README.md
setup.py
bin/ectyper
ectyper/__init__.py
ectyper/commandLineOptions.py
ectyper/definitions.py
ectyper/ectyper.py
ectyper/genomeFunctions.py
ectyper/loggingFunctions.py
ectyper/predictionFunctions.py
ectyper/speciesIdentification.py
ectyper/subprocess_util.py
ectyper.egg-info/PKG-INFO
ectyper.egg-info/SOURCES.txt
ectyper.egg-info/dependency_links.txt
ectyper.egg-info/not-zip-safe
ectyper.egg-info/top_level.txt
ectyper/Data/__init__.py
ectyper/Data/assembly_summary_refseq.txt
ectyper/Data/ecoli_specific_markers.fasta
ectyper/Data/ectyper_new.json
test/test_ectyper_integration.py