# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/dysgu, last modified Sun Apr  6 08:50:14 2025
# ------------------------------------------------

package:
  name: dysgu
  version: 1.8.1
source:
  sha256: fb29291e5139cbd179dd12281bb43890f96a69141aa5a166410bc5e5f9ddb100
  url: https://github.com/kcleal/dysgu/archive/v1.8.1.tar.gz
build:
  binary_relocation: false
  entry_points:
    - dysgu = dysgu.main:cli
  number: '1'
  run_exports:
    - dysgu >=1.8.1,<2.0a0
  string: py311he5941ed_1
requirements:
  build:
    - ca-certificates 2025.1.31 h8857fd0_0
    - cctools_osx-64 973.0.1 habff3f6_15
    - clang 15.0.7 hdae98eb_5
    - clang-15 15.0.7 default_h7151d67_5
    - clang_impl_osx-64 15.0.7 h03d6864_8
    - clang_osx-64 15.0.7 hb91bd55_8
    - clangxx 15.0.7 default_h7151d67_5
    - clangxx_impl_osx-64 15.0.7 h2133e9c_8
    - clangxx_osx-64 15.0.7 hb91bd55_8
    - compiler-rt 15.0.7 ha38d28d_2
    - compiler-rt_osx-64 15.0.7 ha38d28d_2
    - ld64_osx-64 609 h0fd476b_15
    - libclang-cpp15 15.0.7 default_h7151d67_5
    - libcxx 20.1.2 hf95d169_0
    - libiconv 1.18 h4b5e92a_1
    - libllvm15 15.0.7 hc29ff6c_5
    - liblzma 5.8.1 hd471939_0
    - libxml2 2.13.7 h3fbc333_1
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 15.0.7 hc29ff6c_5
    - make 4.4.1 h00291cd_2
    - openssl 3.4.1 hc426f3f_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - zstd 1.5.7 h8210216_2
  host:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.4 hf13058a_0
    - ca-certificates 2025.1.31 h8857fd0_0
    - cython 3.0.12 py311h3c013cf_0
    - htslib 1.21 h9f635df_1
    - icu 75.1 h120a0e1_0
    - joblib 1.4.2 pyhd8ed1ab_1
    - khronos-opencl-icd-loader 2024.10.24 h6e16a3a_1
    - krb5 1.21.3 h37d8d59_0
    - libblas 3.9.0 31_h7f60823_openblas
    - libboost 1.86.0 hf0da243_3
    - libcblas 3.9.0 31_hff6cab4_openblas
    - libcurl 8.13.0 h5dec5d8_0
    - libcxx 20.1.2 hf95d169_0
    - libdeflate 1.22 h00291cd_0
    - libedit 3.1.20250104 pl5321ha958ccf_0
    - libev 4.33 h10d778d_2
    - libexpat 2.7.0 h240833e_0
    - libffi 3.4.6 h281671d_1
    - libgfortran 14.2.0 hef36b68_105
    - libgfortran5 14.2.0 h58528f3_105
    - liblapack 3.9.0 31_h236ab99_openblas
    - liblightgbm 4.6.0 cpu_h458a52c_1
    - liblzma 5.8.1 hd471939_0
    - liblzma-devel 5.8.1 hd471939_0
    - libnghttp2 1.64.0 hc7306c3_0
    - libopenblas 0.3.29 openmp_hbf64a52_0
    - libsqlite 3.49.1 hdb6dae5_2
    - libssh2 1.11.1 h3dc7d44_0
    - libzlib 1.3.1 hd23fc13_2
    - lightgbm 4.6.0 cpu_py_1
    - llvm-openmp 20.1.2 ha54dae1_0
    - ncurses 6.5 h0622a9a_3
    - networkx 3.4.2 pyh267e887_2
    - numpy 2.2.4 py311h27c81cd_0
    - opencl-headers 2024.10.24 h240833e_0
    - openssl 3.4.1 hc426f3f_0
    - pandas 2.2.3 py311haeb46be_1
    - pysam 0.23.0 py311h8104be8_0
    - python 3.11.11 h9ccd52b_2_cpython
    - python-dateutil 2.9.0.post0 pyhff2d567_1
    - python-tzdata 2025.2 pyhd8ed1ab_0
    - python_abi 3.11 6_cp311
    - pytz 2024.1 pyhd8ed1ab_0
    - readline 8.2 h7cca4af_2
    - scikit-learn 1.6.1 py311h542f1db_0
    - scipy 1.15.2 py311h0c91ca8_0
    - setuptools 78.1.0 pyhff2d567_0
    - six 1.17.0 pyhd8ed1ab_0
    - superintervals 0.2.10 py311hfc35d44_0
    - threadpoolctl 3.6.0 pyhecae5ae_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2025b h78e105d_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - xz 5.8.1 h357f2ed_0
    - xz-gpl-tools 5.8.1 h357f2ed_0
    - xz-tools 5.8.1 hd471939_0
    - zlib 1.3.1 hd23fc13_2
    - zstd 1.5.7 h8210216_2
  run:
    - bzip2 >=1.0.8
    - bzip2 >=1.0.8,<2.0a0
    - click >=8.0
    - cython >=0.29
    - htslib >=1.12
    - htslib >=1.21,<1.22.0a0
    - libcurl >=7.75
    - libcurl >=8.13.0,<9.0a0
    - libcxx >=14
    - liblzma >=5.8.1,<6.0a0
    - libzlib >=1.3.1,<2.0a0
    - lightgbm >=3.1
    - networkx >=2.4
    - numpy >=1.18
    - numpy >=1.21,<3
    - openssl >=1.1
    - openssl >=3.4.1,<4.0a0
    - pandas >=1.2
    - pysam >=0.22
    - pysam >=0.23.0,<0.24.0a0
    - python >=3.11,<3.12.0a0
    - python_abi 3.11.* *_cp311
    - scikit-learn >=0.22
    - scipy >=1.7
    - sortedcontainers
    - superintervals >=0.2.10
    - superintervals >=0.2.10,<0.3.0a0
    - xz >=5.2
    - zlib >=1.2
test:
  commands:
    - dysgu --help
  files:
    - dysgu/tests/*
  imports:
    - dysgu
  requires:
    - cython
about:
  dev_url: https://github.com/kcleal/dysgu
  home: https://github.com/kcleal/dysgu
  license: MIT
  license_family: MIT
  license_file: LICENSE.md
  summary: A collection of tools for calling structural variants using short or long
    reads
extra:
  additional-platforms:
    - linux-aarch64
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - kcleal
  skip-lints:
    - cython_must_be_in_host
