| NUCLEIC GENE FINDING

Predictions of genes and other genomic features

Program name | Description
--- | ---
checktrans | Report STOP codons and ORF statistics of a protein
getorf | Find and extract open reading frames (ORFs)
marscan | Find matrix/scaffold recognition (MRS) signatures in DNA sequences
plotorf | Plot potential open reading frames in a nucleotide sequence
showorf | Display a nucleotide sequence and translation in pretty format
sixpack | Display a DNA sequence with 6-frame translation and ORFs
syco | Draw synonymous codon usage statistic plot for a nucleotide sequence
tcode | Identify protein-coding regions using Fickett TESTCODE statistic
wobble | Plot third base position variability in a nucleotide sequence