# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /Users/distiller/project/recipes/cgat-apps, last modified Fri Aug 27 14:45:05 2021
# ------------------------------------------------

package:
  name: cgat-apps
  version: 0.6.4
source:
  sha256: 9ec800fd8a928d058ad2ccfab810bd25089e44f9f3aadfa7e874dac659f2e21e
  url: https://pypi.io/packages/source/c/cgat/cgat-0.6.4.tar.gz
build:
  entry_points:
    - cgat = cgat.cgat:main
  number: '1'
  string: py37haf52c4c_1
requirements:
  build:
    - cctools_osx-64 949.0.1 h6407bdd_22
    - clang 11.1.0 h694c41f_1
    - clang-11 11.1.0 default_he082bbe_1
    - clang_osx-64 11.1.0 hb91bd55_3
    - clangxx 11.1.0 default_he082bbe_1
    - clangxx_osx-64 11.1.0 h7e1b574_3
    - compiler-rt 11.1.0 h654b07c_0
    - compiler-rt_osx-64 11.1.0 h8c5fa43_0
    - ld64_osx-64 530 he8994da_21
    - ldid 2.1.2 h7660a38_2
    - libclang-cpp11.1 11.1.0 default_he082bbe_1
    - libcxx 12.0.1 habf9029_0
    - libllvm11 11.1.0 hd011deb_2
    - libllvm12 12.0.1 hd011deb_2
    - llvm-tools 11.1.0 hd011deb_2
    - tapi 1100.0.11 h9ce4665_0
    - zlib 1.2.11 h7795811_1010
  host:
    - bzip2 1.0.8 h0d85af4_4
    - c-ares 1.17.2 h0d85af4_0
    - ca-certificates 2021.5.30 h033912b_0
    - cython 0.29.24 py37hd8d24ac_0
    - htslib 1.12 hc38c3fb_1
    - krb5 1.19.2 hcfbf3a7_0
    - libblas 3.9.0 11_osx64_openblas
    - libcblas 3.9.0 11_osx64_openblas
    - libcurl 7.78.0 hf45b732_0
    - libcxx 12.0.1 habf9029_0
    - libdeflate 1.7 h35c211d_5
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 haf1e3a3_1
    - libffi 3.3 h046ec9c_2
    - libgfortran 5.0.0 9_3_0_h6c81a4c_23
    - libgfortran5 9.3.0 h6c81a4c_23
    - liblapack 3.9.0 11_osx64_openblas
    - libnghttp2 1.43.0 h07e645a_0
    - libopenblas 0.3.17 openmp_h3351f45_1
    - libpng 1.6.37 h7cec526_2
    - libssh2 1.9.0 h52ee1ee_6
    - libuuid 2.32.1 h35c211d_1000
    - llvm-openmp 12.0.1 hda6cdc1_1
    - mysql-connector-c 6.1.11 h0f02589_1007
    - ncurses 6.2 h2e338ed_4
    - numpy 1.17.5 py37hec87de9_1
    - openssl 1.1.1k h0d85af4_1
    - pysam 0.16.0.1 py37h505b978_3
    - python 3.7.10 h7728216_100_cpython
    - python_abi 3.7 2_cp37m
    - readline 8.1 h05e3726_0
    - setuptools 57.4.0 py37hf985489_0
    - sqlite 3.36.0 h23a322b_0
    - tk 8.6.11 hd798d34_0
    - ucsc-wigtobigwig 377 h516baf0_1
    - xz 5.2.5 haf1e3a3_1
    - zlib 1.2.11 h7795811_1010
  run:
    - alignlib-lite
    - bedtools
    - biopython
    - cgatcore>=0.6.5
    - coreutils
    - future
    - grep
    - htslib >=1.12,<1.13.0a0
    - htslib >=1.12,<1.13.0a0
    - jinja2
    - libcxx >=11.1.0
    - matplotlib-base
    - numpy
    - pandas
    - pybedtools
    - pybigwig
    - pysam
    - python >=3.7,<3.8.0a0
    - python_abi 3.7.* *_cp37m
    - pyyaml
    - quicksect
    - scikit-learn
    - scipy
    - six
    - sortedcontainers
    - ucsc-bedgraphtobigwig
    - ucsc-bedtobigbed
    - ucsc-wigtobigwig
    - zlib >=1.2.11,<1.3.0a0
test:
  commands:
    - cgat --help
    - cgat --help Conversion
    - cgat gtf2table -h
    - find ${PREFIX} -iname "*bamtools.cpython-*-x86_64-linux-gnu.so*" -exec ldd {}
      \;
    - cgat bam2bed -h
  imports:
    - cgat
about:
  home: https://cgat-apps.readthedocs.io/en/latest/
  license: MIT
  license_file: LICENSE
  summary: Computational Genomics Analysis Toolkit
extra:
  copy_test_source_files: true
  final: true
