# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /Users/runner/work/bioconda-recipes/bioconda-recipes/recipes/bioconductor-xnastring, last modified Thu Dec  7 02:30:23 2023
# ------------------------------------------------

package:
  name: bioconductor-xnastring
  version: 1.10.0
source:
  md5: d09bf1b8eba2843f2b6285d353fb51bc
  url:
    - https://bioarchive.galaxyproject.org/XNAString_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/XNAString/XNAString_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/XNAString_1.10.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-xnastring/bioconductor-xnastring_1.10.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-xnastring >=1.10.0,<1.11.0a0
  string: r43hc0ef7c4_0
requirements:
  build:
    - ca-certificates 2023.11.17 h8857fd0_0
    - cctools_osx-64 973.0.1 habff3f6_15
    - clang 15.0.7 hac416ee_4
    - clang-15 15.0.7 default_h6b1ee41_4
    - clang_impl_osx-64 15.0.7 h03d6864_6
    - clang_osx-64 15.0.7 hb91bd55_6
    - clangxx 15.0.7 default_h6b1ee41_4
    - clangxx_impl_osx-64 15.0.7 h3d2d1bf_6
    - clangxx_osx-64 15.0.7 h655633e_6
    - compiler-rt 15.0.7 ha38d28d_2
    - compiler-rt_osx-64 15.0.7 ha38d28d_2
    - icu 73.2 hf5e326d_0
    - ld64_osx-64 609 h0fd476b_15
    - libclang-cpp15 15.0.7 default_h6b1ee41_4
    - libcxx 16.0.6 hd57cbcb_0
    - libiconv 1.17 hac89ed1_0
    - libllvm15 15.0.7 hbedff68_4
    - libxml2 2.12.2 hc0ae0f7_0
    - libzlib 1.2.13 h8a1eda9_5
    - llvm-tools 15.0.7 hbedff68_4
    - make 4.3 h22f3db7_1
    - openssl 3.2.0 hd75f5a5_1
    - sigtool 0.1.3 h88f4db0_0
    - tapi 1100.0.11 h9ce4665_0
    - xz 5.2.6 h775f41a_0
    - zstd 1.5.5 h829000d_0
  host:
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.1.6 pyhd8ed1ab_0
    - bioconductor-biobase 2.62.0 r43h4c50009_1
    - bioconductor-biocgenerics 0.48.1 r43hdfd78af_2
    - bioconductor-biocio 1.12.0 r43hdfd78af_0
    - bioconductor-biocparallel 1.36.0 r43hc0ef7c4_1
    - bioconductor-biostrings 2.70.1 r43h4c50009_1
    - bioconductor-bsgenome 1.70.1 r43hdfd78af_0
    - bioconductor-data-packages 20231203 hdfd78af_0
    - bioconductor-delayedarray 0.28.0 r43h4c50009_1
    - bioconductor-genomeinfodb 1.38.1 r43hdfd78af_1
    - bioconductor-genomeinfodbdata 1.2.11 r43hdfd78af_1
    - bioconductor-genomicalignments 1.38.0 r43h4c50009_0
    - bioconductor-genomicranges 1.54.1 r43h4c50009_1
    - bioconductor-iranges 2.36.0 r43h4c50009_1
    - bioconductor-matrixgenerics 1.14.0 r43hdfd78af_1
    - bioconductor-rhtslib 2.4.0 r43h4c50009_1
    - bioconductor-rsamtools 2.18.0 r43hc0ef7c4_1
    - bioconductor-rtracklayer 1.62.0 r43h4c50009_0
    - bioconductor-s4arrays 1.2.0 r43h4c50009_1
    - bioconductor-s4vectors 0.40.2 r43h4c50009_1
    - bioconductor-sparsearray 1.2.2 r43h4c50009_1
    - bioconductor-summarizedexperiment 1.32.0 r43hdfd78af_0
    - bioconductor-xvector 0.42.0 r43h4c50009_1
    - bioconductor-zlibbioc 1.48.0 r43h4c50009_1
    - bwidget 1.9.14 h694c41f_1
    - bzip2 1.0.8 h10d778d_5
    - c-ares 1.23.0 h10d778d_0
    - ca-certificates 2023.11.17 h8857fd0_0
    - cairo 1.18.0 h99e66fa_0
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    - clang 16.0.6 hac416ee_3
    - clang-16 16.0.6 default_h6b1ee41_3
    - clang_impl_osx-64 16.0.6 h8787910_6
    - clang_osx-64 16.0.6 hb91bd55_6
    - clangxx 16.0.6 default_h6b1ee41_3
    - clangxx_impl_osx-64 16.0.6 h1b7723c_6
    - clangxx_osx-64 16.0.6 h2fff7d5_6
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    - compiler-rt_osx-64 16.0.6 ha38d28d_2
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    - fontconfig 2.14.2 h5bb23bf_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
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    - gettext 0.21.1 h8a4c099_0
    - gfortran_impl_osx-64 12.3.0 h54fd467_1
    - gfortran_osx-64 12.3.0 h18f7dce_1
    - gmp 6.3.0 h93d8f39_0
    - graphite2 1.3.13 h2e338ed_1001
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    - icu 73.2 hf5e326d_0
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    - krb5 1.21.2 hb884880_0
