LICENSE
MANIFEST.in
README.rst
requirements.txt
setup.cfg
setup.py
dimspy/__init__.py
dimspy/__main__.py
dimspy/experiment.py
dimspy/tools.py
dimspy.egg-info/PKG-INFO
dimspy.egg-info/SOURCES.txt
dimspy.egg-info/dependency_links.txt
dimspy.egg-info/entry_points.txt
dimspy.egg-info/requires.txt
dimspy.egg-info/top_level.txt
dimspy/models/__init__.py
dimspy/models/peak_matrix.py
dimspy/models/peaklist.py
dimspy/models/peaklist_metadata.py
dimspy/models/peaklist_tags.py
dimspy/portals/__init__.py
dimspy/portals/hdf5_portal.py
dimspy/portals/mzml_portal.py
dimspy/portals/paths.py
dimspy/portals/thermo_raw_portal.py
dimspy/portals/txt_portal.py
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.BackgroundSubtraction.XML
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.BackgroundSubtraction.dll
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.Data.XML
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.Data.dll
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.MassPrecisionEstimator.XML
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.MassPrecisionEstimator.dll
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.RawFileReader.XML
dimspy/portals/ThermoRawFileReader_3_0_41/Libraries/ThermoFisher.CommonCore.RawFileReader.dll
dimspy/portals/ThermoRawFileReader_3_0_41/License/RawFileRdr_License_Agreement_RevA.doc
dimspy/process/__init__.py
dimspy/process/mass_calibration.py
dimspy/process/peak_alignment.py
dimspy/process/peak_filters.py
dimspy/process/replicate_processing.py
examples/examples.py
examples/run.bat
examples/run.sh
tests/__init__.py
tests/test_hdf5_portal.py
tests/test_paths_portal.py
tests/test_peak_alignment.py
tests/test_peak_filters.py
tests/test_peak_matrix.py
tests/test_peaklist.py
tests/test_peaklist_metadata.py
tests/test_peaklist_tags.py
tests/test_suite_models.py
tests/test_suite_portals.py
tests/test_suite_process.py
tests/test_suite_runner.py
tests/test_suite_tools.py
tests/test_tools.py
tests/test_txt_portal.py
tests/data/MTBLS79_subset/MTBLS79__01_262_02_263.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_frac_rsd.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_peak_matrix.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_peak_matrix_bf.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_peak_matrix_rf.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_peak_matrix_sf.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_single.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_single.zip
tests/data/MTBLS79_subset/MTBLS79_mzml_single_report.txt
tests/data/MTBLS79_subset/MTBLS79_mzml_triplicates.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_triplicates.zip
tests/data/MTBLS79_subset/MTBLS79_mzml_triplicates_report.txt
tests/data/MTBLS79_subset/MTBLS79_mzml_triplicates_rf.hdf5
tests/data/MTBLS79_subset/MTBLS79_mzml_triplicates_rf_2.hdf5
tests/data/MTBLS79_subset/MTBLS79_raw_batch04_QC17_rep01_262.hdf5
tests/data/MTBLS79_subset/batch04_QC17_rep01_262.hdf5
tests/data/MTBLS79_subset/batch04_QC17_rep01_262.txt
tests/data/MTBLS79_subset/batch04_QC17_rep02_263.hdf5
tests/data/MTBLS79_subset/batch04_QC17_rep02_263.txt
tests/data/MTBLS79_subset/batch04_QC17_rep03_264.hdf5
tests/data/MTBLS79_subset/batch04_QC17_rep03_264.txt
tests/data/MTBLS79_subset/filelist_csl_MTBLS79_mzml_peak_matrix.txt
tests/data/MTBLS79_subset/filelist_csl_MTBLS79_mzml_triplicates.txt
tests/data/MTBLS79_subset/filelist_csl_MTBLS79_mzml_triplicates_rf.txt
tests/data/MTBLS79_subset/filelist_multi.txt
tests/data/MTBLS79_subset/filelist_mzml_single.txt
tests/data/MTBLS79_subset/filelist_mzml_triplicates.txt
tests/data/MTBLS79_subset/filelist_raw_triplicates.txt
tests/data/MTBLS79_subset/merged_0.hdf5
tests/data/MTBLS79_subset/merged_1.hdf5
tests/data/MTBLS79_subset/pm_mzml_triplicates.txt
tests/data/MTBLS79_subset/pm_mzml_triplicates_comprehensive.txt
tests/data/MTBLS79_subset/pm_mzml_triplicates_comprehensive_T.txt
tests/data/MTBLS79_subset/mzml/batch04_QC17_rep01_262.mzML
tests/data/MTBLS79_subset/mzml/batch04_QC17_rep02_263.mzML
tests/data/MTBLS79_subset/mzml/batch04_QC17_rep03_264.mzML
tests/data/MTBLS79_subset/raw/batch04_QC17_rep01_262.RAW
tests/data/MTBLS79_subset/raw/batch04_QC17_rep02_263.RAW
tests/data/MTBLS79_subset/raw/batch04_QC17_rep03_264.RAW
tests/test_results/.gitignore
tests/test_results/MTBLS79_mzml_single_report.txt
tests/test_results/MTBLS79_mzml_triplicates_report.txt
tests/test_results/batch04_B02_rep01_301.txt
tests/test_results/batch04_B02_rep02_302.txt
tests/test_results/batch04_B02_rep03_303.txt
tests/test_results/batch04_QC17_rep01_262.txt
tests/test_results/batch04_QC17_rep02_263.txt
tests/test_results/batch04_QC17_rep03_264.txt
tests/test_results/batch04_S01_rep01_247.txt
tests/test_results/batch04_S01_rep02_248.txt
tests/test_results/batch04_S01_rep03_249.txt
tests/test_results/filelist_csl_MTBLS79_mzml_peak_matrix.txt
tests/test_results/filelist_csl_MTBLS79_mzml_triplicates.txt
tests/test_results/filelist_csl_MTBLS79_mzml_triplicates_rf.txt
tests/test_results/pm_mzml_triplicates.txt
tests/test_results/pm_mzml_triplicates_comprehensive.txt
tests/test_results/pm_mzml_triplicates_comprehensive_T.txt
tests/test_results/pm_mzml_triplicates_snr.txt