# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/cgat-apps, last modified Fri Dec  6 07:54:32 2024
# ------------------------------------------------

package:
  name: cgat-apps
  version: 0.7.10
source:
  sha256: 2519fd2a7b878f616af0e14c67029251f3e9807fa1abbe3b870bb345014bc03c
  url: https://pypi.io/packages/source/c/cgat/cgat-0.7.10.tar.gz
build:
  entry_points:
    - cgat = cgat.cgat:main
  number: '1'
  run_exports:
    - cgat-apps >=0.7.10,<0.8.0a0
  script_env:
    - MACOSX_DEPLOYMENT_TARGET=10.13
  string: py310hfad6fbf_1
requirements:
  build:
    - ca-certificates 2024.8.30 h8857fd0_0
    - cctools_osx-64 1010.6 h00edd4c_2
    - clang 18.1.8 default_h179603d_5
    - clang-18 18.1.8 default_h0c94c6a_5
    - clang_impl_osx-64 18.1.8 h6a44ed1_23
    - clang_osx-64 18.1.8 h7e5c614_23
    - clangxx 18.1.8 default_h179603d_5
    - clangxx_impl_osx-64 18.1.8 h4b7810f_23
    - clangxx_osx-64 18.1.8 h7e5c614_23
    - compiler-rt 18.1.8 h1020d70_1
    - compiler-rt_osx-64 18.1.8 hf2b8a54_1
    - ld64_osx-64 951.9 hc8d1a19_2
    - libclang-cpp18.1 18.1.8 default_h0c94c6a_5
    - libcxx 19.1.5 hf95d169_0
    - libcxx-devel 18.1.8 h7c275be_7
    - libiconv 1.17 hd75f5a5_2
    - libllvm18 18.1.8 h9ce406d_2
    - liblzma 5.6.3 hd471939_1
    - libxml2 2.13.5 he8ee3e7_1
    - libzlib 1.3.1 hd23fc13_2
    - llvm-tools 18.1.8 h9ce406d_2
    - llvm-tools-18 18.1.8 h9ce406d_2
    - ncurses 6.5 hf036a51_1
    - openssl 3.4.0 hd471939_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1300.6.5 h390ca13_0
    - zstd 1.5.6 h915ae27_0
  host:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.34.3 hf13058a_1
    - ca-certificates 2024.8.30 h8857fd0_0
    - cython 3.0.11 py310h62447e2_3
    - htslib 1.21 hec81eee_0
    - krb5 1.21.3 h37d8d59_0
    - libblas 3.9.0 25_osx64_openblas
    - libcblas 3.9.0 25_osx64_openblas
    - libcurl 8.10.1 h58e7537_0
    - libcxx 19.1.5 hf95d169_0
    - libdeflate 1.21 hfdf4475_0
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 h10d778d_2
    - libffi 3.4.2 h0d85af4_5
    - libgfortran 5.0.0 13_2_0_h97931a8_3
    - libgfortran5 13.2.0 h2873a65_3
    - liblapack 3.9.0 25_osx64_openblas
    - liblzma 5.6.3 hd471939_1
    - liblzma-devel 5.6.3 hd471939_1
    - libnghttp2 1.64.0 hc7306c3_0
    - libopenblas 0.3.28 openmp_hbf64a52_1
    - libsqlite 3.47.0 h2f8c449_1
    - libssh2 1.11.1 h3dc7d44_0
    - libzlib 1.3.1 hd23fc13_2
    - llvm-openmp 19.1.5 ha54dae1_0
    - ncurses 6.5 hf036a51_1
    - numpy 1.22.4 py310hed37afb_0
    - openssl 3.4.0 hd471939_0
    - pip 24.3.1 pyh8b19718_0
    - pysam 0.22.1 py310h5327944_2
    - python 3.10.16 h5acdff8_1_cpython
    - python_abi 3.10 5_cp310
    - readline 8.2 h9e318b2_1
    - setuptools 75.6.0 pyhff2d567_1
    - tk 8.6.13 h1abcd95_1
    - tzdata 2024b hc8b5060_0
    - wheel 0.45.1 pyhd8ed1ab_1
    - xz 5.6.3 h357f2ed_1
    - xz-gpl-tools 5.6.3 h357f2ed_1
    - xz-tools 5.6.3 hd471939_1
    - zstd 1.5.6 h915ae27_0
  run:
    - alignlib-lite
    - biopython
    - cgatcore
    - coreutils
    - grep
    - htslib >=1.21,<1.22.0a0
    - libcxx >=18
    - matplotlib-base
    - numpy >=1.22.4,<2.0a0
    - pandas
    - pybedtools
    - pybigwig
    - pysam >=0.22.1,<0.23.0a0
    - python >=3.10,<3.11.0a0
    - python_abi 3.10.* *_cp310
    - pyyaml
    - quicksect
    - scikit-learn
    - scipy
    - sortedcontainers
test:
  commands:
    - cgat --help
    - cgat gtf2table -h
  imports:
    - cgat
  skip: true
about:
  dev_url: https://github.com/cgat-developers/cgat-apps
  doc_url: https://cgat-apps.readthedocs.io/en/latest
  home: https://github.com/cgat-developers/cgat-apps
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: Computational Genomics Analysis Toolkit.
extra:
  additional-platforms:
    - linux-aarch64
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - Acribbs
