{"description":"A suite of simple tests like the one bowtie2 already comes with",
 "name" : "set_a",
 "tests": [
    {"description":"The lambda virus genome test.",
     "name":"lambda_long",
     "input_data":{
            "files": [
                 "lambda_virus.1.bt2",
                 "lambda_virus.2.bt2",
                 "lambda_virus.3.bt2",
                 "lambda_virus.4.bt2",
                 "lambda_virus.rev.1.bt2",
                 "lambda_virus.rev.2.bt2",
                 "longreads.fq"
            ],
            "loading":[ " ##BT2DIR##/bowtie2-build ##BT2DIR##/example/reference/lambda_virus.fa ##DATADIR##/lambda_virus",
                        "cp ##BT2DIR##/example/reads/longreads.fq ##DATADIR##/"
             ] 
      },
     "runable":{
            "program":"bowtie2",
            "options":[
                "-x ##DATADIR##/lambda_virus",
                "-U ##DATADIR##/longreads.fq",
                "-S /dev/null"  
            ],
            "parameters":[]
      },
     "metric":"TestTime"
    },
    {"description":"lambda virus long reads test.",
     "name":"lambda_s",
     "input_data":{
            "files": [
                 "lambda_virus.1.bt2",
                 "lambda_virus.2.bt2",
                 "lambda_virus.3.bt2",
                 "lambda_virus.4.bt2",
                 "lambda_virus.rev.1.bt2",
                 "lambda_virus.rev.2.bt2",
                 "longreads.fq"
            ],
            "loading":[ " ##BT2DIR##/bowtie2-build ##BT2DIR##/example/reference/lambda_virus.fa ##DATADIR##/lambda_virus",
                        "cp ##BT2DIR##/example/reads/longreads.fq ##DATADIR##/"
             ]
      }, 
     "runable":{
            "program":"bowtie2",
            "options":[
                "-x ##DATADIR##/lambda_virus",
                "-U ##DATADIR##/longreads.fq",
                "-S /dev/null"  
            ],
            "parameters":[]
      },
     "metric":"TestTime"
    }
 ]
}
