alphabetFrequency	alphabetFrequency
backbone	backbone
backbone,XNAString-method	backbone
backbone,XNAStringSet-method	backbone
backbone<-	backbone
backbone<-,XNAString-method	backbone
backbone<-,XNAStringSet-method	backbone
base	base
base,XNAString-method	base
base,XNAStringSet-method	base
base<-	base
base<-,XNAString-method	base
base<-,XNAStringSet-method	base
changeBase	changeBase
charOrDNA-class	xnastringClassUnions
complementary_bases	complementary_bases
compl_dictionary	compl_dictionary
compl_dictionary,XNAString-method	compl_dictionary
compl_dictionary<-	compl_dictionary
compl_dictionary<-,XNAString-method	compl_dictionary
concatDict	concatDict
conjugate3	conjugate3
conjugate3,XNAString-method	conjugate3
conjugate3,XNAStringSet-method	conjugate3
conjugate3<-	conjugate3
conjugate3<-,XNAString-method	conjugate3
conjugate3<-,XNAStringSet-method	conjugate3
conjugate5	conjugate5
conjugate5,XNAString-method	conjugate5
conjugate5,XNAStringSet-method	conjugate5
conjugate5<-	conjugate5
conjugate5<-,XNAString-method	conjugate5
conjugate5<-,XNAStringSet-method	conjugate5
default_backbone	default_backbone
default_backbone,XNAString-method	default_backbone
default_backbone,XNAStringSet-method	default_backbone
default_backbone<-	default_backbone
default_backbone<-,XNAString-method	default_backbone
default_sugar	default_sugar
default_sugar,XNAString-method	default_sugar
default_sugar,XNAStringSet-method	default_sugar
default_sugar<-	default_sugar
default_sugar<-,XNAString-method	default_sugar
dictionary	dictionary
dictionary,XNAString-method	dictionary
dictionary<-	dictionary
dictionary<-,XNAString-method	dictionary
dinucleotideFrequency	dinucleotideFrequency
dt2Set	dt2Set
duplex_structure	duplex_structure
duplex_structure,XNAString-method	duplex_structure
duplex_structure,XNAStringSet-method	duplex_structure
duplex_structure<-	duplex_structure
duplex_structure<-,XNAString-method	duplex_structure
extractionMethods	xnastringSetClass
helm2String	helm2String
initialize	xnastringClass
initialize,XNAString-method	xnastringClass
instanceOf	instanceOf
listOflists2Dt	listOflists2Dt
mimir2XnaDict	mimir2XnaDict
name	name
name,XNAString-method	name
name,XNAStringSet-method	name
name<-	name
name<-,XNAString-method	name
name<-,XNAStringSet-method	name
objects	objects
objects,XNAStringSet-method	objects
parseRnaHelmComponent	parseRnaHelmComponent
predictDuplexStructure	duplexStructure
predictDuplexStructure,XNAString-method	duplexStructure
predictDuplexStructureFun	duplexStructure
predictMfeStructure	mfeStructure
predictMfeStructure,XNAString-method	mfeStructure
predictMfeStructureFun	mfeStructure
replaceBase	replaceBase
reverseComplementFun	reverseComplementFun
secondary_structure	secondary_structure
secondary_structure,XNAString-method	secondary_structure
secondary_structure,XNAStringSet-method	secondary_structure
secondary_structure<-	secondary_structure
secondary_structure<-,XNAString-method	secondary_structure
seqAlphabetFrequency	seqAlphabetFrequency
seqDinucleotideFrequency	seqDinucleotideFrequency
seqtype	xnastringClass
seqtype,XNAString-method	xnastringClass
seqVectorAlphabetFrequency	seqVectorAlphabetFrequency
seqVectorDinucleotideFrequency	seqVectorDinucleotideFrequency
set2Dt	set2Dt
set2List	set2List
set2List,XNAStringSet-method	set2List
show,XNAString-method	xnastringClass
show,XNAStringSet-method	xnastringSetClass
showMethod	xnastringClass
siRNA_HELM	siRNA_HELM
sugar	sugar
sugar,XNAString-method	sugar
sugar,XNAStringSet-method	sugar
sugar<-	sugar
sugar<-,XNAString-method	sugar
sugar<-,XNAStringSet-method	sugar
target	target
target,XNAString-method	target
target,XNAStringSet-method	target
target<-	target
target<-,XNAString-method	target
target<-,XNAStringSet-method	target
typedListCheck	typedListCheck
uniqueChars	uniqueChars
XNAAlphabetFrequency	alphabetFrequency
XNAAlphabetFrequency,XNAString-method	alphabetFrequency
XNAAlphabetFrequency,XNAStringSet-method	alphabetFrequency
XNAAlphabetFrequencyFun	alphabetFrequency
XNADinucleotideFrequency	dinucleotideFrequency
XNADinucleotideFrequency,XNAString-method	dinucleotideFrequency
XNADinucleotideFrequency,XNAStringSet-method	dinucleotideFrequency
XNADinucleotideFrequencyFun	dinucleotideFrequency
XNAMatchPattern	XNAMatchPattern
XNAMatchPattern,XNAString,character-method	XNAMatchPattern
XNAMatchPattern,XNAString,XString-method	XNAMatchPattern
XNAMatchPDict	XNAMatchPDict
XNAMatchPDict,XNAString,character-method	XNAMatchPDict
XNAMatchPDict,XNAString,XString-method	XNAMatchPDict
xnaObj2Dt	xnaObj2Dt
XNAPairwiseAlignment	XNAPairwiseAlignment
XNAPairwiseAlignment,XNAString,character-method	XNAPairwiseAlignment
XNAReverseComplement	reverseComplement
XNAReverseComplement,XNAString-method	reverseComplement
XNAString	xnastringClass
XNAString-class	xnastringClass
XNAString2XNAStringSet	XNAString2XNAStringSet
xnastringClass	xnastringClass
xnastringClassUnions	xnastringClassUnions
xnastringElementsNumber	xnastringElementsNumber
XNAStringFromHelm	XNAStringFromHelm
XNAStringMethod	xnastringClass
XNAStringSet	xnastringSetClass
XNAStringSet-class	xnastringSetClass
XNAStringSetMethod	xnastringSetClass
XNAStringToHelm	XNAStringToHelm
XNAVmatchPattern	XNAVmatchPattern
XNAVmatchPattern,XNAString,BSgenome-method	XNAVmatchPattern
XNAVmatchPattern,XNAString,character-method	XNAVmatchPattern
XNAVmatchPattern,XNAString,XStringSet-method	XNAVmatchPattern
xna_dictionary	xna_dictionary
[,XNAStringSet,ANY,ANY,ANY-method	xnastringSetClass
[[,XNAStringSet,ANY,ANY-method	xnastringSetClass
[[<-,XNAStringSet,ANY,ANY-method	xnastringSetClass
