# This file created by conda-build 24.5.1
# meta.yaml template originally from:
# /Users/runner/work/1/s/recipes/bowtie2, last modified Wed Aug 14 00:06:23 2024
# ------------------------------------------------

package:
  name: bowtie2
  version: 2.5.4
source:
  sha256: 841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13
  url: https://github.com/BenLangmead/bowtie2/archive/v2.5.4.tar.gz
build:
  number: '3'
  run_exports:
    - bowtie2 >=2.5.4,<3.0a0
  string: h8fd0fe2_3
requirements:
  build:
    - bzip2 1.0.8 hfdf4475_7
    - c-ares 1.33.0 h51dda26_0
    - ca-certificates 2024.7.4 h8857fd0_0
    - cctools_osx-64 986 h303a5ab_3
    - clang 16.0.6 default_h179603d_11
    - clang-16 16.0.6 default_h0c94c6a_11
    - clang_impl_osx-64 16.0.6 h8787910_19
    - clang_osx-64 16.0.6 hb91bd55_19
    - clangxx 16.0.6 default_h179603d_11
    - clangxx_impl_osx-64 16.0.6 h6d92fbe_19
    - clangxx_osx-64 16.0.6 hb91bd55_19
    - cmake 3.30.2 h749d262_0
    - compiler-rt 16.0.6 ha38d28d_2
    - compiler-rt_osx-64 16.0.6 ha38d28d_2
    - git 2.46.0 pl5321h9b6aa9b_0
    - icu 75.1 h120a0e1_0
    - krb5 1.21.3 h37d8d59_0
    - ld64_osx-64 711 h04ffbf3_3
    - libclang-cpp16 16.0.6 default_h0c94c6a_11
    - libcurl 8.9.1 hfcf2730_0
    - libcxx 18.1.8 heced48a_2
    - libedit 3.1.20191231 h0678c8f_2
    - libev 4.33 h10d778d_2
    - libexpat 2.6.2 h73e2aa4_0
    - libiconv 1.17 hd75f5a5_2
    - libintl 0.22.5 h5ff76d1_2
    - libllvm16 16.0.6 hbedff68_3
    - libnghttp2 1.58.0 h64cf6d3_1
    - libssh2 1.11.0 hd019ec5_0
    - libuv 1.48.0 h67532ce_0
    - libxml2 2.12.7 heaf3512_4
    - libzlib 1.3.1 h87427d6_1
    - llvm-tools 16.0.6 hbedff68_3
    - make 4.3 h22f3db7_1
    - ncurses 6.5 h5846eda_0
    - openssl 3.3.1 h87427d6_2
    - pcre2 10.44 h7634a1b_2
    - perl 5.32.1 7_h10d778d_perl5
    - rhash 1.4.4 h0dc2134_0
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.6 h915ae27_0
  host:
    - icu 73.2 hf5e326d_0
    - libcxx 18.1.8 heced48a_2
    - libhwloc 2.11.1 default_h456cccd_1000
    - libiconv 1.17 hd75f5a5_2
    - libxml2 2.12.7 h3e169fe_1
    - libzlib 1.2.13 h87427d6_6
    - llvm-openmp 16.0.6 hff08bdf_0
    - tbb 2021.12.0 h3c5361c_3
    - tbb-devel 2021.12.0 hb2f57f9_3
    - xz 5.2.6 h775f41a_0
    - zlib 1.2.13 h87427d6_6
    - zstd 1.5.6 h915ae27_0
  run:
    - libcxx >=16
    - libzlib >=1.2.13,<2.0a0
    - llvm-openmp >=16.0.6
    - perl
    - python
    - tbb >=2021.12.0
    - zstd >=1.5.6,<1.6.0a0
test:
  commands:
    - bowtie2 --help
    - bowtie2 --version
    - bowtie2-align-l --help
    - bowtie2-align-s --help
    - bowtie2-build --help
    - bowtie2-build-l --help
    - bowtie2-build-s --help
    - bowtie2-inspect --help
    - bowtie2-inspect-l --help
    - bowtie2-inspect-s --help
about:
  dev_url: https://github.com/BenLangmead/bowtie2
  doc_url: https://github.com/BenLangmead/bowtie2/blob/master/README.md
  home: https://bowtie-bio.sourceforge.net/bowtie2/index.shtml
  license: GPL-3.0-only
  license_family: GPL3
  license_file: LICENSE
  summary: A fast and sensitive gapped read aligner.
extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:bowtie2
    - debian:bowtie2
    - doi:10.1038/nmeth.1923
    - usegalaxy-eu:bowtie2
