# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/cgat-apps, last modified Wed Nov 13 05:40:00 2024
# ------------------------------------------------

package:
  name: cgat-apps
  version: 0.7.4
source:
  patches:
    - 0001-setup.py.patch
  sha256: 3e161597c6e4cf59fc121a8527aeddefd1526f7d13c370d5eaf15b4d3a1894e6
  url: https://github.com/cgat-developers/cgat-apps/archive/refs/tags/v0.7.4.tar.gz
build:
  entry_points:
    - cgat = cgat.cgat:main
  number: '0'
  run_exports:
    - cgat-apps >=0.7.4,<0.8.0a0
  string: py39hfe5adcf_0
requirements:
  build:
    - ca-certificates 2024.8.30 h8857fd0_0
    - cctools_osx-64 1010.6 heaa7f0c_1
    - clang 16.0.6 default_h179603d_13
    - clang-16 16.0.6 default_h0c94c6a_13
    - clang_impl_osx-64 16.0.6 h8787910_19
    - clang_osx-64 16.0.6 hb91bd55_19
    - clangxx 16.0.6 default_h179603d_13
    - clangxx_impl_osx-64 16.0.6 h6d92fbe_19
    - clangxx_osx-64 16.0.6 hb91bd55_19
    - compiler-rt 16.0.6 ha38d28d_2
    - compiler-rt_osx-64 16.0.6 ha38d28d_2
    - icu 75.1 h120a0e1_0
    - ld64_osx-64 951.9 h3516399_1
    - libclang-cpp16 16.0.6 default_h0c94c6a_13
    - libcxx 19.1.3 hf95d169_0
    - libcxx-devel 16.0.6 h8f8a49f_2
    - libiconv 1.17 hd75f5a5_2
    - libllvm16 16.0.6 hbedff68_3
    - libxml2 2.13.4 h12808cf_2
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 16.0.6 hbedff68_3
    - ncurses 6.5 hf036a51_1
    - openssl 3.4.0 hd471939_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  host:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.3 hf13058a_0
    - ca-certificates 2024.8.30 h8857fd0_0
    - cython 3.0.11 py39h84f6f9c_3
    - htslib 1.21 hec81eee_0
    - krb5 1.21.3 h37d8d59_0
    - libblas 3.9.0 25_osx64_openblas
    - libcblas 3.9.0 25_osx64_openblas
    - libcurl 8.10.1 h58e7537_0
    - libcxx 19.1.3 hf95d169_0
    - libdeflate 1.21 hfdf4475_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 h10d778d_2
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - liblapack 3.9.0 25_osx64_openblas
    - libnghttp2 1.64.0 hc7306c3_0
    - libopenblas 0.3.28 openmp_hbf64a52_1
    - libsqlite 3.47.0 h2f8c449_1
    - libssh2 1.11.0 hd019ec5_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-openmp 19.1.3 hf78d878_0
    - ncurses 6.5 hf036a51_1
    - numpy 1.22.4 py39h677350a_0
    - openssl 3.4.0 hd471939_0
    - pip 24.3.1 pyh8b19718_0
    - pysam 0.22.1 py39hfdd62f7_2
    - python 3.9.20 hf24efe3_1_cpython
    - python_abi 3.9 5_cp39
    - readline 8.2 h9e318b2_1
    - setuptools 75.3.0 pyhd8ed1ab_0
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024b hc8b5060_0
    - wheel 0.45.0 pyhd8ed1ab_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  run:
    - alignlib-lite
    - bedtools
    - biopython
    - cgatcore
    - coreutils
    - grep
    - htslib >=1.21,<1.22.0a0
    - libcxx >=16
    - matplotlib-base
    - numpy >=1.22.4,<2.0a0
    - pandas
    - pybedtools
    - pybigwig
    - pysam >=0.22.1,<0.23.0a0
    - python >=3.9,<3.10.0a0
    - python_abi 3.9.* *_cp39
    - pyyaml
    - quicksect
    - scikit-learn
    - scipy
    - sortedcontainers
    - ucsc-bedgraphtobigwig
    - ucsc-wigtobigwig
test:
  commands:
    - cgat --help
    - cgat --help Conversion
    - cgat gtf2table -h
    - find ${PREFIX} -iname "*bamtools.cpython-*-x86_64-linux-gnu.so*" -exec ldd {}
      \;
    - cgat bam2bed -h
  imports:
    - cgat
about:
  dev_url: https://github.com/cgat-developers/cgat-apps
  doc_url: https://cgat-apps.readthedocs.io/en/latest
  home: https://github.com/cgat-developers/cgat-apps
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Computational Genomics Analysis Toolkit.
extra:
  copy_test_source_files: true
  final: true
