
epic/scripts/effective_sizes/tetNig1_50.txt
epic/scripts/effective_sizes/tetNig1_75.txt
epic/scripts/effective_sizes/tetNig2_100.txt
epic/scripts/effective_sizes/tetNig2_36.txt
epic/scripts/effective_sizes/tetNig2_50.txt
epic/scripts/effective_sizes/tetNig2_75.txt
epic/scripts/effective_sizes/triMan1_100.txt
epic/scripts/effective_sizes/triMan1_36.txt
epic/scripts/effective_sizes/triMan1_50.txt
epic/scripts/effective_sizes/triMan1_75.txt
epic/scripts/effective_sizes/xenTro3_100.txt
epic/scripts/effective_sizes/xenTro3_36.txt
epic/scripts/effective_sizes/xenTro3_50.txt
epic/scripts/effective_sizes/xenTro3_75.txt
epic/scripts/effective_sizes/xenTro7_100.txt
epic/scripts/effective_sizes/xenTro7_36.txt
epic/scripts/effective_sizes/xenTro7_50.txt
epic/scripts/effective_sizes/xenTro7_75.txt
epic/statistics/__init__.py
epic/statistics/add_to_island_expectations.py
epic/statistics/compute_background_probabilites.py
epic/statistics/compute_poisson.py
epic/statistics/compute_score_threshold.py
epic/statistics/compute_values_needed_for_recurrence.py
epic/statistics/compute_window_score.py
epic/statistics/count_to_pvalue.py
epic/statistics/fdr.py
epic/statistics/generate_cumulative_distribution.py
epic/utils/__init__.py
epic/utils/find_readlength.py
epic/utils/helper_functions.py
epic/windows/__init__.py
epic/windows/cluster/__init__.py
epic/windows/cluster/find_islands.py
epic/windows/count/__init__.py
epic/windows/count/count_reads_in_windows.py
epic/windows/count/merge_chromosome_dfs.py
epic/windows/count/remove_out_of_bounds_bins.py
tests/__init__.py
tests/conftest.py
tests/windows/__init__.py
tests/windows/test_count_reads_in_windows.py
tests/windows/test_merge_chromosome_dfs.py