    - ld64_osx-64 609 ha20a434_15
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    - libclang-cpp16 16.0.6 default_h6b1ee41_3
    - libcurl 8.5.0 h726d00d_0
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    - libdeflate 1.19 ha4e1b8e_0
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    - libglib 2.78.2 h198397b_0
    - libiconv 1.17 hac89ed1_0
    - libjpeg-turbo 3.0.0 h0dc2134_1
    - liblapack 3.9.0 5_h0661a58_netlib
    - libllvm16 16.0.6 he4b1e75_2
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    - libtiff 4.6.0 h684deea_2
    - libwebp-base 1.3.2 h0dc2134_0
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    - llvm-openmp 17.0.6 hb6ac08f_0
    - llvm-tools 16.0.6 he4b1e75_2
    - make 4.3 h22f3db7_1
    - mpc 1.3.1 h81bd1dd_0
    - mpfr 4.2.1 h0c69b56_0
    - ncurses 6.4 h93d8f39_2
    - oniguruma 6.9.9 h10d778d_0
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    - python 3.12.0 h30d4d87_0_cpython
    - python_abi 3.12 4_cp312
    - pyyaml 6.0.1 py312h104f124_1
    - r-abind 1.4_5 r43hc72bb7e_1005
    - r-base 4.3.2 h8eaf9e6_1
    - r-base64enc 0.1_3 r43h6dc245f_1006
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-bitops 1.0_7 r43h6dc245f_2
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    - r-cachem 1.0.8 r43h6dc245f_1
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    - r-ellipsis 0.3.2 r43h6dc245f_2
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    - r-rjson 0.2.21 r43h64b2c41_3
    - r-rlang 1.1.2 r43h64b2c41_0
    - r-rmarkdown 2.25 r43hc72bb7e_0
    - r-sass 0.4.8 r43h64b2c41_0
    - r-snow 0.4_4 r43hc72bb7e_2
    - r-stringi 1.8.2 r43hb55eabf_0
    - r-stringr 1.5.1 r43h785f33e_0
    - r-tinytex 0.49 r43hc72bb7e_0
    - r-vctrs 0.6.5 r43h64b2c41_0
    - r-xfun 0.41 r43h64b2c41_0
    - r-xml 3.99_0.16 r43hd9fb5d4_0
    - r-yaml 2.3.7 r43h6dc245f_1
    - readline 8.2 h9e318b2_1
    - setuptools 68.2.2 pyhd8ed1ab_0
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    - yaml 0.2.5 h0d85af4_2
    - yq 3.2.3 pyhd8ed1ab_0
    - zlib 1.2.13 h8a1eda9_5
    - zstd 1.5.5 h829000d_0
  run:
    - __osx >=10.9
    - bioconductor-biostrings >=2.70.0,<2.71.0
    - bioconductor-biostrings >=2.70.1,<2.71.0a0
    - bioconductor-bsgenome >=1.70.0,<1.71.0
    - bioconductor-bsgenome >=1.70.1,<1.71.0a0
    - bioconductor-genomicranges >=1.54.0,<1.55.0
    - bioconductor-genomicranges >=1.54.1,<1.55.0a0
    - bioconductor-iranges >=2.36.0,<2.37.0
    - bioconductor-iranges >=2.36.0,<2.37.0a0
    - bioconductor-s4vectors >=0.40.0,<0.41.0
    - bioconductor-s4vectors >=0.40.2,<0.41.0a0
    - libblas >=3.9.0,<4.0a0
    - libcxx >=15.0.7
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.3,<4.4.0a0
    - r-data.table
    - r-formattable
    - r-future.apply
    - r-rcpp
    - r-stringi
    - r-stringr
test:
  commands:
    - $R -e "library('XNAString')"
about:
  description: The XNAString package allows for description of base sequences and
    associated chemical modifications in a single object. XNAString is able to capture
    single stranded, as well as double stranded molecules. Chemical modifications
    are represented as independent strings associated with different features of the
    molecules (base sequence, sugar sequence, backbone sequence, modifications) and
    can be read or written to a HELM notation. It also enables secondary structure
    prediction using RNAfold from ViennaRNA. XNAString is designed to be efficient
    representation of nucleic-acid based therapeutics, therefore it stores information
    about target sequences and provides interface for matching and alignment functions
    from Biostrings package.
  home: https://bioconductor.org/packages/3.18/bioc/html/XNAString.html
  license: GPL-2
  license_file: /opt/mambaforge/envs/bioconda/conda-bld/bioconductor-xnastring_1701930052252/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-2
  summary: Efficient Manipulation of Modified Oligonucleotide Sequences
extra:
  copy_test_source_files: true
  final: true
